co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G62690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:1905177: tracheary element differentiation	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:0032958: inositol phosphate biosynthetic process	1.77E-04
5	GO:1902265: abscisic acid homeostasis	1.77E-04
6	GO:0097298: regulation of nucleus size	1.77E-04
7	GO:0015709: thiosulfate transport	4.01E-04
8	GO:0071422: succinate transmembrane transport	4.01E-04
9	GO:0071712: ER-associated misfolded protein catabolic process	4.01E-04
10	GO:0048569: post-embryonic animal organ development	4.01E-04
11	GO:0032527: protein exit from endoplasmic reticulum	4.01E-04
12	GO:0009631: cold acclimation	4.07E-04
13	GO:0010143: cutin biosynthetic process	5.04E-04
14	GO:0071367: cellular response to brassinosteroid stimulus	6.55E-04
15	GO:0044210: 'de novo' CTP biosynthetic process	6.55E-04
16	GO:0010623: programmed cell death involved in cell development	6.55E-04
17	GO:0032940: secretion by cell	6.55E-04
18	GO:0010321: regulation of vegetative phase change	9.34E-04
19	GO:0006020: inositol metabolic process	9.34E-04
20	GO:0015729: oxaloacetate transport	9.34E-04
21	GO:0043481: anthocyanin accumulation in tissues in response to UV light	9.34E-04
22	GO:0010104: regulation of ethylene-activated signaling pathway	9.34E-04
23	GO:0071585: detoxification of cadmium ion	1.24E-03
24	GO:0042991: transcription factor import into nucleus	1.24E-03
25	GO:0009687: abscisic acid metabolic process	1.24E-03
26	GO:0046345: abscisic acid catabolic process	1.24E-03
27	GO:0051365: cellular response to potassium ion starvation	1.24E-03
28	GO:0022622: root system development	1.24E-03
29	GO:1901409: positive regulation of phosphorylation of RNA polymerase II C-terminal domain	1.24E-03
30	GO:0010508: positive regulation of autophagy	1.24E-03
31	GO:0042631: cellular response to water deprivation	1.25E-03
32	GO:0048825: cotyledon development	1.55E-03
33	GO:0071423: malate transmembrane transport	1.57E-03
34	GO:0009823: cytokinin catabolic process	1.57E-03
35	GO:0006656: phosphatidylcholine biosynthetic process	1.57E-03
36	GO:0009913: epidermal cell differentiation	1.94E-03
37	GO:0047484: regulation of response to osmotic stress	1.94E-03
38	GO:1900425: negative regulation of defense response to bacterium	1.94E-03
39	GO:0035435: phosphate ion transmembrane transport	1.94E-03
40	GO:0009058: biosynthetic process	2.02E-03
41	GO:0009409: response to cold	2.09E-03
42	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	2.32E-03
43	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.32E-03
44	GO:0009955: adaxial/abaxial pattern specification	2.32E-03
45	GO:0010103: stomatal complex morphogenesis	2.74E-03
46	GO:0032880: regulation of protein localization	2.74E-03
47	GO:0008272: sulfate transport	2.74E-03
48	GO:0009690: cytokinin metabolic process	3.17E-03
49	GO:0009704: de-etiolation	3.17E-03
50	GO:2000070: regulation of response to water deprivation	3.17E-03
51	GO:0019827: stem cell population maintenance	3.17E-03
52	GO:0008610: lipid biosynthetic process	3.17E-03
53	GO:0035265: organ growth	3.17E-03
54	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.17E-03
55	GO:0009819: drought recovery	3.17E-03
56	GO:0001558: regulation of cell growth	3.63E-03
57	GO:0006997: nucleus organization	3.63E-03
58	GO:0009827: plant-type cell wall modification	3.63E-03
59	GO:0006783: heme biosynthetic process	4.10E-03
60	GO:0006098: pentose-phosphate shunt	4.10E-03
61	GO:0042761: very long-chain fatty acid biosynthetic process	4.60E-03
62	GO:0006782: protoporphyrinogen IX biosynthetic process	5.11E-03
63	GO:0009737: response to abscisic acid	5.12E-03
64	GO:0048765: root hair cell differentiation	5.65E-03
65	GO:0009636: response to toxic substance	5.66E-03
66	GO:0005983: starch catabolic process	6.20E-03
67	GO:0016024: CDP-diacylglycerol biosynthetic process	6.20E-03
68	GO:0045037: protein import into chloroplast stroma	6.20E-03
69	GO:0080167: response to karrikin	6.49E-03
70	GO:0009736: cytokinin-activated signaling pathway	6.78E-03
71	GO:0006094: gluconeogenesis	6.78E-03
72	GO:2000012: regulation of auxin polar transport	6.78E-03
73	GO:0010102: lateral root morphogenesis	6.78E-03
74	GO:0010030: positive regulation of seed germination	7.98E-03
75	GO:0043086: negative regulation of catalytic activity	8.02E-03
76	GO:0010025: wax biosynthetic process	8.61E-03
77	GO:0006289: nucleotide-excision repair	9.26E-03
78	GO:0030150: protein import into mitochondrial matrix	9.26E-03
79	GO:0051302: regulation of cell division	9.92E-03
80	GO:0007017: microtubule-based process	9.92E-03
81	GO:0051260: protein homooligomerization	1.06E-02
82	GO:0006351: transcription, DNA-templated	1.06E-02
83	GO:0071369: cellular response to ethylene stimulus	1.20E-02
84	GO:0071215: cellular response to abscisic acid stimulus	1.20E-02
85	GO:0010089: xylem development	1.27E-02
86	GO:0006284: base-excision repair	1.27E-02
87	GO:0070417: cellular response to cold	1.35E-02
88	GO:0008284: positive regulation of cell proliferation	1.35E-02
89	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.35E-02
90	GO:0042335: cuticle development	1.43E-02
91	GO:0009958: positive gravitropism	1.50E-02
92	GO:0010268: brassinosteroid homeostasis	1.50E-02
93	GO:0009749: response to glucose	1.66E-02
94	GO:0019252: starch biosynthetic process	1.66E-02
95	GO:0016132: brassinosteroid biosynthetic process	1.75E-02
96	GO:0010583: response to cyclopentenone	1.83E-02
97	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.88E-02
98	GO:0009639: response to red or far red light	2.00E-02
99	GO:0016125: sterol metabolic process	2.00E-02
100	GO:0019760: glucosinolate metabolic process	2.00E-02
101	GO:0009738: abscisic acid-activated signaling pathway	2.11E-02
102	GO:0006355: regulation of transcription, DNA-templated	2.22E-02
103	GO:0015031: protein transport	2.23E-02
104	GO:0016126: sterol biosynthetic process	2.27E-02
105	GO:0009911: positive regulation of flower development	2.27E-02
106	GO:0006974: cellular response to DNA damage stimulus	2.45E-02
107	GO:0015995: chlorophyll biosynthetic process	2.55E-02
108	GO:0009817: defense response to fungus, incompatible interaction	2.74E-02
109	GO:0000160: phosphorelay signal transduction system	2.84E-02
110	GO:0016567: protein ubiquitination	2.93E-02
111	GO:0009407: toxin catabolic process	2.94E-02
112	GO:0048527: lateral root development	3.04E-02
113	GO:0007568: aging	3.04E-02
114	GO:0048366: leaf development	3.06E-02
115	GO:0016051: carbohydrate biosynthetic process	3.24E-02
116	GO:0009637: response to blue light	3.24E-02
117	GO:0010200: response to chitin	3.33E-02
118	GO:0006839: mitochondrial transport	3.56E-02
119	GO:0006631: fatty acid metabolic process	3.67E-02
120	GO:0008283: cell proliferation	3.88E-02
121	GO:0009744: response to sucrose	3.88E-02
122	GO:0009640: photomorphogenesis	3.88E-02
123	GO:0000209: protein polyubiquitination	4.00E-02
124	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.45E-02
125	GO:0032259: methylation	4.53E-02
126	GO:0042538: hyperosmotic salinity response	4.56E-02
127	GO:0009585: red, far-red light phototransduction	4.80E-02
128	GO:0006813: potassium ion transport	4.80E-02
129	GO:0048364: root development	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0010303: limit dextrinase activity	0.00E+00
3	GO:0051060: pullulanase activity	0.00E+00
4	GO:0003883: CTP synthase activity	1.30E-05
5	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	1.77E-04
6	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	1.77E-04
7	GO:0000829: inositol heptakisphosphate kinase activity	1.77E-04
8	GO:0004105: choline-phosphate cytidylyltransferase activity	1.77E-04
9	GO:0000828: inositol hexakisphosphate kinase activity	1.77E-04
10	GO:0005534: galactose binding	1.77E-04
11	GO:0004853: uroporphyrinogen decarboxylase activity	1.77E-04
12	GO:0018708: thiol S-methyltransferase activity	4.01E-04
13	GO:1901677: phosphate transmembrane transporter activity	4.01E-04
14	GO:0044390: ubiquitin-like protein conjugating enzyme binding	4.01E-04
15	GO:0050736: O-malonyltransferase activity	4.01E-04
16	GO:0015117: thiosulfate transmembrane transporter activity	4.01E-04
17	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	6.55E-04
18	GO:0005310: dicarboxylic acid transmembrane transporter activity	6.55E-04
19	GO:0050734: hydroxycinnamoyltransferase activity	6.55E-04
20	GO:0015141: succinate transmembrane transporter activity	6.55E-04
21	GO:0015131: oxaloacetate transmembrane transporter activity	9.34E-04
22	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	1.24E-03
23	GO:0019104: DNA N-glycosylase activity	1.24E-03
24	GO:0004506: squalene monooxygenase activity	1.24E-03
25	GO:0043565: sequence-specific DNA binding	1.33E-03
26	GO:0010294: abscisic acid glucosyltransferase activity	1.57E-03
27	GO:0019139: cytokinin dehydrogenase activity	1.57E-03
28	GO:0004556: alpha-amylase activity	1.94E-03
29	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.94E-03
30	GO:0004332: fructose-bisphosphate aldolase activity	1.94E-03
31	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.94E-03
32	GO:0004620: phospholipase activity	2.74E-03
33	GO:0015140: malate transmembrane transporter activity	2.74E-03
34	GO:0015288: porin activity	3.17E-03
35	GO:0016209: antioxidant activity	3.17E-03
36	GO:0015020: glucuronosyltransferase activity	5.11E-03
37	GO:0047372: acylglycerol lipase activity	5.65E-03
38	GO:0015116: sulfate transmembrane transporter activity	6.20E-03
39	GO:0004022: alcohol dehydrogenase (NAD) activity	6.78E-03
40	GO:0015266: protein channel activity	6.78E-03
41	GO:0061630: ubiquitin protein ligase activity	6.92E-03
42	GO:0016740: transferase activity	7.26E-03
43	GO:0008083: growth factor activity	7.37E-03
44	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.37E-03
45	GO:0016874: ligase activity	9.09E-03
46	GO:0043130: ubiquitin binding	9.26E-03
47	GO:0003924: GTPase activity	1.06E-02
48	GO:0005249: voltage-gated potassium channel activity	1.43E-02
49	GO:0003713: transcription coactivator activity	1.50E-02
50	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.50E-02
51	GO:0046910: pectinesterase inhibitor activity	1.56E-02
52	GO:0008289: lipid binding	1.62E-02
53	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.89E-02
54	GO:0000156: phosphorelay response regulator activity	1.91E-02
55	GO:0003684: damaged DNA binding	2.00E-02
56	GO:0016791: phosphatase activity	2.00E-02
57	GO:0005200: structural constituent of cytoskeleton	2.09E-02
58	GO:0016597: amino acid binding	2.18E-02
59	GO:0008375: acetylglucosaminyltransferase activity	2.45E-02
60	GO:0008168: methyltransferase activity	2.50E-02
61	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.74E-02
62	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.94E-02
63	GO:0050660: flavin adenine dinucleotide binding	3.00E-02
64	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.04E-02
65	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.24E-02
66	GO:0003993: acid phosphatase activity	3.35E-02
67	GO:0004364: glutathione transferase activity	3.78E-02
68	GO:0005525: GTP binding	4.08E-02
69	GO:0005198: structural molecule activity	4.22E-02
70	GO:0003690: double-stranded DNA binding	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0034426: etioplast membrane	0.00E+00
2	GO:0031357: integral component of chloroplast inner membrane	4.01E-04
3	GO:0005652: nuclear lamina	6.55E-04
4	GO:0036513: Derlin-1 retrotranslocation complex	9.34E-04
5	GO:0008076: voltage-gated potassium channel complex	9.34E-04
6	GO:0009527: plastid outer membrane	1.24E-03
7	GO:0031305: integral component of mitochondrial inner membrane	3.17E-03
8	GO:0034399: nuclear periphery	3.17E-03
9	GO:0046930: pore complex	3.63E-03
10	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	3.63E-03
11	GO:0045298: tubulin complex	4.10E-03
12	GO:0005737: cytoplasm	7.20E-03
13	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.27E-02
14	GO:0031965: nuclear membrane	1.66E-02
15	GO:0005618: cell wall	1.70E-02
16	GO:0005615: extracellular space	1.88E-02
17	GO:0046658: anchored component of plasma membrane	2.22E-02
18	GO:0009707: chloroplast outer membrane	2.74E-02
19	GO:0031966: mitochondrial membrane	4.56E-02
20	GO:0005783: endoplasmic reticulum	4.85E-02