co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G63090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0039694: viral RNA genome replication	0.00E+00
2	GO:1902184: negative regulation of shoot apical meristem development	0.00E+00
3	GO:0080180: 2-methylguanosine metabolic process	0.00E+00
4	GO:0006364: rRNA processing	7.91E-07
5	GO:0009451: RNA modification	5.97E-06
6	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	3.00E-05
7	GO:0043985: histone H4-R3 methylation	3.00E-05
8	GO:0010501: RNA secondary structure unwinding	1.20E-04
9	GO:0042780: tRNA 3'-end processing	1.32E-04
10	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.32E-04
11	GO:0045604: regulation of epidermal cell differentiation	1.32E-04
12	GO:0006421: asparaginyl-tRNA aminoacylation	1.32E-04
13	GO:0046345: abscisic acid catabolic process	2.67E-04
14	GO:0000741: karyogamy	4.20E-04
15	GO:0048444: floral organ morphogenesis	5.02E-04
16	GO:0010077: maintenance of inflorescence meristem identity	5.02E-04
17	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.02E-04
18	GO:0006400: tRNA modification	5.88E-04
19	GO:0045995: regulation of embryonic development	5.88E-04
20	GO:0000028: ribosomal small subunit assembly	6.76E-04
21	GO:0042255: ribosome assembly	6.76E-04
22	GO:0001522: pseudouridine synthesis	6.76E-04
23	GO:0006417: regulation of translation	7.52E-04
24	GO:2000024: regulation of leaf development	8.63E-04
25	GO:0006349: regulation of gene expression by genetic imprinting	9.61E-04
26	GO:0010030: positive regulation of seed germination	1.61E-03
27	GO:0042254: ribosome biogenesis	2.51E-03
28	GO:0009561: megagametogenesis	2.52E-03
29	GO:0010197: polar nucleus fusion	2.94E-03
30	GO:0009960: endosperm development	2.94E-03
31	GO:0048825: cotyledon development	3.24E-03
32	GO:0006950: response to stress	4.88E-03
33	GO:0009793: embryo development ending in seed dormancy	7.69E-03
34	GO:0006260: DNA replication	8.38E-03
35	GO:0051301: cell division	8.62E-03
36	GO:0006351: transcription, DNA-templated	9.52E-03
37	GO:0016569: covalent chromatin modification	1.11E-02
38	GO:0009553: embryo sac development	1.13E-02
39	GO:0009790: embryo development	1.51E-02
40	GO:0007166: cell surface receptor signaling pathway	1.87E-02
41	GO:0007049: cell cycle	2.51E-02
42	GO:0045892: negative regulation of transcription, DNA-templated	3.11E-02
43	GO:0032259: methylation	3.47E-02

Rank	GO Term	Adjusted P value
1	GO:0000166: nucleotide binding	3.74E-10
2	GO:0004519: endonuclease activity	2.68E-06
3	GO:0004004: ATP-dependent RNA helicase activity	8.06E-06
4	GO:0003723: RNA binding	1.56E-05
5	GO:0016274: protein-arginine N-methyltransferase activity	3.00E-05
6	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	7.58E-05
7	GO:0004816: asparagine-tRNA ligase activity	1.32E-04
8	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.32E-04
9	GO:0070181: small ribosomal subunit rRNA binding	1.32E-04
10	GO:0048027: mRNA 5'-UTR binding	1.97E-04
11	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	6.82E-04
12	GO:0008026: ATP-dependent helicase activity	1.01E-03
13	GO:0001054: RNA polymerase I activity	1.16E-03
14	GO:0001056: RNA polymerase III activity	1.27E-03
15	GO:0003887: DNA-directed DNA polymerase activity	1.73E-03
16	GO:0003729: mRNA binding	4.39E-03
17	GO:0000987: core promoter proximal region sequence-specific DNA binding	6.35E-03
18	GO:0004386: helicase activity	1.23E-02
19	GO:0003677: DNA binding	1.25E-02
20	GO:0003676: nucleic acid binding	1.60E-02
21	GO:0008168: methyltransferase activity	2.26E-02

Rank	GO Term	Adjusted P value
1	GO:0034455: t-UTP complex	0.00E+00
2	GO:0019034: viral replication complex	0.00E+00
3	GO:0005730: nucleolus	5.21E-08
4	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	5.63E-07
5	GO:0005844: polysome	2.67E-04
6	GO:0005634: nucleus	3.68E-04
7	GO:0005834: heterotrimeric G-protein complex	8.51E-04
8	GO:0005763: mitochondrial small ribosomal subunit	8.63E-04
9	GO:0005736: DNA-directed RNA polymerase I complex	8.63E-04
10	GO:0005666: DNA-directed RNA polymerase III complex	9.61E-04
11	GO:0043234: protein complex	1.73E-03
12	GO:0005739: mitochondrion	2.08E-03
13	GO:0005759: mitochondrial matrix	1.59E-02
14	GO:0022627: cytosolic small ribosomal subunit	2.08E-02
15	GO:0005743: mitochondrial inner membrane	3.40E-02