co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G62970

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0045747: positive regulation of Notch signaling pathway	0.00E+00
3	GO:0071000: response to magnetism	0.00E+00
4	GO:0019279: L-methionine biosynthetic process from L-homoserine via cystathionine	0.00E+00
5	GO:0032928: regulation of superoxide anion generation	0.00E+00
6	GO:0010117: photoprotection	2.48E-05
7	GO:0010190: cytochrome b6f complex assembly	3.71E-05
8	GO:0071266: 'de novo' L-methionine biosynthetic process	1.35E-04
9	GO:0019346: transsulfuration	1.35E-04
10	GO:0019343: cysteine biosynthetic process via cystathionine	1.35E-04
11	GO:0071806: protein transmembrane transport	1.35E-04
12	GO:0072387: flavin adenine dinucleotide metabolic process	1.35E-04
13	GO:0071461: cellular response to redox state	1.35E-04
14	GO:0048438: floral whorl development	1.35E-04
15	GO:0010343: singlet oxygen-mediated programmed cell death	3.11E-04
16	GO:1901529: positive regulation of anion channel activity	3.11E-04
17	GO:2000071: regulation of defense response by callose deposition	3.11E-04
18	GO:0080005: photosystem stoichiometry adjustment	3.11E-04
19	GO:0048314: embryo sac morphogenesis	3.11E-04
20	GO:0010617: circadian regulation of calcium ion oscillation	3.11E-04
21	GO:0050688: regulation of defense response to virus	3.11E-04
22	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	3.11E-04
23	GO:0099402: plant organ development	3.11E-04
24	GO:0016122: xanthophyll metabolic process	3.11E-04
25	GO:0009658: chloroplast organization	5.10E-04
26	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	5.13E-04
27	GO:1902448: positive regulation of shade avoidance	5.13E-04
28	GO:0006013: mannose metabolic process	5.13E-04
29	GO:1901672: positive regulation of systemic acquired resistance	5.13E-04
30	GO:0009150: purine ribonucleotide metabolic process	5.13E-04
31	GO:0006696: ergosterol biosynthetic process	5.13E-04
32	GO:0007017: microtubule-based process	5.33E-04
33	GO:0033014: tetrapyrrole biosynthetic process	7.34E-04
34	GO:1901332: negative regulation of lateral root development	7.34E-04
35	GO:2001141: regulation of RNA biosynthetic process	7.34E-04
36	GO:0016117: carotenoid biosynthetic process	8.13E-04
37	GO:0010118: stomatal movement	8.75E-04
38	GO:0042274: ribosomal small subunit biogenesis	9.73E-04
39	GO:0031935: regulation of chromatin silencing	9.73E-04
40	GO:0006221: pyrimidine nucleotide biosynthetic process	9.73E-04
41	GO:1902347: response to strigolactone	9.73E-04
42	GO:0034613: cellular protein localization	9.73E-04
43	GO:0015743: malate transport	9.73E-04
44	GO:1900864: mitochondrial RNA modification	9.73E-04
45	GO:0009616: virus induced gene silencing	1.23E-03
46	GO:0016120: carotene biosynthetic process	1.23E-03
47	GO:0046283: anthocyanin-containing compound metabolic process	1.23E-03
48	GO:0007094: mitotic spindle assembly checkpoint	1.23E-03
49	GO:0031053: primary miRNA processing	1.51E-03
50	GO:1901371: regulation of leaf morphogenesis	1.51E-03
51	GO:0060918: auxin transport	1.51E-03
52	GO:0016070: RNA metabolic process	1.51E-03
53	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.81E-03
54	GO:0010076: maintenance of floral meristem identity	1.81E-03
55	GO:0010016: shoot system morphogenesis	1.81E-03
56	GO:0010019: chloroplast-nucleus signaling pathway	1.81E-03
57	GO:0010310: regulation of hydrogen peroxide metabolic process	1.81E-03
58	GO:1900056: negative regulation of leaf senescence	2.12E-03
59	GO:0010050: vegetative phase change	2.12E-03
60	GO:0080111: DNA demethylation	2.12E-03
61	GO:0051510: regulation of unidimensional cell growth	2.12E-03
62	GO:0009910: negative regulation of flower development	2.46E-03
63	GO:0048564: photosystem I assembly	2.46E-03
64	GO:0045292: mRNA cis splicing, via spliceosome	2.46E-03
65	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.46E-03
66	GO:0030091: protein repair	2.46E-03
67	GO:0006605: protein targeting	2.46E-03
68	GO:0009704: de-etiolation	2.46E-03
69	GO:0007568: aging	2.46E-03
70	GO:0071482: cellular response to light stimulus	2.81E-03
71	GO:0022900: electron transport chain	2.81E-03
72	GO:0006783: heme biosynthetic process	3.17E-03
73	GO:0009638: phototropism	3.55E-03
74	GO:0006779: porphyrin-containing compound biosynthetic process	3.55E-03
75	GO:0010380: regulation of chlorophyll biosynthetic process	3.55E-03
76	GO:0010267: production of ta-siRNAs involved in RNA interference	3.55E-03
77	GO:1900426: positive regulation of defense response to bacterium	3.55E-03
78	GO:0009688: abscisic acid biosynthetic process	3.95E-03
79	GO:0045036: protein targeting to chloroplast	3.95E-03
80	GO:0031347: regulation of defense response	4.19E-03
81	GO:0009682: induced systemic resistance	4.36E-03
82	GO:0043085: positive regulation of catalytic activity	4.36E-03
83	GO:0006352: DNA-templated transcription, initiation	4.36E-03
84	GO:0006790: sulfur compound metabolic process	4.79E-03
85	GO:0010582: floral meristem determinacy	4.79E-03
86	GO:0009785: blue light signaling pathway	5.22E-03
87	GO:0010075: regulation of meristem growth	5.22E-03
88	GO:0009767: photosynthetic electron transport chain	5.22E-03
89	GO:0010207: photosystem II assembly	5.68E-03
90	GO:0009266: response to temperature stimulus	5.68E-03
91	GO:0090351: seedling development	6.14E-03
92	GO:0000162: tryptophan biosynthetic process	6.62E-03
93	GO:0010025: wax biosynthetic process	6.62E-03
94	GO:2000377: regulation of reactive oxygen species metabolic process	7.11E-03
95	GO:0051321: meiotic cell cycle	8.14E-03
96	GO:0016226: iron-sulfur cluster assembly	8.67E-03
97	GO:2000022: regulation of jasmonic acid mediated signaling pathway	8.67E-03
98	GO:0006284: base-excision repair	9.77E-03
99	GO:0009646: response to absence of light	1.21E-02
100	GO:0006814: sodium ion transport	1.21E-02
101	GO:0042752: regulation of circadian rhythm	1.21E-02
102	GO:0009791: post-embryonic development	1.27E-02
103	GO:0009851: auxin biosynthetic process	1.27E-02
104	GO:0080156: mitochondrial mRNA modification	1.34E-02
105	GO:0002229: defense response to oomycetes	1.34E-02
106	GO:0030163: protein catabolic process	1.46E-02
107	GO:0006464: cellular protein modification process	1.53E-02
108	GO:0051607: defense response to virus	1.66E-02
109	GO:0016579: protein deubiquitination	1.66E-02
110	GO:0016126: sterol biosynthetic process	1.73E-02
111	GO:0009816: defense response to bacterium, incompatible interaction	1.80E-02
112	GO:0006974: cellular response to DNA damage stimulus	1.88E-02
113	GO:0015995: chlorophyll biosynthetic process	1.95E-02
114	GO:0006950: response to stress	1.95E-02
115	GO:0018298: protein-chromophore linkage	2.09E-02
116	GO:0006811: ion transport	2.24E-02
117	GO:0010218: response to far red light	2.24E-02
118	GO:0010043: response to zinc ion	2.32E-02
119	GO:0000724: double-strand break repair via homologous recombination	2.40E-02
120	GO:0009867: jasmonic acid mediated signaling pathway	2.48E-02
121	GO:0009637: response to blue light	2.48E-02
122	GO:0009640: photomorphogenesis	2.97E-02
123	GO:0010114: response to red light	2.97E-02
124	GO:0009644: response to high light intensity	3.14E-02
125	GO:0006281: DNA repair	3.26E-02
126	GO:0006260: DNA replication	3.40E-02
127	GO:0000165: MAPK cascade	3.40E-02
128	GO:0051603: proteolysis involved in cellular protein catabolic process	3.76E-02
129	GO:0010224: response to UV-B	3.76E-02
130	GO:0006417: regulation of translation	3.95E-02
131	GO:0048367: shoot system development	4.23E-02
132	GO:0055114: oxidation-reduction process	4.29E-02
133	GO:0009620: response to fungus	4.42E-02
134	GO:0009553: embryo sac development	4.62E-02
135	GO:0006508: proteolysis	4.64E-02

Rank	GO Term	Adjusted P value
1	GO:0045436: lycopene beta cyclase activity	0.00E+00
2	GO:0046905: phytoene synthase activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0004848: ureidoglycolate hydrolase activity	3.44E-06
5	GO:0046906: tetrapyrrole binding	1.35E-04
6	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.35E-04
7	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	1.35E-04
8	GO:0004325: ferrochelatase activity	1.35E-04
9	GO:0004121: cystathionine beta-lyase activity	1.35E-04
10	GO:0051996: squalene synthase activity	1.35E-04
11	GO:0030941: chloroplast targeting sequence binding	1.35E-04
12	GO:0004123: cystathionine gamma-lyase activity	1.35E-04
13	GO:0071949: FAD binding	1.40E-04
14	GO:0004046: aminoacylase activity	3.11E-04
15	GO:0015367: oxoglutarate:malate antiporter activity	3.11E-04
16	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	3.11E-04
17	GO:0004180: carboxypeptidase activity	5.13E-04
18	GO:0032947: protein complex scaffold	5.13E-04
19	GO:0003962: cystathionine gamma-synthase activity	5.13E-04
20	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	5.13E-04
21	GO:0000900: translation repressor activity, nucleic acid binding	5.13E-04
22	GO:0000254: C-4 methylsterol oxidase activity	7.34E-04
23	GO:0000339: RNA cap binding	7.34E-04
24	GO:0009882: blue light photoreceptor activity	7.34E-04
25	GO:0047627: adenylylsulfatase activity	7.34E-04
26	GO:0051861: glycolipid binding	9.73E-04
27	GO:0016987: sigma factor activity	9.73E-04
28	GO:0001053: plastid sigma factor activity	9.73E-04
29	GO:0004834: tryptophan synthase activity	9.73E-04
30	GO:0048038: quinone binding	1.15E-03
31	GO:0004559: alpha-mannosidase activity	1.81E-03
32	GO:0019899: enzyme binding	2.12E-03
33	GO:0016787: hydrolase activity	2.44E-03
34	GO:0016491: oxidoreductase activity	3.59E-03
35	GO:0004129: cytochrome-c oxidase activity	4.36E-03
36	GO:0003777: microtubule motor activity	5.15E-03
37	GO:0031072: heat shock protein binding	5.22E-03
38	GO:0003887: DNA-directed DNA polymerase activity	6.62E-03
39	GO:0051536: iron-sulfur cluster binding	7.11E-03
40	GO:0004176: ATP-dependent peptidase activity	8.14E-03
41	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.51E-03
42	GO:0008080: N-acetyltransferase activity	1.15E-02
43	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.34E-02
44	GO:0008237: metallopeptidase activity	1.60E-02
45	GO:0008236: serine-type peptidase activity	2.02E-02
46	GO:0004222: metalloendopeptidase activity	2.24E-02
47	GO:0050897: cobalt ion binding	2.32E-02
48	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.64E-02
49	GO:0005515: protein binding	2.77E-02
50	GO:0004185: serine-type carboxypeptidase activity	2.97E-02
51	GO:0051537: 2 iron, 2 sulfur cluster binding	3.14E-02
52	GO:0005198: structural molecule activity	3.23E-02
53	GO:0005506: iron ion binding	3.24E-02
54	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.67E-02
55	GO:0051082: unfolded protein binding	4.71E-02
56	GO:0016746: transferase activity, transferring acyl groups	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.03E-15
2	GO:0009535: chloroplast thylakoid membrane	7.37E-07
3	GO:0030286: dynein complex	1.51E-05
4	GO:0031969: chloroplast membrane	1.02E-04
5	GO:0005845: mRNA cap binding complex	1.35E-04
6	GO:0005846: nuclear cap binding complex	3.11E-04
7	GO:0005875: microtubule associated complex	4.36E-04
8	GO:0009528: plastid inner membrane	5.13E-04
9	GO:0016605: PML body	5.13E-04
10	GO:0009517: PSII associated light-harvesting complex II	9.73E-04
11	GO:0055035: plastid thylakoid membrane	1.23E-03
12	GO:0005655: nucleolar ribonuclease P complex	1.81E-03
13	GO:0000123: histone acetyltransferase complex	2.12E-03
14	GO:0031359: integral component of chloroplast outer membrane	2.12E-03
15	GO:0009707: chloroplast outer membrane	2.14E-03
16	GO:0046930: pore complex	2.81E-03
17	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.17E-03
18	GO:0016604: nuclear body	3.55E-03
19	GO:0048471: perinuclear region of cytoplasm	4.36E-03
20	GO:0042651: thylakoid membrane	7.62E-03
21	GO:0009536: plastid	1.20E-02
22	GO:0009941: chloroplast envelope	3.21E-02
23	GO:0031966: mitochondrial membrane	3.49E-02
24	GO:0009706: chloroplast inner membrane	4.71E-02