co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G01050

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016118: carotenoid catabolic process	0.00E+00
2	GO:0017038: protein import	0.00E+00
3	GO:0015979: photosynthesis	3.29E-15
4	GO:0009768: photosynthesis, light harvesting in photosystem I	1.87E-12
5	GO:0018298: protein-chromophore linkage	1.26E-10
6	GO:0010196: nonphotochemical quenching	4.36E-09
7	GO:0010207: photosystem II assembly	7.68E-08
8	GO:0010205: photoinhibition	6.28E-06
9	GO:0009773: photosynthetic electron transport in photosystem I	9.33E-06
10	GO:0006094: gluconeogenesis	1.31E-05
11	GO:0019253: reductive pentose-phosphate cycle	1.53E-05
12	GO:0034337: RNA folding	1.57E-05
13	GO:0035304: regulation of protein dephosphorylation	4.12E-05
14	GO:0016124: xanthophyll catabolic process	4.12E-05
15	GO:0016121: carotene catabolic process	4.12E-05
16	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.12E-05
17	GO:0006000: fructose metabolic process	7.34E-05
18	GO:0015995: chlorophyll biosynthetic process	1.23E-04
19	GO:0010021: amylopectin biosynthetic process	1.53E-04
20	GO:0010109: regulation of photosynthesis	1.53E-04
21	GO:0016123: xanthophyll biosynthetic process	1.98E-04
22	GO:0009635: response to herbicide	2.47E-04
23	GO:0042549: photosystem II stabilization	2.47E-04
24	GO:0009644: response to high light intensity	2.50E-04
25	GO:1901259: chloroplast rRNA processing	2.97E-04
26	GO:0009769: photosynthesis, light harvesting in photosystem II	3.49E-04
27	GO:0009645: response to low light intensity stimulus	3.49E-04
28	GO:0006096: glycolytic process	3.70E-04
29	GO:0006605: protein targeting	4.04E-04
30	GO:0006002: fructose 6-phosphate metabolic process	4.60E-04
31	GO:0006098: pentose-phosphate shunt	5.18E-04
32	GO:0019684: photosynthesis, light reaction	7.00E-04
33	GO:0018119: peptidyl-cysteine S-nitrosylation	7.00E-04
34	GO:0006006: glucose metabolic process	8.30E-04
35	GO:0005986: sucrose biosynthetic process	8.30E-04
36	GO:0005985: sucrose metabolic process	9.64E-04
37	GO:0006636: unsaturated fatty acid biosynthetic process	1.03E-03
38	GO:0035428: hexose transmembrane transport	1.33E-03
39	GO:0009409: response to cold	1.40E-03
40	GO:0016117: carotenoid biosynthetic process	1.56E-03
41	GO:0046323: glucose import	1.73E-03
42	GO:0009646: response to absence of light	1.82E-03
43	GO:0019252: starch biosynthetic process	1.90E-03
44	GO:0010090: trichome morphogenesis	2.17E-03
45	GO:0010218: response to far red light	3.25E-03
46	GO:0010119: regulation of stomatal movement	3.36E-03
47	GO:0009416: response to light stimulus	3.57E-03
48	GO:0009637: response to blue light	3.58E-03
49	GO:0010114: response to red light	4.25E-03
50	GO:0009744: response to sucrose	4.25E-03
51	GO:0055114: oxidation-reduction process	5.94E-03
52	GO:0006633: fatty acid biosynthetic process	9.10E-03
53	GO:0007623: circadian rhythm	9.73E-03
54	GO:0046686: response to cadmium ion	1.12E-02
55	GO:0009658: chloroplast organization	1.32E-02
56	GO:0080167: response to karrikin	1.54E-02
57	GO:0009737: response to abscisic acid	1.54E-02
58	GO:0045454: cell redox homeostasis	1.75E-02
59	GO:0006886: intracellular protein transport	1.79E-02
60	GO:0008152: metabolic process	2.18E-02
61	GO:0009735: response to cytokinin	2.87E-02
62	GO:0009414: response to water deprivation	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0031409: pigment binding	1.01E-12
3	GO:0016168: chlorophyll binding	6.88E-11
4	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.57E-05
5	GO:0010242: oxygen evolving activity	1.57E-05
6	GO:0045485: omega-6 fatty acid desaturase activity	1.57E-05
7	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.12E-05
8	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.12E-05
9	GO:0008967: phosphoglycolate phosphatase activity	4.12E-05
10	GO:0010291: carotene beta-ring hydroxylase activity	4.12E-05
11	GO:0033201: alpha-1,4-glucan synthase activity	4.12E-05
12	GO:0004373: glycogen (starch) synthase activity	7.34E-05
13	GO:0015462: ATPase-coupled protein transmembrane transporter activity	7.34E-05
14	GO:0016851: magnesium chelatase activity	1.11E-04
15	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	1.11E-04
16	GO:0009011: starch synthase activity	1.53E-04
17	GO:0004040: amidase activity	1.98E-04
18	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	1.98E-04
19	GO:0004332: fructose-bisphosphate aldolase activity	2.47E-04
20	GO:0071949: FAD binding	5.18E-04
21	GO:0008266: poly(U) RNA binding	8.97E-04
22	GO:0005355: glucose transmembrane transporter activity	1.82E-03
23	GO:0046872: metal ion binding	2.21E-03
24	GO:0003746: translation elongation factor activity	3.58E-03
25	GO:0050661: NADP binding	3.91E-03
26	GO:0005198: structural molecule activity	4.60E-03
27	GO:0051287: NAD binding	4.84E-03
28	GO:0005509: calcium ion binding	6.63E-03
29	GO:0019843: rRNA binding	7.77E-03
30	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	7.91E-03
31	GO:0015144: carbohydrate transmembrane transporter activity	8.80E-03
32	GO:0016491: oxidoreductase activity	9.46E-03
33	GO:0005351: sugar:proton symporter activity	9.57E-03
34	GO:0003743: translation initiation factor activity	1.09E-02
35	GO:0020037: heme binding	1.14E-02
36	GO:0004497: monooxygenase activity	1.54E-02
37	GO:0005515: protein binding	1.96E-02
38	GO:0019825: oxygen binding	3.94E-02
39	GO:0005516: calmodulin binding	4.09E-02
40	GO:0005525: GTP binding	4.36E-02
41	GO:0005506: iron ion binding	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0009783: photosystem II antenna complex	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0009534: chloroplast thylakoid	4.68E-23
4	GO:0009507: chloroplast	8.00E-21
5	GO:0009535: chloroplast thylakoid membrane	3.13E-17
6	GO:0009941: chloroplast envelope	3.52E-15
7	GO:0009522: photosystem I	4.28E-14
8	GO:0009579: thylakoid	3.56E-13
9	GO:0010287: plastoglobule	3.76E-13
10	GO:0009570: chloroplast stroma	2.98E-11
11	GO:0030076: light-harvesting complex	3.08E-10
12	GO:0042651: thylakoid membrane	1.72E-07
13	GO:0031969: chloroplast membrane	3.98E-06
14	GO:0030095: chloroplast photosystem II	1.53E-05
15	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.57E-05
16	GO:0009543: chloroplast thylakoid lumen	2.43E-05
17	GO:0009654: photosystem II oxygen evolving complex	2.61E-05
18	GO:0030093: chloroplast photosystem I	4.12E-05
19	GO:0009523: photosystem II	6.25E-05
20	GO:0019898: extrinsic component of membrane	6.25E-05
21	GO:0010007: magnesium chelatase complex	7.34E-05
22	GO:0010319: stromule	9.01E-05
23	GO:0048046: apoplast	1.27E-04
24	GO:0009517: PSII associated light-harvesting complex II	1.53E-04
25	GO:0055035: plastid thylakoid membrane	1.98E-04
26	GO:0031977: thylakoid lumen	2.12E-04
27	GO:0009533: chloroplast stromal thylakoid	3.49E-04
28	GO:0016020: membrane	3.51E-04
29	GO:0009501: amyloplast	4.04E-04
30	GO:0009706: chloroplast inner membrane	4.44E-04
31	GO:0042644: chloroplast nucleoid	5.18E-04
32	GO:0032040: small-subunit processome	7.65E-04
33	GO:0009508: plastid chromosome	8.30E-04
34	GO:0009295: nucleoid	2.36E-03
35	GO:0016021: integral component of membrane	2.78E-02