GO Enrichment Analysis of Co-expressed Genes with
AT4G00560
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 2 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 3 | GO:0090042: tubulin deacetylation | 0.00E+00 |
| 4 | GO:0090279: regulation of calcium ion import | 0.00E+00 |
| 5 | GO:1905177: tracheary element differentiation | 0.00E+00 |
| 6 | GO:0071474: cellular hyperosmotic response | 0.00E+00 |
| 7 | GO:1905421: regulation of plant organ morphogenesis | 0.00E+00 |
| 8 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 9 | GO:0030155: regulation of cell adhesion | 0.00E+00 |
| 10 | GO:0032544: plastid translation | 3.07E-10 |
| 11 | GO:0006412: translation | 3.19E-08 |
| 12 | GO:0015979: photosynthesis | 7.06E-07 |
| 13 | GO:0042254: ribosome biogenesis | 2.98E-06 |
| 14 | GO:0009735: response to cytokinin | 1.09E-05 |
| 15 | GO:0009773: photosynthetic electron transport in photosystem I | 1.68E-05 |
| 16 | GO:0010027: thylakoid membrane organization | 2.35E-05 |
| 17 | GO:0015995: chlorophyll biosynthetic process | 3.26E-05 |
| 18 | GO:0061077: chaperone-mediated protein folding | 7.43E-05 |
| 19 | GO:0000476: maturation of 4.5S rRNA | 2.18E-04 |
| 20 | GO:0000967: rRNA 5'-end processing | 2.18E-04 |
| 21 | GO:0043007: maintenance of rDNA | 2.18E-04 |
| 22 | GO:0010028: xanthophyll cycle | 2.18E-04 |
| 23 | GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | 2.18E-04 |
| 24 | GO:0005980: glycogen catabolic process | 2.18E-04 |
| 25 | GO:0009658: chloroplast organization | 2.55E-04 |
| 26 | GO:0010206: photosystem II repair | 2.82E-04 |
| 27 | GO:0090342: regulation of cell aging | 4.86E-04 |
| 28 | GO:0016122: xanthophyll metabolic process | 4.86E-04 |
| 29 | GO:0006521: regulation of cellular amino acid metabolic process | 4.86E-04 |
| 30 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 4.86E-04 |
| 31 | GO:0051262: protein tetramerization | 4.86E-04 |
| 32 | GO:0034470: ncRNA processing | 4.86E-04 |
| 33 | GO:0010102: lateral root morphogenesis | 5.92E-04 |
| 34 | GO:0006518: peptide metabolic process | 7.90E-04 |
| 35 | GO:0010623: programmed cell death involved in cell development | 7.90E-04 |
| 36 | GO:0080055: low-affinity nitrate transport | 7.90E-04 |
| 37 | GO:0016050: vesicle organization | 7.90E-04 |
| 38 | GO:0048281: inflorescence morphogenesis | 7.90E-04 |
| 39 | GO:0006000: fructose metabolic process | 7.90E-04 |
| 40 | GO:0009409: response to cold | 1.11E-03 |
| 41 | GO:0010148: transpiration | 1.13E-03 |
| 42 | GO:0010306: rhamnogalacturonan II biosynthetic process | 1.13E-03 |
| 43 | GO:0010731: protein glutathionylation | 1.13E-03 |
| 44 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.13E-03 |
| 45 | GO:0010508: positive regulation of autophagy | 1.50E-03 |
| 46 | GO:0051205: protein insertion into membrane | 1.50E-03 |
| 47 | GO:0015846: polyamine transport | 1.50E-03 |
| 48 | GO:0006546: glycine catabolic process | 1.50E-03 |
| 49 | GO:0010021: amylopectin biosynthetic process | 1.50E-03 |
| 50 | GO:0006808: regulation of nitrogen utilization | 1.50E-03 |
| 51 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.50E-03 |
| 52 | GO:0006109: regulation of carbohydrate metabolic process | 1.50E-03 |
| 53 | GO:0015994: chlorophyll metabolic process | 1.50E-03 |
| 54 | GO:0000304: response to singlet oxygen | 1.91E-03 |
| 55 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.91E-03 |
| 56 | GO:0006461: protein complex assembly | 1.91E-03 |
| 57 | GO:0010190: cytochrome b6f complex assembly | 2.35E-03 |
| 58 | GO:0042549: photosystem II stabilization | 2.35E-03 |
| 59 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.35E-03 |
| 60 | GO:0000470: maturation of LSU-rRNA | 2.35E-03 |
| 61 | GO:0030163: protein catabolic process | 2.50E-03 |
| 62 | GO:0042026: protein refolding | 2.83E-03 |
| 63 | GO:1901259: chloroplast rRNA processing | 2.83E-03 |
| 64 | GO:0006458: 'de novo' protein folding | 2.83E-03 |
| 65 | GO:0009955: adaxial/abaxial pattern specification | 2.83E-03 |
| 66 | GO:0070370: cellular heat acclimation | 3.33E-03 |
| 67 | GO:0010103: stomatal complex morphogenesis | 3.33E-03 |
| 68 | GO:0010196: nonphotochemical quenching | 3.33E-03 |
| 69 | GO:0005978: glycogen biosynthetic process | 3.86E-03 |
| 70 | GO:0008152: metabolic process | 4.06E-03 |
| 71 | GO:0009657: plastid organization | 4.42E-03 |
| 72 | GO:0001558: regulation of cell growth | 4.42E-03 |
| 73 | GO:0006002: fructose 6-phosphate metabolic process | 4.42E-03 |
| 74 | GO:0006783: heme biosynthetic process | 5.00E-03 |
| 75 | GO:0042761: very long-chain fatty acid biosynthetic process | 5.62E-03 |
| 76 | GO:0005982: starch metabolic process | 5.62E-03 |
| 77 | GO:0006631: fatty acid metabolic process | 6.20E-03 |
| 78 | GO:0006782: protoporphyrinogen IX biosynthetic process | 6.25E-03 |
| 79 | GO:0048829: root cap development | 6.25E-03 |
| 80 | GO:0006415: translational termination | 6.91E-03 |
| 81 | GO:0019684: photosynthesis, light reaction | 6.91E-03 |
| 82 | GO:0009089: lysine biosynthetic process via diaminopimelate | 6.91E-03 |
| 83 | GO:0043085: positive regulation of catalytic activity | 6.91E-03 |
| 84 | GO:0010015: root morphogenesis | 6.91E-03 |
| 85 | GO:0042742: defense response to bacterium | 7.21E-03 |
| 86 | GO:0010628: positive regulation of gene expression | 8.30E-03 |
| 87 | GO:0006094: gluconeogenesis | 8.30E-03 |
| 88 | GO:0005986: sucrose biosynthetic process | 8.30E-03 |
| 89 | GO:0010020: chloroplast fission | 9.03E-03 |
| 90 | GO:0019253: reductive pentose-phosphate cycle | 9.03E-03 |
| 91 | GO:0010207: photosystem II assembly | 9.03E-03 |
| 92 | GO:0009266: response to temperature stimulus | 9.03E-03 |
| 93 | GO:0005985: sucrose metabolic process | 9.79E-03 |
| 94 | GO:0010025: wax biosynthetic process | 1.06E-02 |
| 95 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.14E-02 |
| 96 | GO:0006289: nucleotide-excision repair | 1.14E-02 |
| 97 | GO:0000027: ribosomal large subunit assembly | 1.14E-02 |
| 98 | GO:0045454: cell redox homeostasis | 1.18E-02 |
| 99 | GO:0007017: microtubule-based process | 1.22E-02 |
| 100 | GO:0051302: regulation of cell division | 1.22E-02 |
| 101 | GO:0016575: histone deacetylation | 1.22E-02 |
| 102 | GO:0006418: tRNA aminoacylation for protein translation | 1.22E-02 |
| 103 | GO:0031408: oxylipin biosynthetic process | 1.30E-02 |
| 104 | GO:0003333: amino acid transmembrane transport | 1.30E-02 |
| 105 | GO:0019915: lipid storage | 1.30E-02 |
| 106 | GO:0019748: secondary metabolic process | 1.39E-02 |
| 107 | GO:0009686: gibberellin biosynthetic process | 1.48E-02 |
| 108 | GO:0001944: vasculature development | 1.48E-02 |
| 109 | GO:0006629: lipid metabolic process | 1.54E-02 |
| 110 | GO:0010089: xylem development | 1.57E-02 |
| 111 | GO:0000413: protein peptidyl-prolyl isomerization | 1.75E-02 |
| 112 | GO:0006508: proteolysis | 1.84E-02 |
| 113 | GO:0006662: glycerol ether metabolic process | 1.85E-02 |
| 114 | GO:0048868: pollen tube development | 1.85E-02 |
| 115 | GO:0009790: embryo development | 1.90E-02 |
| 116 | GO:0019252: starch biosynthetic process | 2.05E-02 |
| 117 | GO:0071281: cellular response to iron ion | 2.36E-02 |
| 118 | GO:1901657: glycosyl compound metabolic process | 2.36E-02 |
| 119 | GO:0009607: response to biotic stimulus | 2.91E-02 |
| 120 | GO:0009627: systemic acquired resistance | 3.02E-02 |
| 121 | GO:0055114: oxidation-reduction process | 3.10E-02 |
| 122 | GO:0009817: defense response to fungus, incompatible interaction | 3.37E-02 |
| 123 | GO:0009813: flavonoid biosynthetic process | 3.49E-02 |
| 124 | GO:0006499: N-terminal protein myristoylation | 3.62E-02 |
| 125 | GO:0009834: plant-type secondary cell wall biogenesis | 3.62E-02 |
| 126 | GO:0034599: cellular response to oxidative stress | 4.12E-02 |
| 127 | GO:0006810: transport | 4.22E-02 |
| 128 | GO:0080167: response to karrikin | 4.30E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051721: protein phosphatase 2A binding | 0.00E+00 |
| 2 | GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity | 0.00E+00 |
| 3 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 4 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 5 | GO:0042903: tubulin deacetylase activity | 0.00E+00 |
| 6 | GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity | 0.00E+00 |
| 7 | GO:0043014: alpha-tubulin binding | 0.00E+00 |
| 8 | GO:0009899: ent-kaurene synthase activity | 0.00E+00 |
| 9 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 10 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 11 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 12 | GO:0019843: rRNA binding | 2.99E-13 |
| 13 | GO:0003735: structural constituent of ribosome | 2.77E-10 |
| 14 | GO:0005528: FK506 binding | 2.27E-08 |
| 15 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.19E-07 |
| 16 | GO:0004853: uroporphyrinogen decarboxylase activity | 2.18E-04 |
| 17 | GO:0004645: phosphorylase activity | 2.18E-04 |
| 18 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 2.18E-04 |
| 19 | GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | 2.18E-04 |
| 20 | GO:0005227: calcium activated cation channel activity | 2.18E-04 |
| 21 | GO:0008184: glycogen phosphorylase activity | 2.18E-04 |
| 22 | GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity | 2.18E-04 |
| 23 | GO:0044183: protein binding involved in protein folding | 4.56E-04 |
| 24 | GO:0008967: phosphoglycolate phosphatase activity | 4.86E-04 |
| 25 | GO:0018708: thiol S-methyltransferase activity | 4.86E-04 |
| 26 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 4.86E-04 |
| 27 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 4.86E-04 |
| 28 | GO:0016868: intramolecular transferase activity, phosphotransferases | 4.86E-04 |
| 29 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 4.86E-04 |
| 30 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 4.86E-04 |
| 31 | GO:0005504: fatty acid binding | 7.90E-04 |
| 32 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 7.90E-04 |
| 33 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 7.90E-04 |
| 34 | GO:0080054: low-affinity nitrate transmembrane transporter activity | 7.90E-04 |
| 35 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 7.90E-04 |
| 36 | GO:0043169: cation binding | 7.90E-04 |
| 37 | GO:0017150: tRNA dihydrouridine synthase activity | 7.90E-04 |
| 38 | GO:0015203: polyamine transmembrane transporter activity | 1.13E-03 |
| 39 | GO:0016851: magnesium chelatase activity | 1.13E-03 |
| 40 | GO:0048487: beta-tubulin binding | 1.13E-03 |
| 41 | GO:0016149: translation release factor activity, codon specific | 1.13E-03 |
| 42 | GO:0043023: ribosomal large subunit binding | 1.13E-03 |
| 43 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 1.13E-03 |
| 44 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.13E-03 |
| 45 | GO:0019199: transmembrane receptor protein kinase activity | 1.50E-03 |
| 46 | GO:0045430: chalcone isomerase activity | 1.50E-03 |
| 47 | GO:0042277: peptide binding | 1.50E-03 |
| 48 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.50E-03 |
| 49 | GO:0048038: quinone binding | 2.20E-03 |
| 50 | GO:0005261: cation channel activity | 2.83E-03 |
| 51 | GO:0051920: peroxiredoxin activity | 2.83E-03 |
| 52 | GO:0004252: serine-type endopeptidase activity | 3.11E-03 |
| 53 | GO:0016491: oxidoreductase activity | 3.55E-03 |
| 54 | GO:0004033: aldo-keto reductase (NADP) activity | 3.86E-03 |
| 55 | GO:0016209: antioxidant activity | 3.86E-03 |
| 56 | GO:0008236: serine-type peptidase activity | 3.92E-03 |
| 57 | GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific) | 4.42E-03 |
| 58 | GO:0003747: translation release factor activity | 5.00E-03 |
| 59 | GO:0047617: acyl-CoA hydrolase activity | 5.62E-03 |
| 60 | GO:0015174: basic amino acid transmembrane transporter activity | 5.62E-03 |
| 61 | GO:0008047: enzyme activator activity | 6.25E-03 |
| 62 | GO:0047372: acylglycerol lipase activity | 6.91E-03 |
| 63 | GO:0051537: 2 iron, 2 sulfur cluster binding | 7.28E-03 |
| 64 | GO:0043621: protein self-association | 7.28E-03 |
| 65 | GO:0004565: beta-galactosidase activity | 8.30E-03 |
| 66 | GO:0004190: aspartic-type endopeptidase activity | 9.79E-03 |
| 67 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.11E-02 |
| 68 | GO:0004857: enzyme inhibitor activity | 1.14E-02 |
| 69 | GO:0004407: histone deacetylase activity | 1.14E-02 |
| 70 | GO:0030570: pectate lyase activity | 1.48E-02 |
| 71 | GO:0003924: GTPase activity | 1.54E-02 |
| 72 | GO:0047134: protein-disulfide reductase activity | 1.66E-02 |
| 73 | GO:0004812: aminoacyl-tRNA ligase activity | 1.66E-02 |
| 74 | GO:0004791: thioredoxin-disulfide reductase activity | 1.95E-02 |
| 75 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.36E-02 |
| 76 | GO:0005200: structural constituent of cytoskeleton | 2.57E-02 |
| 77 | GO:0016597: amino acid binding | 2.68E-02 |
| 78 | GO:0102483: scopolin beta-glucosidase activity | 3.14E-02 |
| 79 | GO:0008168: methyltransferase activity | 3.34E-02 |
| 80 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.37E-02 |
| 81 | GO:0004222: metalloendopeptidase activity | 3.62E-02 |
| 82 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 3.99E-02 |
| 83 | GO:0008422: beta-glucosidase activity | 4.25E-02 |
| 84 | GO:0004364: glutathione transferase activity | 4.65E-02 |
| 85 | GO:0004185: serine-type carboxypeptidase activity | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 3 | GO:0009507: chloroplast | 2.34E-55 |
| 4 | GO:0009570: chloroplast stroma | 2.78E-43 |
| 5 | GO:0009534: chloroplast thylakoid | 1.78E-34 |
| 6 | GO:0009941: chloroplast envelope | 2.87E-25 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 1.37E-23 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 4.02E-18 |
| 9 | GO:0009579: thylakoid | 8.57E-17 |
| 10 | GO:0031977: thylakoid lumen | 1.12E-15 |
| 11 | GO:0005840: ribosome | 3.50E-11 |
| 12 | GO:0030095: chloroplast photosystem II | 6.63E-07 |
| 13 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 7.27E-06 |
| 14 | GO:0010287: plastoglobule | 4.65E-05 |
| 15 | GO:0009533: chloroplast stromal thylakoid | 1.47E-04 |
| 16 | GO:0009538: photosystem I reaction center | 1.88E-04 |
| 17 | GO:0009536: plastid | 2.41E-04 |
| 18 | GO:0010319: stromule | 2.97E-04 |
| 19 | GO:0010007: magnesium chelatase complex | 7.90E-04 |
| 20 | GO:0042651: thylakoid membrane | 1.01E-03 |
| 21 | GO:0009654: photosystem II oxygen evolving complex | 1.01E-03 |
| 22 | GO:0015935: small ribosomal subunit | 1.10E-03 |
| 23 | GO:0005960: glycine cleavage complex | 1.13E-03 |
| 24 | GO:0019898: extrinsic component of membrane | 2.06E-03 |
| 25 | GO:0009295: nucleoid | 2.82E-03 |
| 26 | GO:0009840: chloroplastic endopeptidase Clp complex | 2.83E-03 |
| 27 | GO:0009501: amyloplast | 3.86E-03 |
| 28 | GO:0015934: large ribosomal subunit | 4.76E-03 |
| 29 | GO:0045298: tubulin complex | 5.00E-03 |
| 30 | GO:0005763: mitochondrial small ribosomal subunit | 5.00E-03 |
| 31 | GO:0009508: plastid chromosome | 8.30E-03 |
| 32 | GO:0043234: protein complex | 1.06E-02 |
| 33 | GO:0009532: plastid stroma | 1.30E-02 |
| 34 | GO:0009706: chloroplast inner membrane | 1.30E-02 |
| 35 | GO:0009523: photosystem II | 2.05E-02 |
| 36 | GO:0016020: membrane | 2.44E-02 |
| 37 | GO:0048046: apoplast | 2.52E-02 |
| 38 | GO:0031969: chloroplast membrane | 4.30E-02 |
| 39 | GO:0022625: cytosolic large ribosomal subunit | 4.52E-02 |