co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G02020

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010202: response to low fluence red light stimulus	0.00E+00
2	GO:0017012: protein-phytochromobilin linkage	0.00E+00
3	GO:0010265: SCF complex assembly	6.71E-06
4	GO:0006264: mitochondrial DNA replication	6.71E-06
5	GO:0033259: plastid DNA replication	6.71E-06
6	GO:0016560: protein import into peroxisome matrix, docking	1.83E-05
7	GO:0010617: circadian regulation of calcium ion oscillation	1.83E-05
8	GO:0009584: detection of visible light	5.17E-05
9	GO:0010148: transpiration	5.17E-05
10	GO:0006221: pyrimidine nucleotide biosynthetic process	7.23E-05
11	GO:0006625: protein targeting to peroxisome	7.23E-05
12	GO:0009649: entrainment of circadian clock	7.23E-05
13	GO:0044205: 'de novo' UMP biosynthetic process	7.23E-05
14	GO:0009687: abscisic acid metabolic process	7.23E-05
15	GO:0006751: glutathione catabolic process	1.20E-04
16	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.46E-04
17	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	1.74E-04
18	GO:0010374: stomatal complex development	1.74E-04
19	GO:0010161: red light signaling pathway	1.74E-04
20	GO:0009638: phototropism	2.95E-04
21	GO:0006325: chromatin organization	3.28E-04
22	GO:0006298: mismatch repair	3.28E-04
23	GO:2000028: regulation of photoperiodism, flowering	4.30E-04
24	GO:0009266: response to temperature stimulus	4.66E-04
25	GO:0007031: peroxisome organization	5.02E-04
26	GO:0080092: regulation of pollen tube growth	6.92E-04
27	GO:0010584: pollen exine formation	7.72E-04
28	GO:0042391: regulation of membrane potential	8.55E-04
29	GO:0010051: xylem and phloem pattern formation	8.55E-04
30	GO:0009630: gravitropism	1.07E-03
31	GO:0010029: regulation of seed germination	1.35E-03
32	GO:0018298: protein-chromophore linkage	1.55E-03
33	GO:0010218: response to far red light	1.65E-03
34	GO:0009867: jasmonic acid mediated signaling pathway	1.81E-03
35	GO:0045087: innate immune response	1.81E-03
36	GO:0009640: photomorphogenesis	2.14E-03
37	GO:0031347: regulation of defense response	2.43E-03
38	GO:0006260: DNA replication	2.43E-03
39	GO:0009585: red, far-red light phototransduction	2.62E-03
40	GO:0009620: response to fungus	3.12E-03
41	GO:0010228: vegetative to reproductive phase transition of meristem	4.97E-03
42	GO:0009617: response to bacterium	5.44E-03
43	GO:0009658: chloroplast organization	6.50E-03
44	GO:0015979: photosynthesis	8.28E-03
45	GO:0045892: negative regulation of transcription, DNA-templated	8.66E-03
46	GO:0009751: response to salicylic acid	9.82E-03
47	GO:0035556: intracellular signal transduction	1.55E-02
48	GO:0006468: protein phosphorylation	1.99E-02
49	GO:0071555: cell wall organization	2.46E-02
50	GO:0009733: response to auxin	2.67E-02
51	GO:0009409: response to cold	3.05E-02
52	GO:0005975: carbohydrate metabolic process	3.31E-02

Rank	GO Term	Adjusted P value
1	GO:0031517: red light photoreceptor activity	0.00E+00
2	GO:0004151: dihydroorotase activity	0.00E+00
3	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
4	GO:1990841: promoter-specific chromatin binding	6.71E-06
5	GO:0031516: far-red light photoreceptor activity	6.71E-06
6	GO:0009883: red or far-red light photoreceptor activity	1.83E-05
7	GO:0004557: alpha-galactosidase activity	3.35E-05
8	GO:0008020: G-protein coupled photoreceptor activity	3.35E-05
9	GO:0052692: raffinose alpha-galactosidase activity	3.35E-05
10	GO:0008409: 5'-3' exonuclease activity	7.23E-05
11	GO:0005261: cation channel activity	1.46E-04
12	GO:0004673: protein histidine kinase activity	3.28E-04
13	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.61E-04
14	GO:0000155: phosphorelay sensor kinase activity	4.30E-04
15	GO:0030552: cAMP binding	5.02E-04
16	GO:0030553: cGMP binding	5.02E-04
17	GO:0003887: DNA-directed DNA polymerase activity	5.39E-04
18	GO:0005216: ion channel activity	6.14E-04
19	GO:0004871: signal transducer activity	6.47E-04
20	GO:0005102: receptor binding	8.13E-04
21	GO:0030551: cyclic nucleotide binding	8.55E-04
22	GO:0005249: voltage-gated potassium channel activity	8.55E-04
23	GO:0003684: damaged DNA binding	1.16E-03
24	GO:0016597: amino acid binding	1.25E-03
25	GO:0030247: polysaccharide binding	1.45E-03
26	GO:0008236: serine-type peptidase activity	1.50E-03
27	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.92E-03
28	GO:0004185: serine-type carboxypeptidase activity	2.14E-03
29	GO:0008565: protein transporter activity	4.37E-03
30	GO:0042802: identical protein binding	5.68E-03
31	GO:0042803: protein homodimerization activity	8.84E-03
32	GO:0005524: ATP binding	1.92E-02
33	GO:0005516: calmodulin binding	1.99E-02
34	GO:0005509: calcium ion binding	2.32E-02
35	GO:0005515: protein binding	2.96E-02
36	GO:0004672: protein kinase activity	3.23E-02
37	GO:0003729: mRNA binding	3.27E-02
38	GO:0016787: hydrolase activity	4.24E-02

Rank	GO Term	Adjusted P value
1	GO:1990429: peroxisomal importomer complex	6.71E-06
2	GO:0016604: nuclear body	2.95E-04
3	GO:0005764: lysosome	4.66E-04
4	GO:0005778: peroxisomal membrane	1.20E-03
5	GO:0005829: cytosol	2.69E-03
6	GO:0016607: nuclear speck	2.99E-03
7	GO:0009536: plastid	3.16E-03
8	GO:0005618: cell wall	1.01E-02
9	GO:0005887: integral component of plasma membrane	1.23E-02
10	GO:0005739: mitochondrion	1.30E-02
11	GO:0005886: plasma membrane	1.32E-02
12	GO:0005777: peroxisome	1.64E-02
13	GO:0005783: endoplasmic reticulum	1.80E-02
14	GO:0009505: plant-type cell wall	2.89E-02
15	GO:0009535: chloroplast thylakoid membrane	4.37E-02
16	GO:0005794: Golgi apparatus	4.61E-02