GO Enrichment Analysis of Co-expressed Genes with
AT3G62460
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 3 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 4 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 5 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 6 | GO:0006412: translation | 3.03E-51 |
| 7 | GO:0042254: ribosome biogenesis | 1.34E-11 |
| 8 | GO:0006626: protein targeting to mitochondrion | 9.50E-08 |
| 9 | GO:0010162: seed dormancy process | 3.76E-06 |
| 10 | GO:0000027: ribosomal large subunit assembly | 1.73E-05 |
| 11 | GO:0006364: rRNA processing | 4.57E-05 |
| 12 | GO:0031120: snRNA pseudouridine synthesis | 1.30E-04 |
| 13 | GO:0031118: rRNA pseudouridine synthesis | 1.30E-04 |
| 14 | GO:0030490: maturation of SSU-rRNA | 1.30E-04 |
| 15 | GO:0000494: box C/D snoRNA 3'-end processing | 1.30E-04 |
| 16 | GO:0043985: histone H4-R3 methylation | 1.30E-04 |
| 17 | GO:1990258: histone glutamine methylation | 1.30E-04 |
| 18 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 2.99E-04 |
| 19 | GO:0048569: post-embryonic animal organ development | 2.99E-04 |
| 20 | GO:0009967: positive regulation of signal transduction | 2.99E-04 |
| 21 | GO:0009944: polarity specification of adaxial/abaxial axis | 4.55E-04 |
| 22 | GO:0030150: protein import into mitochondrial matrix | 4.55E-04 |
| 23 | GO:0045039: protein import into mitochondrial inner membrane | 4.92E-04 |
| 24 | GO:0009294: DNA mediated transformation | 6.54E-04 |
| 25 | GO:0006986: response to unfolded protein | 7.04E-04 |
| 26 | GO:0051085: chaperone mediated protein folding requiring cofactor | 7.04E-04 |
| 27 | GO:0006164: purine nucleotide biosynthetic process | 7.04E-04 |
| 28 | GO:0009855: determination of bilateral symmetry | 7.04E-04 |
| 29 | GO:0010197: polar nucleus fusion | 8.87E-04 |
| 30 | GO:0042273: ribosomal large subunit biogenesis | 9.34E-04 |
| 31 | GO:0031167: rRNA methylation | 1.18E-03 |
| 32 | GO:0000470: maturation of LSU-rRNA | 1.45E-03 |
| 33 | GO:0000741: karyogamy | 1.45E-03 |
| 34 | GO:0006413: translational initiation | 1.49E-03 |
| 35 | GO:0009955: adaxial/abaxial pattern specification | 1.73E-03 |
| 36 | GO:0080186: developmental vegetative growth | 2.04E-03 |
| 37 | GO:0000028: ribosomal small subunit assembly | 2.36E-03 |
| 38 | GO:0009735: response to cytokinin | 2.39E-03 |
| 39 | GO:0001558: regulation of cell growth | 2.69E-03 |
| 40 | GO:0022900: electron transport chain | 2.69E-03 |
| 41 | GO:0001510: RNA methylation | 2.69E-03 |
| 42 | GO:0006189: 'de novo' IMP biosynthetic process | 3.04E-03 |
| 43 | GO:0007338: single fertilization | 3.04E-03 |
| 44 | GO:0048507: meristem development | 3.04E-03 |
| 45 | GO:0030422: production of siRNA involved in RNA interference | 3.79E-03 |
| 46 | GO:0006913: nucleocytoplasmic transport | 4.18E-03 |
| 47 | GO:0006820: anion transport | 4.58E-03 |
| 48 | GO:0006414: translational elongation | 5.03E-03 |
| 49 | GO:0016569: covalent chromatin modification | 5.86E-03 |
| 50 | GO:0010030: positive regulation of seed germination | 5.88E-03 |
| 51 | GO:0009553: embryo sac development | 6.03E-03 |
| 52 | GO:0051302: regulation of cell division | 7.30E-03 |
| 53 | GO:0015992: proton transport | 7.79E-03 |
| 54 | GO:0007005: mitochondrion organization | 8.30E-03 |
| 55 | GO:0071215: cellular response to abscisic acid stimulus | 8.82E-03 |
| 56 | GO:0008033: tRNA processing | 1.04E-02 |
| 57 | GO:0000413: protein peptidyl-prolyl isomerization | 1.04E-02 |
| 58 | GO:0009960: endosperm development | 1.10E-02 |
| 59 | GO:0032502: developmental process | 1.34E-02 |
| 60 | GO:0009567: double fertilization forming a zygote and endosperm | 1.46E-02 |
| 61 | GO:0006457: protein folding | 1.75E-02 |
| 62 | GO:0016049: cell growth | 1.93E-02 |
| 63 | GO:0006811: ion transport | 2.15E-02 |
| 64 | GO:0048527: lateral root development | 2.22E-02 |
| 65 | GO:0006099: tricarboxylic acid cycle | 2.45E-02 |
| 66 | GO:0000154: rRNA modification | 3.08E-02 |
| 67 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 3.25E-02 |
| 68 | GO:0010224: response to UV-B | 3.60E-02 |
| 69 | GO:0048367: shoot system development | 4.04E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 2 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 3 | GO:0003735: structural constituent of ribosome | 1.27E-62 |
| 4 | GO:0019843: rRNA binding | 4.28E-10 |
| 5 | GO:0003729: mRNA binding | 4.53E-10 |
| 6 | GO:0003723: RNA binding | 2.27E-09 |
| 7 | GO:0004407: histone deacetylase activity | 1.73E-05 |
| 8 | GO:0030515: snoRNA binding | 6.54E-05 |
| 9 | GO:0048037: cofactor binding | 1.30E-04 |
| 10 | GO:0004128: cytochrome-b5 reductase activity, acting on NAD(P)H | 1.30E-04 |
| 11 | GO:1990259: histone-glutamine methyltransferase activity | 1.30E-04 |
| 12 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.86E-04 |
| 13 | GO:0003746: translation elongation factor activity | 2.58E-04 |
| 14 | GO:0043141: ATP-dependent 5'-3' DNA helicase activity | 2.99E-04 |
| 15 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 2.99E-04 |
| 16 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 2.99E-04 |
| 17 | GO:0005078: MAP-kinase scaffold activity | 2.99E-04 |
| 18 | GO:0008649: rRNA methyltransferase activity | 4.92E-04 |
| 19 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 4.92E-04 |
| 20 | GO:0051087: chaperone binding | 5.01E-04 |
| 21 | GO:0000166: nucleotide binding | 5.78E-04 |
| 22 | GO:0003743: translation initiation factor activity | 1.98E-03 |
| 23 | GO:0008235: metalloexopeptidase activity | 2.04E-03 |
| 24 | GO:0015288: porin activity | 2.36E-03 |
| 25 | GO:0008135: translation factor activity, RNA binding | 2.69E-03 |
| 26 | GO:0008308: voltage-gated anion channel activity | 2.69E-03 |
| 27 | GO:0001055: RNA polymerase II activity | 3.41E-03 |
| 28 | GO:0001054: RNA polymerase I activity | 4.18E-03 |
| 29 | GO:0044183: protein binding involved in protein folding | 4.18E-03 |
| 30 | GO:0001056: RNA polymerase III activity | 4.58E-03 |
| 31 | GO:0000049: tRNA binding | 4.58E-03 |
| 32 | GO:0005507: copper ion binding | 4.69E-03 |
| 33 | GO:0009982: pseudouridine synthase activity | 5.00E-03 |
| 34 | GO:0015266: protein channel activity | 5.00E-03 |
| 35 | GO:0051082: unfolded protein binding | 6.22E-03 |
| 36 | GO:0050897: cobalt ion binding | 2.22E-02 |
| 37 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.45E-02 |
| 38 | GO:0003924: GTPase activity | 3.06E-02 |
| 39 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.17E-02 |
| 40 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.51E-02 |
| 41 | GO:0008026: ATP-dependent helicase activity | 4.70E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 2 | GO:0022626: cytosolic ribosome | 1.33E-35 |
| 3 | GO:0005840: ribosome | 3.05E-34 |
| 4 | GO:0022625: cytosolic large ribosomal subunit | 4.89E-33 |
| 5 | GO:0022627: cytosolic small ribosomal subunit | 2.65E-31 |
| 6 | GO:0005730: nucleolus | 2.87E-28 |
| 7 | GO:0005829: cytosol | 3.02E-12 |
| 8 | GO:0009506: plasmodesma | 3.32E-11 |
| 9 | GO:0015934: large ribosomal subunit | 8.28E-09 |
| 10 | GO:0005737: cytoplasm | 1.61E-08 |
| 11 | GO:0005773: vacuole | 7.22E-07 |
| 12 | GO:0005774: vacuolar membrane | 2.66E-05 |
| 13 | GO:0031428: box C/D snoRNP complex | 3.44E-05 |
| 14 | GO:0016020: membrane | 1.29E-04 |
| 15 | GO:0032040: small-subunit processome | 2.53E-04 |
| 16 | GO:0005758: mitochondrial intermembrane space | 4.55E-04 |
| 17 | GO:0005741: mitochondrial outer membrane | 5.50E-04 |
| 18 | GO:0031429: box H/ACA snoRNP complex | 7.04E-04 |
| 19 | GO:0005834: heterotrimeric G-protein complex | 7.09E-04 |
| 20 | GO:0005618: cell wall | 7.10E-04 |
| 21 | GO:0005743: mitochondrial inner membrane | 1.03E-03 |
| 22 | GO:0009507: chloroplast | 1.32E-03 |
| 23 | GO:0005759: mitochondrial matrix | 1.44E-03 |
| 24 | GO:0016272: prefoldin complex | 1.73E-03 |
| 25 | GO:0046930: pore complex | 2.69E-03 |
| 26 | GO:0005742: mitochondrial outer membrane translocase complex | 2.69E-03 |
| 27 | GO:0005736: DNA-directed RNA polymerase I complex | 3.04E-03 |
| 28 | GO:0005666: DNA-directed RNA polymerase III complex | 3.41E-03 |
| 29 | GO:0015030: Cajal body | 3.41E-03 |
| 30 | GO:0000418: DNA-directed RNA polymerase IV complex | 3.79E-03 |
| 31 | GO:0005852: eukaryotic translation initiation factor 3 complex | 4.18E-03 |
| 32 | GO:0005665: DNA-directed RNA polymerase II, core complex | 4.58E-03 |
| 33 | GO:0005747: mitochondrial respiratory chain complex I | 5.34E-03 |
| 34 | GO:0000419: DNA-directed RNA polymerase V complex | 6.34E-03 |
| 35 | GO:0015935: small ribosomal subunit | 7.79E-03 |
| 36 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 9.35E-03 |
| 37 | GO:0016592: mediator complex | 1.34E-02 |
| 38 | GO:0030529: intracellular ribonucleoprotein complex | 1.66E-02 |
| 39 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.83E-02 |
| 40 | GO:0005622: intracellular | 2.60E-02 |