co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G01995

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
2	GO:2000505: regulation of energy homeostasis	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
6	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
7	GO:0005996: monosaccharide metabolic process	0.00E+00
8	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
9	GO:0017038: protein import	0.00E+00
10	GO:0090042: tubulin deacetylation	0.00E+00
11	GO:0006114: glycerol biosynthetic process	0.00E+00
12	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
13	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
14	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
15	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
16	GO:0015979: photosynthesis	2.95E-11
17	GO:0010027: thylakoid membrane organization	1.15E-09
18	GO:0032544: plastid translation	8.82E-08
19	GO:0009773: photosynthetic electron transport in photosystem I	4.60E-07
20	GO:0018026: peptidyl-lysine monomethylation	3.13E-06
21	GO:0006000: fructose metabolic process	1.13E-05
22	GO:0015995: chlorophyll biosynthetic process	5.34E-05
23	GO:0009658: chloroplast organization	6.32E-05
24	GO:0006418: tRNA aminoacylation for protein translation	9.40E-05
25	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.07E-04
26	GO:0010190: cytochrome b6f complex assembly	1.07E-04
27	GO:0061077: chaperone-mediated protein folding	1.09E-04
28	GO:0010196: nonphotochemical quenching	1.93E-04
29	GO:0009642: response to light intensity	2.45E-04
30	GO:0046167: glycerol-3-phosphate biosynthetic process	2.60E-04
31	GO:0043007: maintenance of rDNA	2.60E-04
32	GO:0034337: RNA folding	2.60E-04
33	GO:0006438: valyl-tRNA aminoacylation	2.60E-04
34	GO:0000476: maturation of 4.5S rRNA	2.60E-04
35	GO:0000967: rRNA 5'-end processing	2.60E-04
36	GO:0046520: sphingoid biosynthetic process	2.60E-04
37	GO:0000481: maturation of 5S rRNA	2.60E-04
38	GO:0042371: vitamin K biosynthetic process	2.60E-04
39	GO:0043686: co-translational protein modification	2.60E-04
40	GO:0043609: regulation of carbon utilization	2.60E-04
41	GO:0006002: fructose 6-phosphate metabolic process	3.02E-04
42	GO:0009657: plastid organization	3.02E-04
43	GO:0010206: photosystem II repair	3.65E-04
44	GO:0030388: fructose 1,6-bisphosphate metabolic process	5.74E-04
45	GO:0034470: ncRNA processing	5.74E-04
46	GO:0006650: glycerophospholipid metabolic process	5.74E-04
47	GO:0090342: regulation of cell aging	5.74E-04
48	GO:0097054: L-glutamate biosynthetic process	5.74E-04
49	GO:0006415: translational termination	5.84E-04
50	GO:0043085: positive regulation of catalytic activity	5.84E-04
51	GO:0016311: dephosphorylation	6.33E-04
52	GO:0019253: reductive pentose-phosphate cycle	8.52E-04
53	GO:0046168: glycerol-3-phosphate catabolic process	9.31E-04
54	GO:0090391: granum assembly	9.31E-04
55	GO:0006518: peptide metabolic process	9.31E-04
56	GO:0071492: cellular response to UV-A	9.31E-04
57	GO:0034599: cellular response to oxidative stress	9.59E-04
58	GO:0009768: photosynthesis, light harvesting in photosystem I	1.28E-03
59	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.33E-03
60	GO:0006020: inositol metabolic process	1.33E-03
61	GO:0006072: glycerol-3-phosphate metabolic process	1.33E-03
62	GO:0006537: glutamate biosynthetic process	1.33E-03
63	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.33E-03
64	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.33E-03
65	GO:0010109: regulation of photosynthesis	1.78E-03
66	GO:0019676: ammonia assimilation cycle	1.78E-03
67	GO:0015976: carbon utilization	1.78E-03
68	GO:0071486: cellular response to high light intensity	1.78E-03
69	GO:0006109: regulation of carbohydrate metabolic process	1.78E-03
70	GO:0045727: positive regulation of translation	1.78E-03
71	GO:0015994: chlorophyll metabolic process	1.78E-03
72	GO:0051205: protein insertion into membrane	1.78E-03
73	GO:0006546: glycine catabolic process	1.78E-03
74	GO:0006021: inositol biosynthetic process	1.78E-03
75	GO:0010021: amylopectin biosynthetic process	1.78E-03
76	GO:0006808: regulation of nitrogen utilization	1.78E-03
77	GO:0016117: carotenoid biosynthetic process	1.97E-03
78	GO:0009793: embryo development ending in seed dormancy	2.16E-03
79	GO:0016123: xanthophyll biosynthetic process	2.27E-03
80	GO:0000304: response to singlet oxygen	2.27E-03
81	GO:0032543: mitochondrial translation	2.27E-03
82	GO:0010236: plastoquinone biosynthetic process	2.27E-03
83	GO:0045038: protein import into chloroplast thylakoid membrane	2.27E-03
84	GO:0031365: N-terminal protein amino acid modification	2.27E-03
85	GO:0006412: translation	2.28E-03
86	GO:0006662: glycerol ether metabolic process	2.29E-03
87	GO:0055114: oxidation-reduction process	2.32E-03
88	GO:0042549: photosystem II stabilization	2.80E-03
89	GO:0042793: transcription from plastid promoter	2.80E-03
90	GO:0046855: inositol phosphate dephosphorylation	2.80E-03
91	GO:0042026: protein refolding	3.36E-03
92	GO:0042372: phylloquinone biosynthetic process	3.36E-03
93	GO:0006458: 'de novo' protein folding	3.36E-03
94	GO:0030488: tRNA methylation	3.36E-03
95	GO:0009772: photosynthetic electron transport in photosystem II	3.97E-03
96	GO:0009645: response to low light intensity stimulus	3.97E-03
97	GO:0000105: histidine biosynthetic process	4.60E-03
98	GO:0005978: glycogen biosynthetic process	4.60E-03
99	GO:0006605: protein targeting	4.60E-03
100	GO:0032508: DNA duplex unwinding	4.60E-03
101	GO:0017004: cytochrome complex assembly	5.27E-03
102	GO:0071482: cellular response to light stimulus	5.27E-03
103	GO:0018298: protein-chromophore linkage	5.32E-03
104	GO:0005982: starch metabolic process	6.71E-03
105	GO:0019684: photosynthesis, light reaction	8.27E-03
106	GO:0009089: lysine biosynthetic process via diaminopimelate	8.27E-03
107	GO:0009073: aromatic amino acid family biosynthetic process	8.27E-03
108	GO:0000272: polysaccharide catabolic process	8.27E-03
109	GO:0018119: peptidyl-cysteine S-nitrosylation	8.27E-03
110	GO:0006790: sulfur compound metabolic process	9.09E-03
111	GO:0005983: starch catabolic process	9.09E-03
112	GO:0009644: response to high light intensity	9.42E-03
113	GO:0006094: gluconeogenesis	9.94E-03
114	GO:0005986: sucrose biosynthetic process	9.94E-03
115	GO:0006006: glucose metabolic process	9.94E-03
116	GO:0042254: ribosome biogenesis	1.02E-02
117	GO:0009735: response to cytokinin	1.08E-02
118	GO:0010207: photosystem II assembly	1.08E-02
119	GO:0005985: sucrose metabolic process	1.17E-02
120	GO:0046854: phosphatidylinositol phosphorylation	1.17E-02
121	GO:0006364: rRNA processing	1.18E-02
122	GO:0000162: tryptophan biosynthetic process	1.27E-02
123	GO:0006096: glycolytic process	1.39E-02
124	GO:0008299: isoprenoid biosynthetic process	1.46E-02
125	GO:0016575: histone deacetylation	1.46E-02
126	GO:0010431: seed maturation	1.56E-02
127	GO:0019915: lipid storage	1.56E-02
128	GO:0031408: oxylipin biosynthetic process	1.56E-02
129	GO:0045454: cell redox homeostasis	1.64E-02
130	GO:0006396: RNA processing	1.73E-02
131	GO:0009561: megagametogenesis	1.88E-02
132	GO:0009409: response to cold	1.90E-02
133	GO:0042631: cellular response to water deprivation	2.11E-02
134	GO:0006810: transport	2.18E-02
135	GO:0009646: response to absence of light	2.34E-02
136	GO:0009790: embryo development	2.46E-02
137	GO:0019252: starch biosynthetic process	2.46E-02
138	GO:0008654: phospholipid biosynthetic process	2.46E-02
139	GO:0071554: cell wall organization or biogenesis	2.58E-02
140	GO:0000302: response to reactive oxygen species	2.58E-02
141	GO:1901657: glycosyl compound metabolic process	2.83E-02
142	GO:0010090: trichome morphogenesis	2.83E-02
143	GO:0009817: defense response to fungus, incompatible interaction	4.05E-02
144	GO:0006499: N-terminal protein myristoylation	4.34E-02
145	GO:0010218: response to far red light	4.34E-02
146	GO:0009416: response to light stimulus	4.35E-02
147	GO:0009637: response to blue light	4.79E-02
148	GO:0009853: photorespiration	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
2	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
3	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
4	GO:0090711: FMN hydrolase activity	0.00E+00
5	GO:0051721: protein phosphatase 2A binding	0.00E+00
6	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
7	GO:0042903: tubulin deacetylase activity	0.00E+00
8	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
9	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
10	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
11	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
12	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
13	GO:0043014: alpha-tubulin binding	0.00E+00
14	GO:0004823: leucine-tRNA ligase activity	0.00E+00
15	GO:0046408: chlorophyll synthetase activity	0.00E+00
16	GO:0005528: FK506 binding	6.22E-10
17	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.62E-08
18	GO:0016851: magnesium chelatase activity	2.55E-05
19	GO:0016149: translation release factor activity, codon specific	2.55E-05
20	GO:0016279: protein-lysine N-methyltransferase activity	4.61E-05
21	GO:0019843: rRNA binding	9.17E-05
22	GO:2001070: starch binding	1.07E-04
23	GO:0004812: aminoacyl-tRNA ligase activity	1.79E-04
24	GO:0000170: sphingosine hydroxylase activity	2.60E-04
25	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.60E-04
26	GO:0050308: sugar-phosphatase activity	2.60E-04
27	GO:0042586: peptide deformylase activity	2.60E-04
28	GO:0019203: carbohydrate phosphatase activity	2.60E-04
29	GO:0004832: valine-tRNA ligase activity	2.60E-04
30	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.60E-04
31	GO:0016041: glutamate synthase (ferredoxin) activity	2.60E-04
32	GO:0003747: translation release factor activity	3.65E-04
33	GO:0051082: unfolded protein binding	4.64E-04
34	GO:0008047: enzyme activator activity	5.06E-04
35	GO:0016168: chlorophyll binding	5.18E-04
36	GO:0047746: chlorophyllase activity	5.74E-04
37	GO:0010297: heteropolysaccharide binding	5.74E-04
38	GO:0004047: aminomethyltransferase activity	5.74E-04
39	GO:0052832: inositol monophosphate 3-phosphatase activity	5.74E-04
40	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	5.74E-04
41	GO:0042284: sphingolipid delta-4 desaturase activity	5.74E-04
42	GO:0008934: inositol monophosphate 1-phosphatase activity	5.74E-04
43	GO:0052833: inositol monophosphate 4-phosphatase activity	5.74E-04
44	GO:0003844: 1,4-alpha-glucan branching enzyme activity	5.74E-04
45	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.74E-04
46	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.74E-04
47	GO:0010291: carotene beta-ring hydroxylase activity	5.74E-04
48	GO:0016787: hydrolase activity	5.95E-04
49	GO:0031072: heat shock protein binding	7.57E-04
50	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.31E-04
51	GO:0015462: ATPase-coupled protein transmembrane transporter activity	9.31E-04
52	GO:0043169: cation binding	9.31E-04
53	GO:0017150: tRNA dihydrouridine synthase activity	9.31E-04
54	GO:0002161: aminoacyl-tRNA editing activity	9.31E-04
55	GO:0004751: ribose-5-phosphate isomerase activity	9.31E-04
56	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	9.31E-04
57	GO:0070402: NADPH binding	9.31E-04
58	GO:0031409: pigment binding	1.05E-03
59	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.33E-03
60	GO:0048487: beta-tubulin binding	1.33E-03
61	GO:0043023: ribosomal large subunit binding	1.33E-03
62	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.78E-03
63	GO:0004045: aminoacyl-tRNA hydrolase activity	1.78E-03
64	GO:0004659: prenyltransferase activity	1.78E-03
65	GO:0047134: protein-disulfide reductase activity	1.97E-03
66	GO:0004040: amidase activity	2.27E-03
67	GO:0051538: 3 iron, 4 sulfur cluster binding	2.27E-03
68	GO:0004791: thioredoxin-disulfide reductase activity	2.47E-03
69	GO:0004130: cytochrome-c peroxidase activity	2.80E-03
70	GO:0016688: L-ascorbate peroxidase activity	2.80E-03
71	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.22E-03
72	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.36E-03
73	GO:0004017: adenylate kinase activity	3.36E-03
74	GO:0004033: aldo-keto reductase (NADP) activity	4.60E-03
75	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	5.27E-03
76	GO:0008173: RNA methyltransferase activity	5.27E-03
77	GO:0016491: oxidoreductase activity	5.89E-03
78	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.98E-03
79	GO:0003993: acid phosphatase activity	7.05E-03
80	GO:0044183: protein binding involved in protein folding	8.27E-03
81	GO:0043621: protein self-association	9.42E-03
82	GO:0005198: structural molecule activity	9.79E-03
83	GO:0004089: carbonate dehydratase activity	9.94E-03
84	GO:0004565: beta-galactosidase activity	9.94E-03
85	GO:0051287: NAD binding	1.06E-02
86	GO:0003887: DNA-directed DNA polymerase activity	1.27E-02
87	GO:0003735: structural constituent of ribosome	1.31E-02
88	GO:0004857: enzyme inhibitor activity	1.36E-02
89	GO:0004407: histone deacetylase activity	1.36E-02
90	GO:0015035: protein disulfide oxidoreductase activity	1.73E-02
91	GO:0022891: substrate-specific transmembrane transporter activity	1.77E-02
92	GO:0003756: protein disulfide isomerase activity	1.88E-02
93	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.16E-02
94	GO:0016853: isomerase activity	2.34E-02
95	GO:0050662: coenzyme binding	2.34E-02
96	GO:0048038: quinone binding	2.58E-02
97	GO:0003684: damaged DNA binding	2.96E-02
98	GO:0008483: transaminase activity	3.09E-02
99	GO:0046872: metal ion binding	3.15E-02
100	GO:0016413: O-acetyltransferase activity	3.22E-02
101	GO:0003723: RNA binding	3.55E-02
102	GO:0102483: scopolin beta-glucosidase activity	3.77E-02
103	GO:0004721: phosphoprotein phosphatase activity	3.77E-02
104	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.05E-02
105	GO:0015238: drug transmembrane transporter activity	4.20E-02
106	GO:0004222: metalloendopeptidase activity	4.34E-02
107	GO:0000287: magnesium ion binding	4.39E-02
108	GO:0030145: manganese ion binding	4.49E-02
109	GO:0003746: translation elongation factor activity	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0009507: chloroplast	1.08E-80
3	GO:0009570: chloroplast stroma	8.68E-38
4	GO:0009535: chloroplast thylakoid membrane	1.95E-36
5	GO:0009534: chloroplast thylakoid	9.20E-33
6	GO:0009941: chloroplast envelope	3.27E-21
7	GO:0009543: chloroplast thylakoid lumen	5.53E-19
8	GO:0009579: thylakoid	2.50E-13
9	GO:0031977: thylakoid lumen	4.38E-10
10	GO:0000427: plastid-encoded plastid RNA polymerase complex	3.13E-06
11	GO:0010287: plastoglobule	6.91E-06
12	GO:0010007: magnesium chelatase complex	1.13E-05
13	GO:0031969: chloroplast membrane	1.30E-05
14	GO:0030095: chloroplast photosystem II	4.83E-05
15	GO:0009654: photosystem II oxygen evolving complex	9.40E-05
16	GO:0009782: photosystem I antenna complex	2.60E-04
17	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.60E-04
18	GO:0009515: granal stacked thylakoid	2.60E-04
19	GO:0019898: extrinsic component of membrane	2.70E-04
20	GO:0005840: ribosome	3.16E-04
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.65E-04
22	GO:0009508: plastid chromosome	7.57E-04
23	GO:0030076: light-harvesting complex	9.50E-04
24	GO:0042651: thylakoid membrane	1.28E-03
25	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.33E-03
26	GO:0016272: prefoldin complex	3.36E-03
27	GO:0010319: stromule	3.64E-03
28	GO:0009295: nucleoid	3.64E-03
29	GO:0009501: amyloplast	4.60E-03
30	GO:0009538: photosystem I reaction center	4.60E-03
31	GO:0048046: apoplast	6.30E-03
32	GO:0032040: small-subunit processome	9.09E-03
33	GO:0043234: protein complex	1.27E-02
34	GO:0015935: small ribosomal subunit	1.56E-02
35	GO:0009706: chloroplast inner membrane	1.68E-02
36	GO:0005623: cell	2.16E-02
37	GO:0009522: photosystem I	2.34E-02
38	GO:0009523: photosystem II	2.46E-02
39	GO:0030529: intracellular ribonucleoprotein complex	3.35E-02