co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G00050

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
2	GO:0010243: response to organonitrogen compound	0.00E+00
3	GO:0007623: circadian rhythm	7.29E-08
4	GO:0042754: negative regulation of circadian rhythm	2.58E-07
5	GO:0010100: negative regulation of photomorphogenesis	3.00E-07
6	GO:0071483: cellular response to blue light	4.57E-06
7	GO:0010236: plastoquinone biosynthetic process	7.69E-06
8	GO:0009909: regulation of flower development	9.65E-06
9	GO:0048574: long-day photoperiodism, flowering	3.92E-05
10	GO:0043100: pyrimidine nucleobase salvage	1.62E-04
11	GO:1902066: regulation of cell wall pectin metabolic process	1.62E-04
12	GO:0051511: negative regulation of unidimensional cell growth	1.62E-04
13	GO:0006898: receptor-mediated endocytosis	1.62E-04
14	GO:0043496: regulation of protein homodimerization activity	1.62E-04
15	GO:0007154: cell communication	1.62E-04
16	GO:0008299: isoprenoid biosynthetic process	2.09E-04
17	GO:0016570: histone modification	2.75E-04
18	GO:0019419: sulfate reduction	2.75E-04
19	GO:0071230: cellular response to amino acid stimulus	2.75E-04
20	GO:0044375: regulation of peroxisome size	2.75E-04
21	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	3.98E-04
22	GO:0010600: regulation of auxin biosynthetic process	5.32E-04
23	GO:0009902: chloroplast relocation	5.32E-04
24	GO:0010021: amylopectin biosynthetic process	5.32E-04
25	GO:0009739: response to gibberellin	6.30E-04
26	GO:0009904: chloroplast accumulation movement	6.73E-04
27	GO:0009903: chloroplast avoidance movement	9.79E-04
28	GO:0009723: response to ethylene	1.12E-03
29	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.14E-03
30	GO:0006368: transcription elongation from RNA polymerase II promoter	1.14E-03
31	GO:0070370: cellular heat acclimation	1.14E-03
32	GO:0031540: regulation of anthocyanin biosynthetic process	1.32E-03
33	GO:0009231: riboflavin biosynthetic process	1.32E-03
34	GO:0016559: peroxisome fission	1.32E-03
35	GO:0030091: protein repair	1.32E-03
36	GO:0009640: photomorphogenesis	1.38E-03
37	GO:0009737: response to abscisic acid	1.57E-03
38	GO:0034765: regulation of ion transmembrane transport	1.69E-03
39	GO:0009585: red, far-red light phototransduction	1.85E-03
40	GO:0009751: response to salicylic acid	1.96E-03
41	GO:0051555: flavonol biosynthetic process	2.10E-03
42	GO:0000103: sulfate assimilation	2.10E-03
43	GO:0009753: response to jasmonic acid	2.18E-03
44	GO:0006816: calcium ion transport	2.31E-03
45	GO:0000272: polysaccharide catabolic process	2.31E-03
46	GO:0009785: blue light signaling pathway	2.76E-03
47	GO:0007015: actin filament organization	2.99E-03
48	GO:0007031: peroxisome organization	3.23E-03
49	GO:0019344: cysteine biosynthetic process	3.73E-03
50	GO:0051017: actin filament bundle assembly	3.73E-03
51	GO:0006874: cellular calcium ion homeostasis	3.99E-03
52	GO:0009416: response to light stimulus	4.12E-03
53	GO:0010017: red or far-red light signaling pathway	4.53E-03
54	GO:0040007: growth	4.81E-03
55	GO:0042631: cellular response to water deprivation	5.68E-03
56	GO:0042391: regulation of membrane potential	5.68E-03
57	GO:0010182: sugar mediated signaling pathway	5.98E-03
58	GO:0009741: response to brassinosteroid	5.98E-03
59	GO:0042752: regulation of circadian rhythm	6.28E-03
60	GO:0009851: auxin biosynthetic process	6.60E-03
61	GO:0019252: starch biosynthetic process	6.60E-03
62	GO:0009658: chloroplast organization	6.91E-03
63	GO:0009630: gravitropism	7.24E-03
64	GO:0006464: cellular protein modification process	7.90E-03
65	GO:0071805: potassium ion transmembrane transport	8.24E-03
66	GO:0080167: response to karrikin	8.57E-03
67	GO:0016126: sterol biosynthetic process	8.93E-03
68	GO:0042128: nitrate assimilation	9.65E-03
69	GO:0015979: photosynthesis	9.79E-03
70	GO:0015995: chlorophyll biosynthetic process	1.00E-02
71	GO:0006355: regulation of transcription, DNA-templated	1.01E-02
72	GO:0045454: cell redox homeostasis	1.03E-02
73	GO:0045892: negative regulation of transcription, DNA-templated	1.04E-02
74	GO:0018298: protein-chromophore linkage	1.08E-02
75	GO:0009813: flavonoid biosynthetic process	1.11E-02
76	GO:0006811: ion transport	1.15E-02
77	GO:0009733: response to auxin	1.17E-02
78	GO:0009637: response to blue light	1.27E-02
79	GO:0045087: innate immune response	1.27E-02
80	GO:0009651: response to salt stress	1.31E-02
81	GO:0046686: response to cadmium ion	1.77E-02
82	GO:0042538: hyperosmotic salinity response	1.79E-02
83	GO:0006351: transcription, DNA-templated	1.80E-02
84	GO:0010224: response to UV-B	1.93E-02
85	GO:0006857: oligopeptide transport	1.97E-02
86	GO:0035556: intracellular signal transduction	2.38E-02
87	GO:0009624: response to nematode	2.42E-02
88	GO:0045893: positive regulation of transcription, DNA-templated	2.59E-02
89	GO:0045490: pectin catabolic process	3.57E-02
90	GO:0010228: vegetative to reproductive phase transition of meristem	3.68E-02
91	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.86E-02
92	GO:0010468: regulation of gene expression	4.04E-02

Rank	GO Term	Adjusted P value
1	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
2	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
3	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
4	GO:0050347: trans-octaprenyltranstransferase activity	2.58E-07
5	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	2.58E-07
6	GO:0000989: transcription factor activity, transcription factor binding	4.28E-07
7	GO:0008106: alcohol dehydrogenase (NADP+) activity	2.38E-06
8	GO:0042802: identical protein binding	4.22E-06
9	GO:0004328: formamidase activity	6.74E-05
10	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	6.74E-05
11	GO:0008066: glutamate receptor activity	6.74E-05
12	GO:0019904: protein domain specific binding	8.50E-05
13	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	1.62E-04
14	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	1.62E-04
15	GO:0033201: alpha-1,4-glucan synthase activity	1.62E-04
16	GO:0009973: adenylyl-sulfate reductase activity	1.62E-04
17	GO:1990269: RNA polymerase II C-terminal domain phosphoserine binding	1.62E-04
18	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	1.62E-04
19	GO:0001076: transcription factor activity, RNA polymerase II transcription factor binding	2.75E-04
20	GO:0004180: carboxypeptidase activity	2.75E-04
21	GO:0004373: glycogen (starch) synthase activity	2.75E-04
22	GO:0003913: DNA photolyase activity	2.75E-04
23	GO:0003935: GTP cyclohydrolase II activity	2.75E-04
24	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	3.98E-04
25	GO:0004506: squalene monooxygenase activity	5.32E-04
26	GO:0009011: starch synthase activity	5.32E-04
27	GO:0045431: flavonol synthase activity	6.73E-04
28	GO:0004866: endopeptidase inhibitor activity	8.23E-04
29	GO:0004709: MAP kinase kinase kinase activity	8.23E-04
30	GO:0008270: zinc ion binding	8.69E-04
31	GO:0005242: inward rectifier potassium channel activity	9.79E-04
32	GO:0016161: beta-amylase activity	9.79E-04
33	GO:0009881: photoreceptor activity	1.14E-03
34	GO:0030674: protein binding, bridging	1.32E-03
35	GO:0004871: signal transducer activity	1.62E-03
36	GO:0005262: calcium channel activity	2.76E-03
37	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.89E-03
38	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.99E-03
39	GO:0005217: intracellular ligand-gated ion channel activity	3.23E-03
40	GO:0004970: ionotropic glutamate receptor activity	3.23E-03
41	GO:0030570: pectate lyase activity	4.81E-03
42	GO:0005249: voltage-gated potassium channel activity	5.68E-03
43	GO:0030551: cyclic nucleotide binding	5.68E-03
44	GO:0004527: exonuclease activity	5.98E-03
45	GO:0010181: FMN binding	6.28E-03
46	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	7.57E-03
47	GO:0016791: phosphatase activity	7.90E-03
48	GO:0030247: polysaccharide binding	1.00E-02
49	GO:0004721: phosphoprotein phosphatase activity	1.00E-02
50	GO:0005515: protein binding	1.02E-02
51	GO:0008236: serine-type peptidase activity	1.04E-02
52	GO:0030145: manganese ion binding	1.19E-02
53	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.27E-02
54	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.35E-02
55	GO:0016491: oxidoreductase activity	1.43E-02
56	GO:0004672: protein kinase activity	1.64E-02
57	GO:0015293: symporter activity	1.65E-02
58	GO:0016298: lipase activity	1.93E-02
59	GO:0015035: protein disulfide oxidoreductase activity	2.47E-02
60	GO:0046872: metal ion binding	3.75E-02
61	GO:0016788: hydrolase activity, acting on ester bonds	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0031313: extrinsic component of endosome membrane	0.00E+00
2	GO:0031234: extrinsic component of cytoplasmic side of plasma membrane	6.74E-05
3	GO:0016593: Cdc73/Paf1 complex	5.32E-04
4	GO:0009526: plastid envelope	5.32E-04
5	GO:0005777: peroxisome	8.91E-04
6	GO:0009501: amyloplast	1.32E-03
7	GO:0031982: vesicle	1.32E-03
8	GO:0005779: integral component of peroxisomal membrane	1.50E-03
9	GO:0005884: actin filament	2.31E-03
10	GO:0005834: heterotrimeric G-protein complex	2.32E-03
11	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	7.58E-03
12	GO:0005778: peroxisomal membrane	8.24E-03
13	GO:0031969: chloroplast membrane	8.57E-03
14	GO:0009543: chloroplast thylakoid lumen	2.84E-02
15	GO:0046658: anchored component of plasma membrane	4.35E-02