co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G02350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900490: positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity	0.00E+00
2	GO:2001143: N-methylnicotinate transport	0.00E+00
3	GO:0009560: embryo sac egg cell differentiation	0.00E+00
4	GO:0046398: UDP-glucuronate metabolic process	0.00E+00
5	GO:0010245: radial microtubular system formation	0.00E+00
6	GO:0034263: positive regulation of autophagy in response to ER overload	0.00E+00
7	GO:0052573: UDP-D-galactose metabolic process	0.00E+00
8	GO:2001142: nicotinate transport	0.00E+00
9	GO:0042353: fucose biosynthetic process	0.00E+00
10	GO:0006468: protein phosphorylation	3.61E-05
11	GO:1902065: response to L-glutamate	5.48E-05
12	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	5.48E-05
13	GO:0071366: cellular response to indolebutyric acid stimulus	5.48E-05
14	GO:0046777: protein autophosphorylation	1.09E-04
15	GO:0070588: calcium ion transmembrane transport	1.11E-04
16	GO:0046740: transport of virus in host, cell to cell	1.34E-04
17	GO:0010155: regulation of proton transport	1.34E-04
18	GO:0010372: positive regulation of gibberellin biosynthetic process	1.34E-04
19	GO:0009863: salicylic acid mediated signaling pathway	1.41E-04
20	GO:0009742: brassinosteroid mediated signaling pathway	2.02E-04
21	GO:0042344: indole glucosinolate catabolic process	2.28E-04
22	GO:0006011: UDP-glucose metabolic process	2.28E-04
23	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	2.28E-04
24	GO:0048544: recognition of pollen	3.14E-04
25	GO:0009226: nucleotide-sugar biosynthetic process	3.33E-04
26	GO:0009558: embryo sac cellularization	3.33E-04
27	GO:0006986: response to unfolded protein	3.33E-04
28	GO:0010071: root meristem specification	3.33E-04
29	GO:0030100: regulation of endocytosis	3.33E-04
30	GO:0001709: cell fate determination	4.45E-04
31	GO:1902347: response to strigolactone	4.45E-04
32	GO:0015743: malate transport	4.45E-04
33	GO:0010483: pollen tube reception	4.45E-04
34	GO:0022622: root system development	4.45E-04
35	GO:0033356: UDP-L-arabinose metabolic process	4.45E-04
36	GO:0007112: male meiosis cytokinesis	4.45E-04
37	GO:0006904: vesicle docking involved in exocytosis	4.63E-04
38	GO:0030041: actin filament polymerization	5.66E-04
39	GO:0030308: negative regulation of cell growth	5.66E-04
40	GO:0009817: defense response to fungus, incompatible interaction	6.69E-04
41	GO:0015691: cadmium ion transport	6.92E-04
42	GO:0010256: endomembrane system organization	6.92E-04
43	GO:0048317: seed morphogenesis	6.92E-04
44	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	9.62E-04
45	GO:0006887: exocytosis	9.88E-04
46	GO:0006402: mRNA catabolic process	1.11E-03
47	GO:0010078: maintenance of root meristem identity	1.11E-03
48	GO:0045010: actin nucleation	1.11E-03
49	GO:0010492: maintenance of shoot apical meristem identity	1.11E-03
50	GO:1900150: regulation of defense response to fungus	1.11E-03
51	GO:0016310: phosphorylation	1.24E-03
52	GO:0006997: nucleus organization	1.26E-03
53	GO:0030968: endoplasmic reticulum unfolded protein response	1.26E-03
54	GO:0010345: suberin biosynthetic process	1.41E-03
55	GO:0007338: single fertilization	1.41E-03
56	GO:0010449: root meristem growth	1.58E-03
57	GO:0008202: steroid metabolic process	1.58E-03
58	GO:0019538: protein metabolic process	1.75E-03
59	GO:0048229: gametophyte development	1.93E-03
60	GO:0052544: defense response by callose deposition in cell wall	1.93E-03
61	GO:0034605: cellular response to heat	2.49E-03
62	GO:0010143: cutin biosynthetic process	2.49E-03
63	GO:0046686: response to cadmium ion	2.70E-03
64	GO:0046854: phosphatidylinositol phosphorylation	2.70E-03
65	GO:0009969: xyloglucan biosynthetic process	2.70E-03
66	GO:0010025: wax biosynthetic process	2.90E-03
67	GO:0009555: pollen development	2.91E-03
68	GO:0035556: intracellular signal transduction	3.12E-03
69	GO:0008299: isoprenoid biosynthetic process	3.32E-03
70	GO:0009814: defense response, incompatible interaction	3.77E-03
71	GO:0030433: ubiquitin-dependent ERAD pathway	3.77E-03
72	GO:0031348: negative regulation of defense response	3.77E-03
73	GO:0009686: gibberellin biosynthetic process	4.00E-03
74	GO:0007165: signal transduction	4.19E-03
75	GO:0009306: protein secretion	4.23E-03
76	GO:0080022: primary root development	4.71E-03
77	GO:0042335: cuticle development	4.71E-03
78	GO:0009741: response to brassinosteroid	4.96E-03
79	GO:0009960: endosperm development	4.96E-03
80	GO:0007018: microtubule-based movement	5.22E-03
81	GO:0009791: post-embryonic development	5.48E-03
82	GO:0006970: response to osmotic stress	5.68E-03
83	GO:0031047: gene silencing by RNA	6.00E-03
84	GO:0048366: leaf development	6.21E-03
85	GO:0006914: autophagy	6.55E-03
86	GO:0007267: cell-cell signaling	6.83E-03
87	GO:0000910: cytokinesis	7.11E-03
88	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	7.69E-03
89	GO:0009816: defense response to bacterium, incompatible interaction	7.69E-03
90	GO:0009627: systemic acquired resistance	7.99E-03
91	GO:0006886: intracellular protein transport	8.07E-03
92	GO:0009651: response to salt stress	8.63E-03
93	GO:0009631: cold acclimation	9.86E-03
94	GO:0006397: mRNA processing	1.01E-02
95	GO:0048364: root development	1.01E-02
96	GO:0045087: innate immune response	1.05E-02
97	GO:0006897: endocytosis	1.19E-02
98	GO:0006855: drug transmembrane transport	1.40E-02
99	GO:0000165: MAPK cascade	1.44E-02
100	GO:0031347: regulation of defense response	1.44E-02
101	GO:0009738: abscisic acid-activated signaling pathway	1.66E-02
102	GO:0009611: response to wounding	1.76E-02
103	GO:0009626: plant-type hypersensitive response	1.83E-02
104	GO:0009737: response to abscisic acid	1.86E-02
105	GO:0009620: response to fungus	1.87E-02
106	GO:0009553: embryo sac development	1.95E-02
107	GO:0018105: peptidyl-serine phosphorylation	2.04E-02
108	GO:0000398: mRNA splicing, via spliceosome	2.21E-02
109	GO:0009845: seed germination	2.47E-02
110	GO:0016567: protein ubiquitination	2.91E-02
111	GO:0007623: circadian rhythm	2.94E-02
112	GO:0006470: protein dephosphorylation	3.24E-02
113	GO:0007166: cell surface receptor signaling pathway	3.24E-02
114	GO:0008380: RNA splicing	3.34E-02
115	GO:0010468: regulation of gene expression	3.34E-02
116	GO:0009414: response to water deprivation	3.40E-02
117	GO:0042742: defense response to bacterium	3.48E-02
118	GO:0009826: unidimensional cell growth	3.91E-02
119	GO:0009723: response to ethylene	4.45E-02
120	GO:0009409: response to cold	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0017103: UTP:galactose-1-phosphate uridylyltransferase activity	0.00E+00
2	GO:0047338: UTP:xylose-1-phosphate uridylyltransferase activity	0.00E+00
3	GO:0047350: glucuronate-1-phosphate uridylyltransferase activity	0.00E+00
4	GO:0090417: N-methylnicotinate transporter activity	0.00E+00
5	GO:0030621: U4 snRNA binding	0.00E+00
6	GO:0090416: nicotinate transporter activity	0.00E+00
7	GO:0010857: calcium-dependent protein kinase activity	0.00E+00
8	GO:0010491: UTP:arabinose-1-phosphate uridylyltransferase activity	0.00E+00
9	GO:0051748: UTP-monosaccharide-1-phosphate uridylyltransferase activity	0.00E+00
10	GO:0016301: kinase activity	3.46E-06
11	GO:0005524: ATP binding	2.01E-05
12	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	5.48E-05
13	GO:0004672: protein kinase activity	8.21E-05
14	GO:0019888: protein phosphatase regulator activity	8.50E-05
15	GO:0005388: calcium-transporting ATPase activity	8.50E-05
16	GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity	2.28E-04
17	GO:0004674: protein serine/threonine kinase activity	2.68E-04
18	GO:0015086: cadmium ion transmembrane transporter activity	3.33E-04
19	GO:0005253: anion channel activity	4.45E-04
20	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	4.45E-04
21	GO:0017070: U6 snRNA binding	5.66E-04
22	GO:0004709: MAP kinase kinase kinase activity	6.92E-04
23	GO:0019900: kinase binding	8.25E-04
24	GO:0005516: calmodulin binding	8.86E-04
25	GO:0004143: diacylglycerol kinase activity	9.62E-04
26	GO:0015140: malate transmembrane transporter activity	9.62E-04
27	GO:0035091: phosphatidylinositol binding	1.15E-03
28	GO:0003951: NAD+ kinase activity	1.26E-03
29	GO:0008142: oxysterol binding	1.26E-03
30	GO:0004430: 1-phosphatidylinositol 4-kinase activity	1.26E-03
31	GO:0003779: actin binding	1.94E-03
32	GO:0004521: endoribonuclease activity	2.11E-03
33	GO:0004842: ubiquitin-protein transferase activity	2.25E-03
34	GO:0003729: mRNA binding	2.52E-03
35	GO:0015144: carbohydrate transmembrane transporter activity	2.98E-03
36	GO:0005351: sugar:proton symporter activity	3.35E-03
37	GO:0004540: ribonuclease activity	3.54E-03
38	GO:0022891: substrate-specific transmembrane transporter activity	4.00E-03
39	GO:0008536: Ran GTPase binding	4.96E-03
40	GO:0046982: protein heterodimerization activity	5.18E-03
41	GO:0004518: nuclease activity	6.00E-03
42	GO:0009931: calcium-dependent protein serine/threonine kinase activity	7.99E-03
43	GO:0004683: calmodulin-dependent protein kinase activity	8.29E-03
44	GO:0005096: GTPase activator activity	9.22E-03
45	GO:0008270: zinc ion binding	9.80E-03
46	GO:0050897: cobalt ion binding	9.86E-03
47	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.12E-02
48	GO:0003777: microtubule motor activity	1.67E-02
49	GO:0031625: ubiquitin protein ligase binding	1.67E-02
50	GO:0022857: transmembrane transporter activity	1.91E-02
51	GO:0046872: metal ion binding	2.12E-02
52	GO:0030246: carbohydrate binding	2.31E-02
53	GO:0008565: protein transporter activity	2.66E-02
54	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.80E-02
55	GO:0008017: microtubule binding	3.04E-02
56	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.49E-02
57	GO:0005215: transporter activity	3.85E-02
58	GO:0043531: ADP binding	4.29E-02
59	GO:0061630: ubiquitin protein ligase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0043680: filiform apparatus	0.00E+00
2	GO:0045335: phagocytic vesicle	0.00E+00
3	GO:0005886: plasma membrane	1.14E-05
4	GO:0016442: RISC complex	5.48E-05
5	GO:0000159: protein phosphatase type 2A complex	6.26E-05
6	GO:0070062: extracellular exosome	3.33E-04
7	GO:0000145: exocyst	3.85E-04
8	GO:0030173: integral component of Golgi membrane	8.25E-04
9	GO:0046540: U4/U6 x U5 tri-snRNP complex	1.26E-03
10	GO:0010494: cytoplasmic stress granule	1.41E-03
11	GO:0005635: nuclear envelope	1.52E-03
12	GO:0048471: perinuclear region of cytoplasm	1.93E-03
13	GO:0009506: plasmodesma	2.41E-03
14	GO:0009524: phragmoplast	2.63E-03
15	GO:0030176: integral component of endoplasmic reticulum membrane	2.70E-03
16	GO:0016020: membrane	3.06E-03
17	GO:0005871: kinesin complex	4.47E-03
18	GO:0005768: endosome	6.23E-03
19	GO:0032580: Golgi cisterna membrane	6.55E-03
20	GO:0005778: peroxisomal membrane	6.83E-03
21	GO:0000932: P-body	7.40E-03
22	GO:0005643: nuclear pore	8.91E-03
23	GO:0005829: cytosol	1.01E-02
24	GO:0000786: nucleosome	1.02E-02
25	GO:0043231: intracellular membrane-bounded organelle	1.06E-02
26	GO:0090406: pollen tube	1.26E-02
27	GO:0005887: integral component of plasma membrane	1.31E-02
28	GO:0005681: spliceosomal complex	1.75E-02
29	GO:0016607: nuclear speck	1.79E-02
30	GO:0005783: endoplasmic reticulum	2.59E-02
31	GO:0009705: plant-type vacuole membrane	2.94E-02
32	GO:0005634: nucleus	4.25E-02
33	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.29E-02
34	GO:0005874: microtubule	4.56E-02