Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G63510

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0030155: regulation of cell adhesion0.00E+00
3GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
4GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
5GO:0016553: base conversion or substitution editing0.00E+00
6GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
7GO:0090627: plant epidermal cell differentiation0.00E+00
8GO:0005996: monosaccharide metabolic process0.00E+00
9GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
10GO:1905177: tracheary element differentiation0.00E+00
11GO:0007172: signal complex assembly0.00E+00
12GO:0018023: peptidyl-lysine trimethylation0.00E+00
13GO:0006429: leucyl-tRNA aminoacylation0.00E+00
14GO:1905421: regulation of plant organ morphogenesis0.00E+00
15GO:0015979: photosynthesis5.19E-13
16GO:0032544: plastid translation1.14E-10
17GO:0006412: translation5.87E-10
18GO:0009735: response to cytokinin1.34E-08
19GO:0042254: ribosome biogenesis3.28E-08
20GO:0009773: photosynthetic electron transport in photosystem I1.07E-07
21GO:0010027: thylakoid membrane organization1.51E-06
22GO:0009409: response to cold1.69E-06
23GO:0019464: glycine decarboxylation via glycine cleavage system2.12E-06
24GO:0015995: chlorophyll biosynthetic process2.53E-06
25GO:0018026: peptidyl-lysine monomethylation1.30E-05
26GO:0030388: fructose 1,6-bisphosphate metabolic process1.30E-05
27GO:0009658: chloroplast organization2.78E-05
28GO:0006418: tRNA aminoacylation for protein translation3.14E-05
29GO:0061077: chaperone-mediated protein folding3.82E-05
30GO:0006000: fructose metabolic process4.36E-05
31GO:0010206: photosystem II repair6.56E-05
32GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly9.29E-05
33GO:0010021: amylopectin biosynthetic process1.60E-04
34GO:0006094: gluconeogenesis2.02E-04
35GO:0032543: mitochondrial translation2.44E-04
36GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.43E-04
37GO:0042026: protein refolding4.58E-04
38GO:0006431: methionyl-tRNA aminoacylation5.46E-04
39GO:0000025: maltose catabolic process5.46E-04
40GO:0005980: glycogen catabolic process5.46E-04
41GO:0006438: valyl-tRNA aminoacylation5.46E-04
42GO:0043489: RNA stabilization5.46E-04
43GO:0080093: regulation of photorespiration5.46E-04
44GO:0043007: maintenance of rDNA5.46E-04
45GO:0031998: regulation of fatty acid beta-oxidation5.46E-04
46GO:0010028: xanthophyll cycle5.46E-04
47GO:0000023: maltose metabolic process5.46E-04
48GO:0005978: glycogen biosynthetic process7.29E-04
49GO:0006002: fructose 6-phosphate metabolic process8.88E-04
50GO:0019252: starch biosynthetic process1.10E-03
51GO:0019388: galactose catabolic process1.17E-03
52GO:0005976: polysaccharide metabolic process1.17E-03
53GO:0090342: regulation of cell aging1.17E-03
54GO:0031648: protein destabilization1.17E-03
55GO:0016122: xanthophyll metabolic process1.17E-03
56GO:0010270: photosystem II oxygen evolving complex assembly1.17E-03
57GO:0006782: protoporphyrinogen IX biosynthetic process1.46E-03
58GO:0048281: inflorescence morphogenesis1.93E-03
59GO:0009405: pathogenesis1.93E-03
60GO:0006518: peptide metabolic process1.93E-03
61GO:0010623: programmed cell death involved in cell development1.93E-03
62GO:0080055: low-affinity nitrate transport1.93E-03
63GO:0016050: vesicle organization1.93E-03
64GO:0005983: starch catabolic process1.94E-03
65GO:0005986: sucrose biosynthetic process2.20E-03
66GO:0010020: chloroplast fission2.48E-03
67GO:0009817: defense response to fungus, incompatible interaction2.70E-03
68GO:0051085: chaperone mediated protein folding requiring cofactor2.80E-03
69GO:0006241: CTP biosynthetic process2.80E-03
70GO:0010731: protein glutathionylation2.80E-03
71GO:0006424: glutamyl-tRNA aminoacylation2.80E-03
72GO:0006165: nucleoside diphosphate phosphorylation2.80E-03
73GO:0006228: UTP biosynthetic process2.80E-03
74GO:0010148: transpiration2.80E-03
75GO:0009590: detection of gravity2.80E-03
76GO:0009631: cold acclimation3.25E-03
77GO:0006289: nucleotide-excision repair3.45E-03
78GO:0051322: anaphase3.76E-03
79GO:0006109: regulation of carbohydrate metabolic process3.76E-03
80GO:0006183: GTP biosynthetic process3.76E-03
81GO:0045727: positive regulation of translation3.76E-03
82GO:0015994: chlorophyll metabolic process3.76E-03
83GO:2000122: negative regulation of stomatal complex development3.76E-03
84GO:0015846: polyamine transport3.76E-03
85GO:0010600: regulation of auxin biosynthetic process3.76E-03
86GO:0006546: glycine catabolic process3.76E-03
87GO:0010508: positive regulation of autophagy3.76E-03
88GO:0051205: protein insertion into membrane3.76E-03
89GO:0010037: response to carbon dioxide3.76E-03
90GO:0015976: carbon utilization3.76E-03
91GO:0006631: fatty acid metabolic process4.56E-03
92GO:0000304: response to singlet oxygen4.83E-03
93GO:0016120: carotene biosynthetic process4.83E-03
94GO:0006544: glycine metabolic process4.83E-03
95GO:0045038: protein import into chloroplast thylakoid membrane4.83E-03
96GO:0006097: glyoxylate cycle4.83E-03
97GO:0006461: protein complex assembly4.83E-03
98GO:0006284: base-excision repair5.46E-03
99GO:0000470: maturation of LSU-rRNA5.99E-03
100GO:0009913: epidermal cell differentiation5.99E-03
101GO:0042793: transcription from plastid promoter5.99E-03
102GO:0006828: manganese ion transport5.99E-03
103GO:0010190: cytochrome b6f complex assembly5.99E-03
104GO:0006563: L-serine metabolic process5.99E-03
105GO:0010304: PSII associated light-harvesting complex II catabolic process5.99E-03
106GO:0042549: photosystem II stabilization5.99E-03
107GO:0009955: adaxial/abaxial pattern specification7.24E-03
108GO:0010244: response to low fluence blue light stimulus by blue low-fluence system7.24E-03
109GO:0006458: 'de novo' protein folding7.24E-03
110GO:1901259: chloroplast rRNA processing7.24E-03
111GO:0030488: tRNA methylation7.24E-03
112GO:0070370: cellular heat acclimation8.57E-03
113GO:0010196: nonphotochemical quenching8.57E-03
114GO:0010103: stomatal complex morphogenesis8.57E-03
115GO:0010161: red light signaling pathway8.57E-03
116GO:0010928: regulation of auxin mediated signaling pathway9.98E-03
117GO:0030091: protein repair9.98E-03
118GO:0009704: de-etiolation9.98E-03
119GO:0006353: DNA-templated transcription, termination9.98E-03
120GO:0008152: metabolic process1.01E-02
121GO:0006810: transport1.04E-02
122GO:0055114: oxidation-reduction process1.04E-02
123GO:0015996: chlorophyll catabolic process1.15E-02
124GO:0001558: regulation of cell growth1.15E-02
125GO:0009657: plastid organization1.15E-02
126GO:0006979: response to oxidative stress1.16E-02
127GO:0051865: protein autoubiquitination1.30E-02
128GO:0006783: heme biosynthetic process1.30E-02
129GO:0009627: systemic acquired resistance1.39E-02
130GO:0010205: photoinhibition1.47E-02
131GO:0006779: porphyrin-containing compound biosynthetic process1.47E-02
132GO:0035999: tetrahydrofolate interconversion1.47E-02
133GO:0042761: very long-chain fatty acid biosynthetic process1.47E-02
134GO:0005982: starch metabolic process1.47E-02
135GO:0048481: plant ovule development1.62E-02
136GO:0043069: negative regulation of programmed cell death1.64E-02
137GO:0048829: root cap development1.64E-02
138GO:0031627: telomeric loop formation1.64E-02
139GO:0006816: calcium ion transport1.82E-02
140GO:0019684: photosynthesis, light reaction1.82E-02
141GO:0009089: lysine biosynthetic process via diaminopimelate1.82E-02
142GO:0009073: aromatic amino acid family biosynthetic process1.82E-02
143GO:0043085: positive regulation of catalytic activity1.82E-02
144GO:0000272: polysaccharide catabolic process1.82E-02
145GO:0006415: translational termination1.82E-02
146GO:0009750: response to fructose1.82E-02
147GO:0018119: peptidyl-cysteine S-nitrosylation1.82E-02
148GO:0016485: protein processing1.82E-02
149GO:0009790: embryo development1.89E-02
150GO:0045037: protein import into chloroplast stroma2.00E-02
151GO:0009853: photorespiration2.06E-02
152GO:0034599: cellular response to oxidative stress2.16E-02
153GO:0010628: positive regulation of gene expression2.19E-02
154GO:0010102: lateral root morphogenesis2.19E-02
155GO:0006108: malate metabolic process2.19E-02
156GO:0006006: glucose metabolic process2.19E-02
157GO:0007623: circadian rhythm2.33E-02
158GO:0019253: reductive pentose-phosphate cycle2.39E-02
159GO:0009266: response to temperature stimulus2.39E-02
160GO:0009934: regulation of meristem structural organization2.39E-02
161GO:0006302: double-strand break repair2.39E-02
162GO:0005985: sucrose metabolic process2.59E-02
163GO:0010025: wax biosynthetic process2.80E-02
164GO:0006636: unsaturated fatty acid biosynthetic process2.80E-02
165GO:0009793: embryo development ending in seed dormancy2.90E-02
166GO:0042742: defense response to bacterium2.96E-02
167GO:0009944: polarity specification of adaxial/abaxial axis3.01E-02
168GO:0000027: ribosomal large subunit assembly3.01E-02
169GO:0007017: microtubule-based process3.23E-02
170GO:0051302: regulation of cell division3.23E-02
171GO:0019915: lipid storage3.46E-02
172GO:0031408: oxylipin biosynthetic process3.46E-02
173GO:0051321: meiotic cell cycle3.46E-02
174GO:0016114: terpenoid biosynthetic process3.46E-02
175GO:0003333: amino acid transmembrane transport3.46E-02
176GO:0006364: rRNA processing3.59E-02
177GO:0009585: red, far-red light phototransduction3.59E-02
178GO:0030245: cellulose catabolic process3.69E-02
179GO:0010017: red or far-red light signaling pathway3.69E-02
180GO:0016226: iron-sulfur cluster assembly3.69E-02
181GO:2000022: regulation of jasmonic acid mediated signaling pathway3.69E-02
182GO:0035428: hexose transmembrane transport3.69E-02
183GO:0007005: mitochondrion organization3.69E-02
184GO:0009686: gibberellin biosynthetic process3.92E-02
185GO:0009411: response to UV3.92E-02
186GO:0001944: vasculature development3.92E-02
187GO:0010089: xylem development4.17E-02
188GO:0006096: glycolytic process4.24E-02
189GO:0016117: carotenoid biosynthetic process4.41E-02
190GO:0042631: cellular response to water deprivation4.66E-02
191GO:0042335: cuticle development4.66E-02
192GO:0006662: glycerol ether metabolic process4.91E-02
193GO:0046323: glucose import4.91E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
3GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
4GO:0046422: violaxanthin de-epoxidase activity0.00E+00
5GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
6GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
7GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
8GO:0016166: phytoene dehydrogenase activity0.00E+00
9GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
10GO:0004822: isoleucine-tRNA ligase activity0.00E+00
11GO:0004823: leucine-tRNA ligase activity0.00E+00
12GO:0009899: ent-kaurene synthase activity0.00E+00
13GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
14GO:0019843: rRNA binding7.49E-17
15GO:0003735: structural constituent of ribosome1.24E-12
16GO:0005528: FK506 binding4.01E-10
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.03E-07
18GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.30E-05
19GO:0010297: heteropolysaccharide binding1.30E-05
20GO:0002161: aminoacyl-tRNA editing activity4.36E-05
21GO:0004812: aminoacyl-tRNA ligase activity7.51E-05
22GO:0004375: glycine dehydrogenase (decarboxylating) activity9.29E-05
23GO:0016851: magnesium chelatase activity9.29E-05
24GO:0044183: protein binding involved in protein folding1.37E-04
25GO:0016279: protein-lysine N-methyltransferase activity1.60E-04
26GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.60E-04
27GO:0008266: poly(U) RNA binding2.40E-04
28GO:0004602: glutathione peroxidase activity4.58E-04
29GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity5.46E-04
30GO:0008184: glycogen phosphorylase activity5.46E-04
31GO:0004856: xylulokinase activity5.46E-04
32GO:0080132: fatty acid alpha-hydroxylase activity5.46E-04
33GO:0004134: 4-alpha-glucanotransferase activity5.46E-04
34GO:0004645: phosphorylase activity5.46E-04
35GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity5.46E-04
36GO:0034256: chlorophyll(ide) b reductase activity5.46E-04
37GO:0004853: uroporphyrinogen decarboxylase activity5.46E-04
38GO:0045485: omega-6 fatty acid desaturase activity5.46E-04
39GO:0004832: valine-tRNA ligase activity5.46E-04
40GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.46E-04
41GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity5.46E-04
42GO:0004825: methionine-tRNA ligase activity5.46E-04
43GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity5.46E-04
44GO:0016491: oxidoreductase activity1.14E-03
45GO:0033201: alpha-1,4-glucan synthase activity1.17E-03
46GO:0018708: thiol S-methyltransferase activity1.17E-03
47GO:0003844: 1,4-alpha-glucan branching enzyme activity1.17E-03
48GO:0004614: phosphoglucomutase activity1.17E-03
49GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.17E-03
50GO:0008967: phosphoglycolate phosphatase activity1.17E-03
51GO:0016868: intramolecular transferase activity, phosphotransferases1.17E-03
52GO:0048038: quinone binding1.20E-03
53GO:0047372: acylglycerol lipase activity1.69E-03
54GO:0043169: cation binding1.93E-03
55GO:0004373: glycogen (starch) synthase activity1.93E-03
56GO:0005504: fatty acid binding1.93E-03
57GO:0090729: toxin activity1.93E-03
58GO:0045174: glutathione dehydrogenase (ascorbate) activity1.93E-03
59GO:0030267: glyoxylate reductase (NADP) activity1.93E-03
60GO:0080054: low-affinity nitrate transmembrane transporter activity1.93E-03
61GO:0004324: ferredoxin-NADP+ reductase activity1.93E-03
62GO:0031072: heat shock protein binding2.20E-03
63GO:0051082: unfolded protein binding2.49E-03
64GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.80E-03
65GO:0016149: translation release factor activity, codon specific2.80E-03
66GO:0015203: polyamine transmembrane transporter activity2.80E-03
67GO:0004550: nucleoside diphosphate kinase activity2.80E-03
68GO:0043023: ribosomal large subunit binding2.80E-03
69GO:0004222: metalloendopeptidase activity3.06E-03
70GO:0045430: chalcone isomerase activity3.76E-03
71GO:0009011: starch synthase activity3.76E-03
72GO:0019199: transmembrane receptor protein kinase activity3.76E-03
73GO:0042277: peptide binding3.76E-03
74GO:0019104: DNA N-glycosylase activity3.76E-03
75GO:0004252: serine-type endopeptidase activity4.12E-03
76GO:0004372: glycine hydroxymethyltransferase activity4.83E-03
77GO:0003959: NADPH dehydrogenase activity4.83E-03
78GO:0016773: phosphotransferase activity, alcohol group as acceptor4.83E-03
79GO:0004040: amidase activity4.83E-03
80GO:0008725: DNA-3-methyladenine glycosylase activity4.83E-03
81GO:0030570: pectate lyase activity5.01E-03
82GO:0043621: protein self-association5.59E-03
83GO:0004332: fructose-bisphosphate aldolase activity5.99E-03
84GO:0004130: cytochrome-c peroxidase activity5.99E-03
85GO:0016615: malate dehydrogenase activity5.99E-03
86GO:2001070: starch binding5.99E-03
87GO:0033743: peptide-methionine (R)-S-oxide reductase activity7.24E-03
88GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity7.24E-03
89GO:0030060: L-malate dehydrogenase activity7.24E-03
90GO:0051920: peroxiredoxin activity7.24E-03
91GO:0050662: coenzyme binding7.43E-03
92GO:0004033: aldo-keto reductase (NADP) activity9.98E-03
93GO:0005337: nucleoside transmembrane transporter activity9.98E-03
94GO:0016209: antioxidant activity9.98E-03
95GO:0000287: magnesium ion binding1.09E-02
96GO:0008173: RNA methyltransferase activity1.15E-02
97GO:0003747: translation release factor activity1.30E-02
98GO:0015174: basic amino acid transmembrane transporter activity1.47E-02
99GO:0005384: manganese ion transmembrane transporter activity1.47E-02
100GO:0008236: serine-type peptidase activity1.54E-02
101GO:0008047: enzyme activator activity1.64E-02
102GO:0030170: pyridoxal phosphate binding1.77E-02
103GO:0003691: double-stranded telomeric DNA binding1.82E-02
104GO:0000049: tRNA binding2.00E-02
105GO:0004565: beta-galactosidase activity2.19E-02
106GO:0004022: alcohol dehydrogenase (NAD) activity2.19E-02
107GO:0004089: carbonate dehydratase activity2.19E-02
108GO:0015095: magnesium ion transmembrane transporter activity2.19E-02
109GO:0003924: GTPase activity2.77E-02
110GO:0051536: iron-sulfur cluster binding3.01E-02
111GO:0004857: enzyme inhibitor activity3.01E-02
112GO:0033612: receptor serine/threonine kinase binding3.46E-02
113GO:0008408: 3'-5' exonuclease activity3.46E-02
114GO:0008810: cellulase activity3.92E-02
115GO:0022891: substrate-specific transmembrane transporter activity3.92E-02
116GO:0003756: protein disulfide isomerase activity4.17E-02
117GO:0047134: protein-disulfide reductase activity4.41E-02
RankGO TermAdjusted P value
1GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
4GO:0044391: ribosomal subunit0.00E+00
5GO:0042579: microbody0.00E+00
6GO:0009507: chloroplast4.86E-89
7GO:0009570: chloroplast stroma1.54E-75
8GO:0009941: chloroplast envelope4.65E-48
9GO:0009534: chloroplast thylakoid1.04E-43
10GO:0009535: chloroplast thylakoid membrane4.43E-39
11GO:0009579: thylakoid5.49E-31
12GO:0009543: chloroplast thylakoid lumen7.84E-20
13GO:0031977: thylakoid lumen4.31E-17
14GO:0005840: ribosome1.50E-14
15GO:0010319: stromule1.30E-09
16GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.41E-08
17GO:0009508: plastid chromosome2.40E-07
18GO:0030095: chloroplast photosystem II3.45E-07
19GO:0009295: nucleoid1.05E-06
20GO:0010287: plastoglobule1.47E-06
21GO:0009706: chloroplast inner membrane9.39E-06
22GO:0000427: plastid-encoded plastid RNA polymerase complex1.30E-05
23GO:0009654: photosystem II oxygen evolving complex3.14E-05
24GO:0009538: photosystem I reaction center3.45E-05
25GO:0010007: magnesium chelatase complex4.36E-05
26GO:0005960: glycine cleavage complex9.29E-05
27GO:0009536: plastid9.77E-05
28GO:0019898: extrinsic component of membrane1.30E-04
29GO:0048046: apoplast2.63E-04
30GO:0000791: euchromatin5.46E-04
31GO:0009533: chloroplast stromal thylakoid5.86E-04
32GO:0009501: amyloplast7.29E-04
33GO:0030093: chloroplast photosystem I1.17E-03
34GO:0030870: Mre11 complex1.17E-03
35GO:0009509: chromoplast1.93E-03
36GO:0000311: plastid large ribosomal subunit1.94E-03
37GO:0015934: large ribosomal subunit3.25E-03
38GO:0042651: thylakoid membrane3.81E-03
39GO:0015935: small ribosomal subunit4.19E-03
40GO:0031969: chloroplast membrane4.28E-03
41GO:0000795: synaptonemal complex4.83E-03
42GO:0016020: membrane5.55E-03
43GO:0009840: chloroplastic endopeptidase Clp complex7.24E-03
44GO:0000783: nuclear telomere cap complex1.15E-02
45GO:0042644: chloroplast nucleoid1.30E-02
46GO:0045298: tubulin complex1.30E-02
47GO:0005763: mitochondrial small ribosomal subunit1.30E-02
48GO:0022626: cytosolic ribosome2.11E-02
49GO:0009574: preprophase band2.19E-02
50GO:0043234: protein complex2.80E-02
51GO:0009532: plastid stroma3.46E-02
<
Gene type



Gene DE type