co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G01800

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0034337: RNA folding	0.00E+00
2	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
3	GO:2000505: regulation of energy homeostasis	0.00E+00
4	GO:0061635: regulation of protein complex stability	0.00E+00
5	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
6	GO:0005996: monosaccharide metabolic process	0.00E+00
7	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
8	GO:0016118: carotenoid catabolic process	0.00E+00
9	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
10	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
11	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
12	GO:0015979: photosynthesis	1.38E-13
13	GO:0009773: photosynthetic electron transport in photosystem I	1.90E-09
14	GO:0006000: fructose metabolic process	1.06E-08
15	GO:0010196: nonphotochemical quenching	1.25E-08
16	GO:0010027: thylakoid membrane organization	1.54E-08
17	GO:0006021: inositol biosynthetic process	1.51E-07
18	GO:0006094: gluconeogenesis	3.88E-07
19	GO:0019253: reductive pentose-phosphate cycle	5.20E-07
20	GO:0018298: protein-chromophore linkage	1.32E-06
21	GO:0009768: photosynthesis, light harvesting in photosystem I	1.43E-06
22	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.93E-06
23	GO:0006002: fructose 6-phosphate metabolic process	4.29E-06
24	GO:0010206: photosystem II repair	6.03E-06
25	GO:0006096: glycolytic process	1.56E-05
26	GO:0006006: glucose metabolic process	2.22E-05
27	GO:0010207: photosystem II assembly	2.72E-05
28	GO:0016123: xanthophyll biosynthetic process	4.82E-05
29	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	7.11E-05
30	GO:0016117: carotenoid biosynthetic process	1.07E-04
31	GO:0019252: starch biosynthetic process	1.64E-04
32	GO:0005978: glycogen biosynthetic process	1.67E-04
33	GO:0009642: response to light intensity	1.67E-04
34	GO:0031998: regulation of fatty acid beta-oxidation	2.02E-04
35	GO:0006438: valyl-tRNA aminoacylation	2.02E-04
36	GO:0000481: maturation of 5S rRNA	2.02E-04
37	GO:0006659: phosphatidylserine biosynthetic process	2.02E-04
38	GO:0080093: regulation of photorespiration	2.02E-04
39	GO:0043609: regulation of carbon utilization	2.02E-04
40	GO:0043007: maintenance of rDNA	2.02E-04
41	GO:0032544: plastid translation	2.08E-04
42	GO:0006098: pentose-phosphate shunt	2.53E-04
43	GO:0009793: embryo development ending in seed dormancy	2.65E-04
44	GO:0015995: chlorophyll biosynthetic process	3.73E-04
45	GO:0043085: positive regulation of catalytic activity	4.10E-04
46	GO:0006729: tetrahydrobiopterin biosynthetic process	4.52E-04
47	GO:0016121: carotene catabolic process	4.52E-04
48	GO:0016560: protein import into peroxisome matrix, docking	4.52E-04
49	GO:0016124: xanthophyll catabolic process	4.52E-04
50	GO:0019388: galactose catabolic process	4.52E-04
51	GO:0006432: phenylalanyl-tRNA aminoacylation	4.52E-04
52	GO:0090342: regulation of cell aging	4.52E-04
53	GO:0097054: L-glutamate biosynthetic process	4.52E-04
54	GO:0006790: sulfur compound metabolic process	4.70E-04
55	GO:0005986: sucrose biosynthetic process	5.33E-04
56	GO:0046854: phosphatidylinositol phosphorylation	6.71E-04
57	GO:0090391: granum assembly	7.36E-04
58	GO:0006518: peptide metabolic process	7.36E-04
59	GO:0016050: vesicle organization	7.36E-04
60	GO:0006636: unsaturated fatty acid biosynthetic process	7.47E-04
61	GO:0010114: response to red light	7.94E-04
62	GO:0009409: response to cold	8.75E-04
63	GO:0006418: tRNA aminoacylation for protein translation	9.08E-04
64	GO:0006020: inositol metabolic process	1.05E-03
65	GO:0006537: glutamate biosynthetic process	1.05E-03
66	GO:0009590: detection of gravity	1.05E-03
67	GO:0006515: misfolded or incompletely synthesized protein catabolic process	1.05E-03
68	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.05E-03
69	GO:0055114: oxidation-reduction process	1.16E-03
70	GO:0019676: ammonia assimilation cycle	1.40E-03
71	GO:0015976: carbon utilization	1.40E-03
72	GO:0006109: regulation of carbohydrate metabolic process	1.40E-03
73	GO:0045727: positive regulation of translation	1.40E-03
74	GO:0015994: chlorophyll metabolic process	1.40E-03
75	GO:0051205: protein insertion into membrane	1.40E-03
76	GO:0010021: amylopectin biosynthetic process	1.40E-03
77	GO:0006662: glycerol ether metabolic process	1.61E-03
78	GO:0042742: defense response to bacterium	1.65E-03
79	GO:0006814: sodium ion transport	1.72E-03
80	GO:0016120: carotene biosynthetic process	1.78E-03
81	GO:0032543: mitochondrial translation	1.78E-03
82	GO:0010236: plastoquinone biosynthetic process	1.78E-03
83	GO:0045038: protein import into chloroplast thylakoid membrane	1.78E-03
84	GO:0006097: glyoxylate cycle	1.78E-03
85	GO:0008654: phospholipid biosynthetic process	1.85E-03
86	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.19E-03
87	GO:0000470: maturation of LSU-rRNA	2.19E-03
88	GO:0046855: inositol phosphate dephosphorylation	2.19E-03
89	GO:1901259: chloroplast rRNA processing	2.63E-03
90	GO:0030488: tRNA methylation	2.63E-03
91	GO:0010189: vitamin E biosynthetic process	2.63E-03
92	GO:0009772: photosynthetic electron transport in photosystem II	3.09E-03
93	GO:0071446: cellular response to salicylic acid stimulus	3.09E-03
94	GO:0009645: response to low light intensity stimulus	3.09E-03
95	GO:0032508: DNA duplex unwinding	3.59E-03
96	GO:0010218: response to far red light	4.08E-03
97	GO:2000031: regulation of salicylic acid mediated signaling pathway	4.10E-03
98	GO:0071482: cellular response to light stimulus	4.10E-03
99	GO:0009657: plastid organization	4.10E-03
100	GO:0009637: response to blue light	4.69E-03
101	GO:0034599: cellular response to oxidative stress	4.90E-03
102	GO:0005982: starch metabolic process	5.21E-03
103	GO:0010205: photoinhibition	5.21E-03
104	GO:0009688: abscisic acid biosynthetic process	5.80E-03
105	GO:0048829: root cap development	5.80E-03
106	GO:0009744: response to sucrose	6.04E-03
107	GO:0006412: translation	6.14E-03
108	GO:0009735: response to cytokinin	6.19E-03
109	GO:0042254: ribosome biogenesis	6.38E-03
110	GO:0009073: aromatic amino acid family biosynthetic process	6.41E-03
111	GO:0006415: translational termination	6.41E-03
112	GO:0000272: polysaccharide catabolic process	6.41E-03
113	GO:0018119: peptidyl-cysteine S-nitrosylation	6.41E-03
114	GO:0016485: protein processing	6.41E-03
115	GO:0009644: response to high light intensity	6.53E-03
116	GO:0045037: protein import into chloroplast stroma	7.04E-03
117	GO:0009767: photosynthetic electron transport chain	7.70E-03
118	GO:0010628: positive regulation of gene expression	7.70E-03
119	GO:0006108: malate metabolic process	7.70E-03
120	GO:0005985: sucrose metabolic process	9.07E-03
121	GO:0045454: cell redox homeostasis	1.03E-02
122	GO:0008299: isoprenoid biosynthetic process	1.13E-02
123	GO:0006810: transport	1.16E-02
124	GO:0061077: chaperone-mediated protein folding	1.21E-02
125	GO:0016226: iron-sulfur cluster assembly	1.29E-02
126	GO:0040007: growth	1.37E-02
127	GO:0009561: megagametogenesis	1.45E-02
128	GO:0042631: cellular response to water deprivation	1.62E-02
129	GO:0010182: sugar mediated signaling pathway	1.71E-02
130	GO:0006633: fatty acid biosynthetic process	1.83E-02
131	GO:0009791: post-embryonic development	1.89E-02
132	GO:0051607: defense response to virus	2.48E-02
133	GO:0009416: response to light stimulus	2.77E-02
134	GO:0016311: dephosphorylation	3.01E-02
135	GO:0009658: chloroplast organization	3.12E-02
136	GO:0009834: plant-type secondary cell wall biogenesis	3.35E-02
137	GO:0006499: N-terminal protein myristoylation	3.35E-02
138	GO:0048527: lateral root development	3.46E-02
139	GO:0009631: cold acclimation	3.46E-02
140	GO:0009853: photorespiration	3.69E-02
141	GO:0016051: carbohydrate biosynthetic process	3.69E-02
142	GO:0005975: carbohydrate metabolic process	3.79E-02
143	GO:0006099: tricarboxylic acid cycle	3.81E-02
144	GO:0046686: response to cadmium ion	3.93E-02
145	GO:0042542: response to hydrogen peroxide	4.30E-02
146	GO:0006855: drug transmembrane transport	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
2	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
3	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
4	GO:0016166: phytoene dehydrogenase activity	0.00E+00
5	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
6	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
7	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
8	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
9	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
10	GO:0004823: leucine-tRNA ligase activity	0.00E+00
11	GO:0046408: chlorophyll synthetase activity	0.00E+00
12	GO:0019843: rRNA binding	5.50E-09
13	GO:0031409: pigment binding	8.88E-07
14	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.93E-06
15	GO:0004512: inositol-3-phosphate synthase activity	1.93E-06
16	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	1.93E-06
17	GO:0016851: magnesium chelatase activity	1.63E-05
18	GO:0016168: chlorophyll binding	2.12E-05
19	GO:0004332: fructose-bisphosphate aldolase activity	7.11E-05
20	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	9.88E-05
21	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.02E-04
22	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.02E-04
23	GO:0045485: omega-6 fatty acid desaturase activity	2.02E-04
24	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.02E-04
25	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	2.02E-04
26	GO:0004832: valine-tRNA ligase activity	2.02E-04
27	GO:0016041: glutamate synthase (ferredoxin) activity	2.02E-04
28	GO:0071949: FAD binding	2.53E-04
29	GO:0008047: enzyme activator activity	3.54E-04
30	GO:0010297: heteropolysaccharide binding	4.52E-04
31	GO:0052832: inositol monophosphate 3-phosphatase activity	4.52E-04
32	GO:0004312: fatty acid synthase activity	4.52E-04
33	GO:0008934: inositol monophosphate 1-phosphatase activity	4.52E-04
34	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.52E-04
35	GO:0052833: inositol monophosphate 4-phosphatase activity	4.52E-04
36	GO:0004826: phenylalanine-tRNA ligase activity	4.52E-04
37	GO:0004614: phosphoglucomutase activity	4.52E-04
38	GO:0008967: phosphoglycolate phosphatase activity	4.52E-04
39	GO:0010291: carotene beta-ring hydroxylase activity	4.52E-04
40	GO:0047746: chlorophyllase activity	4.52E-04
41	GO:0031072: heat shock protein binding	5.33E-04
42	GO:0008266: poly(U) RNA binding	6.01E-04
43	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	7.36E-04
44	GO:0004324: ferredoxin-NADP+ reductase activity	7.36E-04
45	GO:0043169: cation binding	7.36E-04
46	GO:0003913: DNA photolyase activity	7.36E-04
47	GO:0002161: aminoacyl-tRNA editing activity	7.36E-04
48	GO:0070402: NADPH binding	7.36E-04
49	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.36E-04
50	GO:0005528: FK506 binding	8.26E-04
51	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.05E-03
52	GO:0008508: bile acid:sodium symporter activity	1.05E-03
53	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.05E-03
54	GO:0016149: translation release factor activity, codon specific	1.05E-03
55	GO:0004812: aminoacyl-tRNA ligase activity	1.38E-03
56	GO:0047134: protein-disulfide reductase activity	1.38E-03
57	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.40E-03
58	GO:0004791: thioredoxin-disulfide reductase activity	1.72E-03
59	GO:0003959: NADPH dehydrogenase activity	1.78E-03
60	GO:0004040: amidase activity	1.78E-03
61	GO:0051538: 3 iron, 4 sulfur cluster binding	1.78E-03
62	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	1.78E-03
63	GO:0003735: structural constituent of ribosome	2.03E-03
64	GO:2001070: starch binding	2.19E-03
65	GO:0042578: phosphoric ester hydrolase activity	2.19E-03
66	GO:0016615: malate dehydrogenase activity	2.19E-03
67	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.25E-03
68	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.46E-03
69	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.63E-03
70	GO:0004017: adenylate kinase activity	2.63E-03
71	GO:0030060: L-malate dehydrogenase activity	2.63E-03
72	GO:0016491: oxidoreductase activity	2.86E-03
73	GO:0009881: photoreceptor activity	3.09E-03
74	GO:0008236: serine-type peptidase activity	3.52E-03
75	GO:0004033: aldo-keto reductase (NADP) activity	3.59E-03
76	GO:0008173: RNA methyltransferase activity	4.10E-03
77	GO:0003747: translation release factor activity	4.65E-03
78	GO:0046872: metal ion binding	4.72E-03
79	GO:0050661: NADP binding	5.34E-03
80	GO:0000049: tRNA binding	7.04E-03
81	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	7.05E-03
82	GO:0051287: NAD binding	7.31E-03
83	GO:0016787: hydrolase activity	7.42E-03
84	GO:0004565: beta-galactosidase activity	7.70E-03
85	GO:0005315: inorganic phosphate transmembrane transporter activity	7.70E-03
86	GO:0004089: carbonate dehydratase activity	7.70E-03
87	GO:0051536: iron-sulfur cluster binding	1.05E-02
88	GO:0004857: enzyme inhibitor activity	1.05E-02
89	GO:0051082: unfolded protein binding	1.16E-02
90	GO:0015035: protein disulfide oxidoreductase activity	1.20E-02
91	GO:0004176: ATP-dependent peptidase activity	1.21E-02
92	GO:0008514: organic anion transmembrane transporter activity	1.45E-02
93	GO:0003756: protein disulfide isomerase activity	1.45E-02
94	GO:0004252: serine-type endopeptidase activity	1.62E-02
95	GO:0016853: isomerase activity	1.80E-02
96	GO:0050662: coenzyme binding	1.80E-02
97	GO:0048038: quinone binding	1.99E-02
98	GO:0004721: phosphoprotein phosphatase activity	2.90E-02
99	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.01E-02
100	GO:0000287: magnesium ion binding	3.06E-02
101	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.12E-02
102	GO:0015238: drug transmembrane transporter activity	3.23E-02
103	GO:0004222: metalloendopeptidase activity	3.35E-02
104	GO:0030145: manganese ion binding	3.46E-02
105	GO:0005515: protein binding	3.56E-02
106	GO:0003746: translation elongation factor activity	3.69E-02
107	GO:0003993: acid phosphatase activity	3.81E-02
108	GO:0004497: monooxygenase activity	3.86E-02
109	GO:0015293: symporter activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0009783: photosystem II antenna complex	0.00E+00
3	GO:0043233: organelle lumen	0.00E+00
4	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
5	GO:0009507: chloroplast	2.26E-71
6	GO:0009534: chloroplast thylakoid	6.36E-49
7	GO:0009941: chloroplast envelope	1.26E-40
8	GO:0009570: chloroplast stroma	5.14E-39
9	GO:0009535: chloroplast thylakoid membrane	2.96E-35
10	GO:0009579: thylakoid	7.50E-23
11	GO:0009543: chloroplast thylakoid lumen	1.64E-13
12	GO:0031977: thylakoid lumen	2.04E-12
13	GO:0010287: plastoglobule	4.49E-12
14	GO:0009522: photosystem I	1.55E-07
15	GO:0048046: apoplast	4.77E-07
16	GO:0009706: chloroplast inner membrane	1.41E-06
17	GO:0005840: ribosome	2.67E-06
18	GO:0031969: chloroplast membrane	4.00E-06
19	GO:0010007: magnesium chelatase complex	7.09E-06
20	GO:0010319: stromule	1.48E-05
21	GO:0030076: light-harvesting complex	3.29E-05
22	GO:0042651: thylakoid membrane	5.45E-05
23	GO:0009782: photosystem I antenna complex	2.02E-04
24	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.02E-04
25	GO:0009515: granal stacked thylakoid	2.02E-04
26	GO:0009547: plastid ribosome	2.02E-04
27	GO:0016020: membrane	2.32E-04
28	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.53E-04
29	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.52E-04
30	GO:0030093: chloroplast photosystem I	4.52E-04
31	GO:0032040: small-subunit processome	4.70E-04
32	GO:0009508: plastid chromosome	5.33E-04
33	GO:0030095: chloroplast photosystem II	6.01E-04
34	GO:0005782: peroxisomal matrix	7.36E-04
35	GO:0009509: chromoplast	7.36E-04
36	GO:0009654: photosystem II oxygen evolving complex	9.08E-04
37	GO:0009517: PSII associated light-harvesting complex II	1.40E-03
38	GO:0019898: extrinsic component of membrane	1.85E-03
39	GO:0005623: cell	2.46E-03
40	GO:0009295: nucleoid	2.54E-03
41	GO:0009533: chloroplast stromal thylakoid	3.09E-03
42	GO:0009501: amyloplast	3.59E-03
43	GO:0009538: photosystem I reaction center	3.59E-03
44	GO:0000311: plastid large ribosomal subunit	7.04E-03
45	GO:0005759: mitochondrial matrix	1.83E-02
46	GO:0022626: cytosolic ribosome	2.62E-02
47	GO:0009536: plastid	2.78E-02
48	GO:0005777: peroxisome	3.29E-02