co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G62650

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009249: protein lipoylation	0.00E+00
2	GO:0009583: detection of light stimulus	0.00E+00
3	GO:0009106: lipoate metabolic process	0.00E+00
4	GO:0048856: anatomical structure development	0.00E+00
5	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
6	GO:0071000: response to magnetism	0.00E+00
7	GO:0046460: neutral lipid biosynthetic process	0.00E+00
8	GO:0016576: histone dephosphorylation	0.00E+00
9	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	6.25E-07
10	GO:0016126: sterol biosynthetic process	9.24E-05
11	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.10E-04
12	GO:0072387: flavin adenine dinucleotide metabolic process	1.10E-04
13	GO:0048438: floral whorl development	1.10E-04
14	GO:0010343: singlet oxygen-mediated programmed cell death	2.57E-04
15	GO:1901529: positive regulation of anion channel activity	2.57E-04
16	GO:0010617: circadian regulation of calcium ion oscillation	2.57E-04
17	GO:0099402: plant organ development	2.57E-04
18	GO:0035335: peptidyl-tyrosine dephosphorylation	2.57E-04
19	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	4.25E-04
20	GO:1902448: positive regulation of shade avoidance	4.25E-04
21	GO:1901672: positive regulation of systemic acquired resistance	4.25E-04
22	GO:0009150: purine ribonucleotide metabolic process	4.25E-04
23	GO:0071492: cellular response to UV-A	4.25E-04
24	GO:0045739: positive regulation of DNA repair	4.25E-04
25	GO:0010476: gibberellin mediated signaling pathway	4.25E-04
26	GO:0010325: raffinose family oligosaccharide biosynthetic process	4.25E-04
27	GO:1901332: negative regulation of lateral root development	6.10E-04
28	GO:0006882: cellular zinc ion homeostasis	6.10E-04
29	GO:0071486: cellular response to high light intensity	8.10E-04
30	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	8.10E-04
31	GO:0042274: ribosomal small subunit biogenesis	8.10E-04
32	GO:0031935: regulation of chromatin silencing	8.10E-04
33	GO:0009765: photosynthesis, light harvesting	8.10E-04
34	GO:1902347: response to strigolactone	8.10E-04
35	GO:0034613: cellular protein localization	8.10E-04
36	GO:1900864: mitochondrial RNA modification	8.10E-04
37	GO:0010117: photoprotection	1.02E-03
38	GO:0046283: anthocyanin-containing compound metabolic process	1.02E-03
39	GO:0009107: lipoate biosynthetic process	1.02E-03
40	GO:0006555: methionine metabolic process	1.25E-03
41	GO:0031053: primary miRNA processing	1.25E-03
42	GO:1901371: regulation of leaf morphogenesis	1.25E-03
43	GO:0007035: vacuolar acidification	1.25E-03
44	GO:0060918: auxin transport	1.25E-03
45	GO:0016070: RNA metabolic process	1.25E-03
46	GO:0010310: regulation of hydrogen peroxide metabolic process	1.49E-03
47	GO:0019509: L-methionine salvage from methylthioadenosine	1.49E-03
48	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.49E-03
49	GO:0034389: lipid particle organization	1.49E-03
50	GO:0010076: maintenance of floral meristem identity	1.49E-03
51	GO:0010016: shoot system morphogenesis	1.49E-03
52	GO:0048444: floral organ morphogenesis	1.49E-03
53	GO:0080111: DNA demethylation	1.75E-03
54	GO:0030026: cellular manganese ion homeostasis	1.75E-03
55	GO:0051510: regulation of unidimensional cell growth	1.75E-03
56	GO:0045292: mRNA cis splicing, via spliceosome	2.03E-03
57	GO:0010928: regulation of auxin mediated signaling pathway	2.03E-03
58	GO:0009704: de-etiolation	2.03E-03
59	GO:0010099: regulation of photomorphogenesis	2.32E-03
60	GO:0022900: electron transport chain	2.32E-03
61	GO:0098656: anion transmembrane transport	2.62E-03
62	GO:0048366: leaf development	2.62E-03
63	GO:0019432: triglyceride biosynthetic process	2.62E-03
64	GO:0009821: alkaloid biosynthetic process	2.62E-03
65	GO:0009056: catabolic process	2.62E-03
66	GO:0009638: phototropism	2.93E-03
67	GO:1900426: positive regulation of defense response to bacterium	2.93E-03
68	GO:0055062: phosphate ion homeostasis	3.25E-03
69	GO:0006816: calcium ion transport	3.59E-03
70	GO:0006790: sulfur compound metabolic process	3.93E-03
71	GO:0010582: floral meristem determinacy	3.93E-03
72	GO:0009767: photosynthetic electron transport chain	4.30E-03
73	GO:0009785: blue light signaling pathway	4.30E-03
74	GO:0010075: regulation of meristem growth	4.30E-03
75	GO:0009266: response to temperature stimulus	4.66E-03
76	GO:0000162: tryptophan biosynthetic process	5.44E-03
77	GO:0006071: glycerol metabolic process	5.44E-03
78	GO:2000377: regulation of reactive oxygen species metabolic process	5.84E-03
79	GO:0007017: microtubule-based process	6.25E-03
80	GO:0015991: ATP hydrolysis coupled proton transport	8.93E-03
81	GO:0010118: stomatal movement	8.93E-03
82	GO:0009958: positive gravitropism	9.41E-03
83	GO:0055114: oxidation-reduction process	9.44E-03
84	GO:0009646: response to absence of light	9.91E-03
85	GO:0042752: regulation of circadian rhythm	9.91E-03
86	GO:0009851: auxin biosynthetic process	1.04E-02
87	GO:0080156: mitochondrial mRNA modification	1.09E-02
88	GO:0007264: small GTPase mediated signal transduction	1.14E-02
89	GO:0071805: potassium ion transmembrane transport	1.30E-02
90	GO:0016579: protein deubiquitination	1.36E-02
91	GO:0048573: photoperiodism, flowering	1.59E-02
92	GO:0006950: response to stress	1.59E-02
93	GO:0018298: protein-chromophore linkage	1.71E-02
94	GO:0010218: response to far red light	1.83E-02
95	GO:0009910: negative regulation of flower development	1.89E-02
96	GO:0009631: cold acclimation	1.89E-02
97	GO:0009637: response to blue light	2.02E-02
98	GO:0009640: photomorphogenesis	2.42E-02
99	GO:0008283: cell proliferation	2.42E-02
100	GO:0010114: response to red light	2.42E-02
101	GO:0009644: response to high light intensity	2.56E-02
102	GO:0006260: DNA replication	2.77E-02
103	GO:0000165: MAPK cascade	2.77E-02
104	GO:0009585: red, far-red light phototransduction	2.99E-02
105	GO:0006417: regulation of translation	3.22E-02
106	GO:0048367: shoot system development	3.45E-02
107	GO:0009742: brassinosteroid mediated signaling pathway	4.01E-02
108	GO:0000398: mRNA splicing, via spliceosome	4.26E-02
109	GO:0009555: pollen development	4.33E-02
110	GO:0009611: response to wounding	4.42E-02
111	GO:0009058: biosynthetic process	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
2	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
3	GO:0000254: C-4 methylsterol oxidase activity	1.10E-08
4	GO:0004848: ureidoglycolate hydrolase activity	2.36E-06
5	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.10E-04
6	GO:0015085: calcium ion transmembrane transporter activity	1.10E-04
7	GO:0016415: octanoyltransferase activity	2.57E-04
8	GO:0017118: lipoyltransferase activity	2.57E-04
9	GO:0010331: gibberellin binding	2.57E-04
10	GO:0004180: carboxypeptidase activity	4.25E-04
11	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	4.25E-04
12	GO:0019003: GDP binding	4.25E-04
13	GO:0000900: translation repressor activity, nucleic acid binding	4.25E-04
14	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	4.25E-04
15	GO:0016491: oxidoreductase activity	5.25E-04
16	GO:0000339: RNA cap binding	6.10E-04
17	GO:0009882: blue light photoreceptor activity	6.10E-04
18	GO:0047627: adenylylsulfatase activity	6.10E-04
19	GO:0015369: calcium:proton antiporter activity	8.10E-04
20	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	8.10E-04
21	GO:0015368: calcium:cation antiporter activity	8.10E-04
22	GO:0004834: tryptophan synthase activity	8.10E-04
23	GO:0015271: outward rectifier potassium channel activity	1.25E-03
24	GO:0004144: diacylglycerol O-acyltransferase activity	1.49E-03
25	GO:0005267: potassium channel activity	2.32E-03
26	GO:0015078: hydrogen ion transmembrane transporter activity	2.32E-03
27	GO:0071949: FAD binding	2.62E-03
28	GO:0016844: strictosidine synthase activity	2.93E-03
29	GO:0004713: protein tyrosine kinase activity	3.25E-03
30	GO:0004860: protein kinase inhibitor activity	3.59E-03
31	GO:0004129: cytochrome-c oxidase activity	3.59E-03
32	GO:0046961: proton-transporting ATPase activity, rotational mechanism	3.59E-03
33	GO:0005315: inorganic phosphate transmembrane transporter activity	4.30E-03
34	GO:0031072: heat shock protein binding	4.30E-03
35	GO:0016787: hydrolase activity	5.07E-03
36	GO:0003887: DNA-directed DNA polymerase activity	5.44E-03
37	GO:0008514: organic anion transmembrane transporter activity	8.00E-03
38	GO:0008080: N-acetyltransferase activity	9.41E-03
39	GO:0003713: transcription coactivator activity	9.41E-03
40	GO:0048038: quinone binding	1.09E-02
41	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.09E-02
42	GO:0016168: chlorophyll binding	1.47E-02
43	GO:0008236: serine-type peptidase activity	1.65E-02
44	GO:0050897: cobalt ion binding	1.89E-02
45	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.15E-02
46	GO:0005506: iron ion binding	2.27E-02
47	GO:0051537: 2 iron, 2 sulfur cluster binding	2.56E-02
48	GO:0051287: NAD binding	2.77E-02
49	GO:0003777: microtubule motor activity	3.22E-02
50	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.45E-02
51	GO:0005515: protein binding	3.81E-02
52	GO:0051082: unfolded protein binding	3.85E-02
53	GO:0004386: helicase activity	4.09E-02
54	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.60E-02
55	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	8.55E-06
3	GO:0005845: mRNA cap binding complex	1.10E-04
4	GO:0005846: nuclear cap binding complex	2.57E-04
5	GO:0016605: PML body	4.25E-04
6	GO:0030286: dynein complex	8.10E-04
7	GO:0033179: proton-transporting V-type ATPase, V0 domain	8.10E-04
8	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	1.02E-03
9	GO:0000123: histone acetyltransferase complex	1.75E-03
10	GO:0005811: lipid particle	2.32E-03
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.62E-03
12	GO:0016604: nuclear body	2.93E-03
13	GO:0005875: microtubule associated complex	5.44E-03
14	GO:0009535: chloroplast thylakoid membrane	5.48E-03
15	GO:0009705: plant-type vacuole membrane	8.60E-03
16	GO:0009523: photosystem II	1.04E-02
17	GO:0005789: endoplasmic reticulum membrane	1.08E-02
18	GO:0005737: cytoplasm	1.12E-02
19	GO:0005819: spindle	2.15E-02
20	GO:0031966: mitochondrial membrane	2.85E-02