Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G63520

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000505: regulation of energy homeostasis0.00E+00
2GO:0017038: protein import0.00E+00
3GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
4GO:0061635: regulation of protein complex stability0.00E+00
5GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
6GO:0005996: monosaccharide metabolic process0.00E+00
7GO:0015717: triose phosphate transport0.00E+00
8GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
9GO:0018023: peptidyl-lysine trimethylation0.00E+00
10GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
11GO:0034337: RNA folding0.00E+00
12GO:0015979: photosynthesis1.45E-34
13GO:0009768: photosynthesis, light harvesting in photosystem I2.09E-20
14GO:0018298: protein-chromophore linkage3.81E-18
15GO:0009645: response to low light intensity stimulus4.07E-13
16GO:0009773: photosynthetic electron transport in photosystem I3.68E-11
17GO:0010196: nonphotochemical quenching1.25E-10
18GO:0010207: photosystem II assembly1.58E-10
19GO:0009644: response to high light intensity6.93E-10
20GO:0010027: thylakoid membrane organization9.47E-10
21GO:0042549: photosystem II stabilization5.83E-09
22GO:0010114: response to red light1.68E-08
23GO:0006000: fructose metabolic process1.87E-08
24GO:0009769: photosynthesis, light harvesting in photosystem II2.55E-08
25GO:0009409: response to cold7.57E-08
26GO:0010218: response to far red light1.36E-07
27GO:0006094: gluconeogenesis7.77E-07
28GO:0035304: regulation of protein dephosphorylation2.91E-06
29GO:0030388: fructose 1,6-bisphosphate metabolic process2.91E-06
30GO:0009637: response to blue light5.51E-06
31GO:0006002: fructose 6-phosphate metabolic process7.32E-06
32GO:0032544: plastid translation7.32E-06
33GO:0010206: photosystem II repair1.02E-05
34GO:0010205: photoinhibition1.38E-05
35GO:0019684: photosynthesis, light reaction2.33E-05
36GO:0009416: response to light stimulus2.94E-05
37GO:0009765: photosynthesis, light harvesting4.33E-05
38GO:0010021: amylopectin biosynthetic process4.33E-05
39GO:0016123: xanthophyll biosynthetic process6.89E-05
40GO:0009269: response to desiccation1.00E-04
41GO:0009735: response to cytokinin1.38E-04
42GO:1901259: chloroplast rRNA processing1.39E-04
43GO:0009772: photosynthetic electron transport in photosystem II1.82E-04
44GO:0005978: glycogen biosynthetic process2.32E-04
45GO:0009642: response to light intensity2.32E-04
46GO:0042742: defense response to bacterium2.41E-04
47GO:0043953: protein transport by the Tat complex2.51E-04
48GO:0000481: maturation of 5S rRNA2.51E-04
49GO:0051775: response to redox state2.51E-04
50GO:0019252: starch biosynthetic process2.51E-04
51GO:0065002: intracellular protein transmembrane transport2.51E-04
52GO:0080093: regulation of photorespiration2.51E-04
53GO:0043609: regulation of carbon utilization2.51E-04
54GO:0043007: maintenance of rDNA2.51E-04
55GO:0031998: regulation of fatty acid beta-oxidation2.51E-04
56GO:1902458: positive regulation of stomatal opening2.51E-04
57GO:0006098: pentose-phosphate shunt3.46E-04
58GO:0016560: protein import into peroxisome matrix, docking5.53E-04
59GO:0019388: galactose catabolic process5.53E-04
60GO:0018026: peptidyl-lysine monomethylation5.53E-04
61GO:0015995: chlorophyll biosynthetic process5.53E-04
62GO:0097054: L-glutamate biosynthetic process5.53E-04
63GO:0006729: tetrahydrobiopterin biosynthetic process5.53E-04
64GO:1903426: regulation of reactive oxygen species biosynthetic process5.53E-04
65GO:0043085: positive regulation of catalytic activity5.54E-04
66GO:0018119: peptidyl-cysteine S-nitrosylation5.54E-04
67GO:0005983: starch catabolic process6.33E-04
68GO:0045037: protein import into chloroplast stroma6.33E-04
69GO:0006108: malate metabolic process7.18E-04
70GO:0006006: glucose metabolic process7.18E-04
71GO:0005986: sucrose biosynthetic process7.18E-04
72GO:0019253: reductive pentose-phosphate cycle8.08E-04
73GO:1902448: positive regulation of shade avoidance8.99E-04
74GO:0090391: granum assembly8.99E-04
75GO:0035436: triose phosphate transmembrane transport8.99E-04
76GO:0016050: vesicle organization8.99E-04
77GO:0006107: oxaloacetate metabolic process1.28E-03
78GO:0006537: glutamate biosynthetic process1.28E-03
79GO:0009590: detection of gravity1.28E-03
80GO:0006515: misfolded or incompletely synthesized protein catabolic process1.28E-03
81GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.28E-03
82GO:0071484: cellular response to light intensity1.28E-03
83GO:0019464: glycine decarboxylation via glycine cleavage system1.71E-03
84GO:0006109: regulation of carbohydrate metabolic process1.71E-03
85GO:0030104: water homeostasis1.71E-03
86GO:0045727: positive regulation of translation1.71E-03
87GO:0015994: chlorophyll metabolic process1.71E-03
88GO:0006546: glycine catabolic process1.71E-03
89GO:0010600: regulation of auxin biosynthetic process1.71E-03
90GO:0006021: inositol biosynthetic process1.71E-03
91GO:0006552: leucine catabolic process1.71E-03
92GO:0006734: NADH metabolic process1.71E-03
93GO:0015713: phosphoglycerate transport1.71E-03
94GO:0010109: regulation of photosynthesis1.71E-03
95GO:0019676: ammonia assimilation cycle1.71E-03
96GO:0015976: carbon utilization1.71E-03
97GO:0016117: carotenoid biosynthetic process1.87E-03
98GO:0009658: chloroplast organization1.90E-03
99GO:0006096: glycolytic process2.09E-03
100GO:0006662: glycerol ether metabolic process2.18E-03
101GO:0010182: sugar mediated signaling pathway2.18E-03
102GO:0016120: carotene biosynthetic process2.19E-03
103GO:0010236: plastoquinone biosynthetic process2.19E-03
104GO:0045038: protein import into chloroplast thylakoid membrane2.19E-03
105GO:0006097: glyoxylate cycle2.19E-03
106GO:0006814: sodium ion transport2.34E-03
107GO:0009646: response to absence of light2.34E-03
108GO:0080167: response to karrikin2.63E-03
109GO:0010190: cytochrome b6f complex assembly2.70E-03
110GO:0009635: response to herbicide2.70E-03
111GO:0009643: photosynthetic acclimation2.70E-03
112GO:0050665: hydrogen peroxide biosynthetic process2.70E-03
113GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.70E-03
114GO:0009955: adaxial/abaxial pattern specification3.24E-03
115GO:0010244: response to low fluence blue light stimulus by blue low-fluence system3.24E-03
116GO:0010189: vitamin E biosynthetic process3.24E-03
117GO:0009854: oxidative photosynthetic carbon pathway3.24E-03
118GO:0045454: cell redox homeostasis3.46E-03
119GO:0071446: cellular response to salicylic acid stimulus3.82E-03
120GO:0022904: respiratory electron transport chain3.82E-03
121GO:0010928: regulation of auxin mediated signaling pathway4.44E-03
122GO:0006605: protein targeting4.44E-03
123GO:0032508: DNA duplex unwinding4.44E-03
124GO:2000070: regulation of response to water deprivation4.44E-03
125GO:0016311: dephosphorylation4.79E-03
126GO:0015996: chlorophyll catabolic process5.08E-03
127GO:0007186: G-protein coupled receptor signaling pathway5.08E-03
128GO:0017004: cytochrome complex assembly5.08E-03
129GO:2000031: regulation of salicylic acid mediated signaling pathway5.08E-03
130GO:0090333: regulation of stomatal closure5.75E-03
131GO:0006754: ATP biosynthetic process5.75E-03
132GO:0005982: starch metabolic process6.46E-03
133GO:0034599: cellular response to oxidative stress6.68E-03
134GO:0006099: tricarboxylic acid cycle6.68E-03
135GO:0009688: abscisic acid biosynthetic process7.20E-03
136GO:0048829: root cap development7.20E-03
137GO:0055114: oxidation-reduction process7.78E-03
138GO:0009698: phenylpropanoid metabolic process7.96E-03
139GO:0009073: aromatic amino acid family biosynthetic process7.96E-03
140GO:0000272: polysaccharide catabolic process7.96E-03
141GO:0006415: translational termination7.96E-03
142GO:0009750: response to fructose7.96E-03
143GO:0016485: protein processing7.96E-03
144GO:0009744: response to sucrose8.24E-03
145GO:0042254: ribosome biogenesis9.47E-03
146GO:0010628: positive regulation of gene expression9.57E-03
147GO:0009767: photosynthetic electron transport chain9.57E-03
148GO:0006302: double-strand break repair1.04E-02
149GO:0005985: sucrose metabolic process1.13E-02
150GO:0090351: seedling development1.13E-02
151GO:0006636: unsaturated fatty acid biosynthetic process1.22E-02
152GO:0061077: chaperone-mediated protein folding1.50E-02
153GO:0051321: meiotic cell cycle1.50E-02
154GO:0048511: rhythmic process1.50E-02
155GO:0035428: hexose transmembrane transport1.60E-02
156GO:0009693: ethylene biosynthetic process1.71E-02
157GO:0071215: cellular response to abscisic acid stimulus1.71E-02
158GO:0040007: growth1.71E-02
159GO:0009561: megagametogenesis1.81E-02
160GO:0006810: transport1.99E-02
161GO:0042631: cellular response to water deprivation2.02E-02
162GO:0005975: carbohydrate metabolic process2.10E-02
163GO:0046323: glucose import2.14E-02
164GO:0046686: response to cadmium ion2.20E-02
165GO:0015986: ATP synthesis coupled proton transport2.25E-02
166GO:0009791: post-embryonic development2.36E-02
167GO:0008654: phospholipid biosynthetic process2.36E-02
168GO:0071554: cell wall organization or biogenesis2.48E-02
169GO:0010090: trichome morphogenesis2.72E-02
170GO:0007623: circadian rhythm2.75E-02
171GO:0009567: double fertilization forming a zygote and endosperm2.85E-02
172GO:0051607: defense response to virus3.10E-02
173GO:0048573: photoperiodism, flowering3.62E-02
174GO:0009737: response to abscisic acid3.70E-02
175GO:0006499: N-terminal protein myristoylation4.18E-02
176GO:0009834: plant-type secondary cell wall biogenesis4.18E-02
177GO:0048527: lateral root development4.32E-02
178GO:0010119: regulation of stomatal movement4.32E-02
179GO:0009853: photorespiration4.61E-02
RankGO TermAdjusted P value
1GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
2GO:0004174: electron-transferring-flavoprotein dehydrogenase activity0.00E+00
3GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
4GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity0.00E+00
5GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
6GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
7GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
8GO:0048039: ubiquinone binding0.00E+00
9GO:0010242: oxygen evolving activity0.00E+00
10GO:0016166: phytoene dehydrogenase activity0.00E+00
11GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
12GO:0046408: chlorophyll synthetase activity0.00E+00
13GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor0.00E+00
14GO:0051738: xanthophyll binding0.00E+00
15GO:0009540: zeaxanthin epoxidase [overall] activity0.00E+00
16GO:0031409: pigment binding4.59E-21
17GO:0016168: chlorophyll binding9.02E-19
18GO:0008266: poly(U) RNA binding1.04E-06
19GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity2.91E-06
20GO:0019843: rRNA binding6.92E-06
21GO:0016851: magnesium chelatase activity2.38E-05
22GO:0004332: fructose-bisphosphate aldolase activity1.01E-04
23GO:0016615: malate dehydrogenase activity1.01E-04
24GO:0030060: L-malate dehydrogenase activity1.39E-04
25GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity2.51E-04
26GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.51E-04
27GO:0045485: omega-6 fatty acid desaturase activity2.51E-04
28GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.51E-04
29GO:0008746: NAD(P)+ transhydrogenase activity2.51E-04
30GO:0016041: glutamate synthase (ferredoxin) activity2.51E-04
31GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.51E-04
32GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.51E-04
33GO:0071949: FAD binding3.46E-04
34GO:0008047: enzyme activator activity4.80E-04
35GO:0033201: alpha-1,4-glucan synthase activity5.53E-04
36GO:0003844: 1,4-alpha-glucan branching enzyme activity5.53E-04
37GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity5.53E-04
38GO:0004614: phosphoglucomutase activity5.53E-04
39GO:0004512: inositol-3-phosphate synthase activity5.53E-04
40GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.53E-04
41GO:0008967: phosphoglycolate phosphatase activity5.53E-04
42GO:0010291: carotene beta-ring hydroxylase activity5.53E-04
43GO:0047746: chlorophyllase activity5.53E-04
44GO:0010297: heteropolysaccharide binding5.53E-04
45GO:0009977: proton motive force dependent protein transmembrane transporter activity5.53E-04
46GO:0004565: beta-galactosidase activity7.18E-04
47GO:0031072: heat shock protein binding7.18E-04
48GO:0043169: cation binding8.99E-04
49GO:0004373: glycogen (starch) synthase activity8.99E-04
50GO:0003913: DNA photolyase activity8.99E-04
51GO:0071917: triose-phosphate transmembrane transporter activity8.99E-04
52GO:0015462: ATPase-coupled protein transmembrane transporter activity8.99E-04
53GO:0004324: ferredoxin-NADP+ reductase activity8.99E-04
54GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.28E-03
55GO:0004375: glycine dehydrogenase (decarboxylating) activity1.28E-03
56GO:0016149: translation release factor activity, codon specific1.28E-03
57GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.28E-03
58GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.28E-03
59GO:0008508: bile acid:sodium symporter activity1.28E-03
60GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.28E-03
61GO:0009011: starch synthase activity1.71E-03
62GO:0008891: glycolate oxidase activity1.71E-03
63GO:0015120: phosphoglycerate transmembrane transporter activity1.71E-03
64GO:0016279: protein-lysine N-methyltransferase activity1.71E-03
65GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.71E-03
66GO:0047134: protein-disulfide reductase activity1.87E-03
67GO:0003959: NADPH dehydrogenase activity2.19E-03
68GO:0051538: 3 iron, 4 sulfur cluster binding2.19E-03
69GO:0004791: thioredoxin-disulfide reductase activity2.34E-03
70GO:0005509: calcium ion binding2.63E-03
71GO:0005515: protein binding2.63E-03
72GO:2001070: starch binding2.70E-03
73GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.05E-03
74GO:0004017: adenylate kinase activity3.24E-03
75GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.24E-03
76GO:0046872: metal ion binding3.67E-03
77GO:0009881: photoreceptor activity3.82E-03
78GO:0008135: translation factor activity, RNA binding5.08E-03
79GO:0003747: translation release factor activity5.75E-03
80GO:0003746: translation elongation factor activity6.39E-03
81GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity6.46E-03
82GO:0030234: enzyme regulator activity7.20E-03
83GO:0005315: inorganic phosphate transmembrane transporter activity9.57E-03
84GO:0004089: carbonate dehydratase activity9.57E-03
85GO:0003712: transcription cofactor activity1.13E-02
86GO:0003735: structural constituent of ribosome1.18E-02
87GO:0005528: FK506 binding1.31E-02
88GO:0004857: enzyme inhibitor activity1.31E-02
89GO:0004176: ATP-dependent peptidase activity1.50E-02
90GO:0008408: 3'-5' exonuclease activity1.50E-02
91GO:0051082: unfolded protein binding1.59E-02
92GO:0015035: protein disulfide oxidoreductase activity1.64E-02
93GO:0016491: oxidoreductase activity1.65E-02
94GO:0022891: substrate-specific transmembrane transporter activity1.71E-02
95GO:0003756: protein disulfide isomerase activity1.81E-02
96GO:0008514: organic anion transmembrane transporter activity1.81E-02
97GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.05E-02
98GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.14E-02
99GO:0005355: glucose transmembrane transporter activity2.25E-02
100GO:0050662: coenzyme binding2.25E-02
101GO:0010181: FMN binding2.25E-02
102GO:0015144: carbohydrate transmembrane transporter activity2.38E-02
103GO:0048038: quinone binding2.48E-02
104GO:0005351: sugar:proton symporter activity2.69E-02
105GO:0016413: O-acetyltransferase activity3.10E-02
106GO:0016787: hydrolase activity3.73E-02
107GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.76E-02
108GO:0008236: serine-type peptidase activity3.76E-02
109GO:0000287: magnesium ion binding4.16E-02
110GO:0030145: manganese ion binding4.32E-02
111GO:0003993: acid phosphatase activity4.76E-02
RankGO TermAdjusted P value
1GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
2GO:0009783: photosystem II antenna complex0.00E+00
3GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
4GO:0043233: organelle lumen0.00E+00
5GO:0042579: microbody0.00E+00
6GO:0017133: mitochondrial electron transfer flavoprotein complex0.00E+00
7GO:0043235: receptor complex0.00E+00
8GO:0009534: chloroplast thylakoid1.90E-79
9GO:0009507: chloroplast1.88E-73
10GO:0009535: chloroplast thylakoid membrane1.07E-64
11GO:0009941: chloroplast envelope2.14E-51
12GO:0009579: thylakoid2.86E-46
13GO:0009570: chloroplast stroma2.60E-33
14GO:0010287: plastoglobule3.15E-28
15GO:0009522: photosystem I1.63E-20
16GO:0030076: light-harvesting complex4.90E-19
17GO:0009543: chloroplast thylakoid lumen2.66E-14
18GO:0031977: thylakoid lumen1.83E-13
19GO:0009517: PSII associated light-harvesting complex II6.24E-13
20GO:0030095: chloroplast photosystem II1.34E-12
21GO:0009523: photosystem II2.53E-12
22GO:0048046: apoplast2.11E-11
23GO:0009538: photosystem I reaction center2.72E-10
24GO:0009654: photosystem II oxygen evolving complex7.45E-10
25GO:0019898: extrinsic component of membrane9.53E-09
26GO:0009508: plastid chromosome7.77E-07
27GO:0010319: stromule1.06E-06
28GO:0016020: membrane1.55E-06
29GO:0042651: thylakoid membrane2.82E-06
30GO:0030093: chloroplast photosystem I2.91E-06
31GO:0009706: chloroplast inner membrane3.57E-06
32GO:0010007: magnesium chelatase complex1.05E-05
33GO:0031969: chloroplast membrane1.09E-05
34GO:0009295: nucleoid2.76E-05
35GO:0055035: plastid thylakoid membrane6.89E-05
36GO:0009501: amyloplast2.32E-04
37GO:0009782: photosystem I antenna complex2.51E-04
38GO:0000791: euchromatin2.51E-04
39GO:0009515: granal stacked thylakoid2.51E-04
40GO:0031361: integral component of thylakoid membrane2.51E-04
41GO:0005840: ribosome2.73E-04
42GO:0016021: integral component of membrane3.06E-04
43GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.46E-04
44GO:0030870: Mre11 complex5.53E-04
45GO:0043036: starch grain5.53E-04
46GO:0000427: plastid-encoded plastid RNA polymerase complex5.53E-04
47GO:0005623: cell6.28E-04
48GO:0032040: small-subunit processome6.33E-04
49GO:0009528: plastid inner membrane8.99E-04
50GO:0033281: TAT protein transport complex8.99E-04
51GO:0005782: peroxisomal matrix8.99E-04
52GO:0009509: chromoplast8.99E-04
53GO:0005960: glycine cleavage complex1.28E-03
54GO:0009544: chloroplast ATP synthase complex1.71E-03
55GO:0009527: plastid outer membrane1.71E-03
56GO:0000795: synaptonemal complex2.19E-03
57GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.70E-03
58GO:0009533: chloroplast stromal thylakoid3.82E-03
59GO:0031305: integral component of mitochondrial inner membrane4.44E-03
60GO:0042644: chloroplast nucleoid5.75E-03
61GO:0005763: mitochondrial small ribosomal subunit5.75E-03
62GO:0005740: mitochondrial envelope7.20E-03
63GO:0005777: peroxisome1.40E-02
64GO:0009532: plastid stroma1.50E-02
65GO:0000785: chromatin2.60E-02
66GO:0009707: chloroplast outer membrane3.90E-02
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Gene type



Gene DE type