co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G62410

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009249: protein lipoylation	0.00E+00
2	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
3	GO:0009583: detection of light stimulus	0.00E+00
4	GO:0009106: lipoate metabolic process	0.00E+00
5	GO:0071000: response to magnetism	0.00E+00
6	GO:0046460: neutral lipid biosynthetic process	0.00E+00
7	GO:0009658: chloroplast organization	6.72E-07
8	GO:0010275: NAD(P)H dehydrogenase complex assembly	3.47E-06
9	GO:0080005: photosystem stoichiometry adjustment	3.47E-06
10	GO:0009767: photosynthetic electron transport chain	4.47E-05
11	GO:0009902: chloroplast relocation	5.05E-05
12	GO:0009637: response to blue light	1.16E-04
13	GO:0010190: cytochrome b6f complex assembly	1.17E-04
14	GO:0071806: protein transmembrane transport	2.75E-04
15	GO:0034971: histone H3-R17 methylation	2.75E-04
16	GO:0072387: flavin adenine dinucleotide metabolic process	2.75E-04
17	GO:0042371: vitamin K biosynthetic process	2.75E-04
18	GO:0071461: cellular response to redox state	2.75E-04
19	GO:0034970: histone H3-R2 methylation	2.75E-04
20	GO:0010362: negative regulation of anion channel activity by blue light	2.75E-04
21	GO:0034972: histone H3-R26 methylation	2.75E-04
22	GO:1902265: abscisic acid homeostasis	2.75E-04
23	GO:0032544: plastid translation	3.27E-04
24	GO:0071482: cellular response to light stimulus	3.27E-04
25	GO:0009638: phototropism	4.67E-04
26	GO:0009098: leucine biosynthetic process	4.67E-04
27	GO:0099402: plant organ development	6.04E-04
28	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	6.04E-04
29	GO:0010343: singlet oxygen-mediated programmed cell death	6.04E-04
30	GO:1901529: positive regulation of anion channel activity	6.04E-04
31	GO:0048255: mRNA stabilization	6.04E-04
32	GO:0010617: circadian regulation of calcium ion oscillation	6.04E-04
33	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	6.04E-04
34	GO:0006352: DNA-templated transcription, initiation	6.30E-04
35	GO:0045037: protein import into chloroplast stroma	7.20E-04
36	GO:0018298: protein-chromophore linkage	7.45E-04
37	GO:0009150: purine ribonucleotide metabolic process	9.79E-04
38	GO:0006696: ergosterol biosynthetic process	9.79E-04
39	GO:0031022: nuclear migration along microfilament	9.79E-04
40	GO:1902448: positive regulation of shade avoidance	9.79E-04
41	GO:1901672: positive regulation of systemic acquired resistance	9.79E-04
42	GO:0090351: seedling development	1.02E-03
43	GO:2001141: regulation of RNA biosynthetic process	1.40E-03
44	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.40E-03
45	GO:0090307: mitotic spindle assembly	1.40E-03
46	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	1.40E-03
47	GO:0033014: tetrapyrrole biosynthetic process	1.40E-03
48	GO:1901332: negative regulation of lateral root development	1.40E-03
49	GO:0009644: response to high light intensity	1.51E-03
50	GO:1902347: response to strigolactone	1.87E-03
51	GO:0042274: ribosomal small subunit biogenesis	1.87E-03
52	GO:0031122: cytoplasmic microtubule organization	1.87E-03
53	GO:0071483: cellular response to blue light	1.87E-03
54	GO:0016117: carotenoid biosynthetic process	2.13E-03
55	GO:0010118: stomatal movement	2.30E-03
56	GO:0045038: protein import into chloroplast thylakoid membrane	2.39E-03
57	GO:0035434: copper ion transmembrane transport	2.39E-03
58	GO:0009107: lipoate biosynthetic process	2.39E-03
59	GO:0016123: xanthophyll biosynthetic process	2.39E-03
60	GO:0016120: carotene biosynthetic process	2.39E-03
61	GO:0010117: photoprotection	2.39E-03
62	GO:0046283: anthocyanin-containing compound metabolic process	2.39E-03
63	GO:0009643: photosynthetic acclimation	2.95E-03
64	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.95E-03
65	GO:1901371: regulation of leaf morphogenesis	2.95E-03
66	GO:0000741: karyogamy	2.95E-03
67	GO:0060918: auxin transport	2.95E-03
68	GO:0009903: chloroplast avoidance movement	3.55E-03
69	GO:0010019: chloroplast-nucleus signaling pathway	3.55E-03
70	GO:0010310: regulation of hydrogen peroxide metabolic process	3.55E-03
71	GO:0015977: carbon fixation	3.55E-03
72	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.55E-03
73	GO:0034389: lipid particle organization	3.55E-03
74	GO:0017148: negative regulation of translation	3.55E-03
75	GO:0051510: regulation of unidimensional cell growth	4.19E-03
76	GO:0009772: photosynthetic electron transport in photosystem II	4.19E-03
77	GO:1900056: negative regulation of leaf senescence	4.19E-03
78	GO:0009704: de-etiolation	4.86E-03
79	GO:0000105: histidine biosynthetic process	4.86E-03
80	GO:0048564: photosystem I assembly	4.86E-03
81	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.86E-03
82	GO:0042255: ribosome assembly	4.86E-03
83	GO:0006353: DNA-templated transcription, termination	4.86E-03
84	GO:0006605: protein targeting	4.86E-03
85	GO:0022900: electron transport chain	5.57E-03
86	GO:0007623: circadian rhythm	6.29E-03
87	GO:0006783: heme biosynthetic process	6.31E-03
88	GO:0019432: triglyceride biosynthetic process	6.31E-03
89	GO:0009821: alkaloid biosynthetic process	6.31E-03
90	GO:0010218: response to far red light	6.35E-03
91	GO:1900426: positive regulation of defense response to bacterium	7.09E-03
92	GO:0006779: porphyrin-containing compound biosynthetic process	7.09E-03
93	GO:0010380: regulation of chlorophyll biosynthetic process	7.09E-03
94	GO:0045036: protein targeting to chloroplast	7.90E-03
95	GO:0051555: flavonol biosynthetic process	7.90E-03
96	GO:0009773: photosynthetic electron transport in photosystem I	8.74E-03
97	GO:0043085: positive regulation of catalytic activity	8.74E-03
98	GO:0010114: response to red light	9.42E-03
99	GO:0009744: response to sucrose	9.42E-03
100	GO:0006790: sulfur compound metabolic process	9.61E-03
101	GO:0010075: regulation of meristem growth	1.05E-02
102	GO:0009725: response to hormone	1.05E-02
103	GO:0009785: blue light signaling pathway	1.05E-02
104	GO:0030048: actin filament-based movement	1.05E-02
105	GO:0019253: reductive pentose-phosphate cycle	1.14E-02
106	GO:0010207: photosystem II assembly	1.14E-02
107	GO:0006071: glycerol metabolic process	1.34E-02
108	GO:0009416: response to light stimulus	1.39E-02
109	GO:0006289: nucleotide-excision repair	1.44E-02
110	GO:2000377: regulation of reactive oxygen species metabolic process	1.44E-02
111	GO:0006825: copper ion transport	1.55E-02
112	GO:0007017: microtubule-based process	1.55E-02
113	GO:0046777: protein autophosphorylation	1.57E-02
114	GO:0016998: cell wall macromolecule catabolic process	1.65E-02
115	GO:0015979: photosynthesis	1.71E-02
116	GO:0080092: regulation of pollen tube growth	1.76E-02
117	GO:0016226: iron-sulfur cluster assembly	1.76E-02
118	GO:0008033: tRNA processing	2.23E-02
119	GO:0010197: polar nucleus fusion	2.35E-02
120	GO:0055114: oxidation-reduction process	2.36E-02
121	GO:0015986: ATP synthesis coupled proton transport	2.47E-02
122	GO:0042752: regulation of circadian rhythm	2.47E-02
123	GO:0009646: response to absence of light	2.47E-02
124	GO:0006810: transport	2.49E-02
125	GO:0009791: post-embryonic development	2.60E-02
126	GO:0032502: developmental process	2.86E-02
127	GO:0019761: glucosinolate biosynthetic process	2.86E-02
128	GO:0030163: protein catabolic process	2.99E-02
129	GO:0009451: RNA modification	3.22E-02
130	GO:0071805: potassium ion transmembrane transport	3.27E-02
131	GO:0010228: vegetative to reproductive phase transition of meristem	3.29E-02
132	GO:0016126: sterol biosynthetic process	3.55E-02
133	GO:0010029: regulation of seed germination	3.69E-02
134	GO:0009816: defense response to bacterium, incompatible interaction	3.69E-02
135	GO:0015995: chlorophyll biosynthetic process	3.99E-02
136	GO:0009735: response to cytokinin	4.30E-02
137	GO:0000160: phosphorelay signal transduction system	4.44E-02
138	GO:0006811: ion transport	4.59E-02
139	GO:0010043: response to zinc ion	4.75E-02
140	GO:0007568: aging	4.75E-02
141	GO:0009910: negative regulation of flower development	4.75E-02
142	GO:0042254: ribosome biogenesis	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0045436: lycopene beta cyclase activity	0.00E+00
5	GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity	0.00E+00
6	GO:0046905: phytoene synthase activity	0.00E+00
7	GO:0003862: 3-isopropylmalate dehydrogenase activity	3.47E-06
8	GO:0004848: ureidoglycolate hydrolase activity	1.24E-05
9	GO:0009882: blue light photoreceptor activity	2.80E-05
10	GO:0016491: oxidoreductase activity	4.27E-05
11	GO:0001053: plastid sigma factor activity	5.05E-05
12	GO:0016987: sigma factor activity	5.05E-05
13	GO:0030941: chloroplast targeting sequence binding	2.75E-04
14	GO:0046906: tetrapyrrole binding	2.75E-04
15	GO:0004325: ferrochelatase activity	2.75E-04
16	GO:0051996: squalene synthase activity	2.75E-04
17	GO:0004424: imidazoleglycerol-phosphate dehydratase activity	2.75E-04
18	GO:0048038: quinone binding	3.29E-04
19	GO:0071949: FAD binding	3.94E-04
20	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.04E-04
21	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	6.04E-04
22	GO:0017118: lipoyltransferase activity	6.04E-04
23	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	6.04E-04
24	GO:0016415: octanoyltransferase activity	6.04E-04
25	GO:0004046: aminoacylase activity	6.04E-04
26	GO:0035241: protein-arginine omega-N monomethyltransferase activity	6.04E-04
27	GO:0008469: histone-arginine N-methyltransferase activity	9.79E-04
28	GO:0004180: carboxypeptidase activity	9.79E-04
29	GO:0032947: protein complex scaffold	9.79E-04
30	GO:0047627: adenylylsulfatase activity	1.40E-03
31	GO:0043023: ribosomal large subunit binding	1.40E-03
32	GO:0016984: ribulose-bisphosphate carboxylase activity	1.40E-03
33	GO:0000254: C-4 methylsterol oxidase activity	1.40E-03
34	GO:0016851: magnesium chelatase activity	1.40E-03
35	GO:0004176: ATP-dependent peptidase activity	1.52E-03
36	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.87E-03
37	GO:0051861: glycolipid binding	1.87E-03
38	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.87E-03
39	GO:0043015: gamma-tubulin binding	1.87E-03
40	GO:0051011: microtubule minus-end binding	2.39E-03
41	GO:0010181: FMN binding	2.67E-03
42	GO:0000293: ferric-chelate reductase activity	2.95E-03
43	GO:0015631: tubulin binding	3.55E-03
44	GO:0004144: diacylglycerol O-acyltransferase activity	3.55E-03
45	GO:0008237: metallopeptidase activity	3.93E-03
46	GO:0019843: rRNA binding	4.17E-03
47	GO:0019899: enzyme binding	4.19E-03
48	GO:0005375: copper ion transmembrane transporter activity	5.57E-03
49	GO:0004222: metalloendopeptidase activity	6.35E-03
50	GO:0016844: strictosidine synthase activity	7.09E-03
51	GO:0042802: identical protein binding	8.53E-03
52	GO:0005089: Rho guanyl-nucleotide exchange factor activity	8.74E-03
53	GO:0051537: 2 iron, 2 sulfur cluster binding	1.02E-02
54	GO:0031072: heat shock protein binding	1.05E-02
55	GO:0000155: phosphorelay sensor kinase activity	1.05E-02
56	GO:0051287: NAD binding	1.14E-02
57	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.27E-02
58	GO:0003690: double-stranded DNA binding	1.32E-02
59	GO:0003887: DNA-directed DNA polymerase activity	1.34E-02
60	GO:0051536: iron-sulfur cluster binding	1.44E-02
61	GO:0015079: potassium ion transmembrane transporter activity	1.55E-02
62	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.56E-02
63	GO:0022891: substrate-specific transmembrane transporter activity	1.88E-02
64	GO:0003727: single-stranded RNA binding	1.99E-02
65	GO:0003674: molecular_function	2.24E-02
66	GO:0008080: N-acetyltransferase activity	2.35E-02
67	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.35E-02
68	GO:0004872: receptor activity	2.60E-02
69	GO:0008565: protein transporter activity	2.73E-02
70	GO:0004518: nuclease activity	2.86E-02
71	GO:0005200: structural constituent of cytoskeleton	3.27E-02
72	GO:0008483: transaminase activity	3.27E-02
73	GO:0016597: amino acid binding	3.41E-02
74	GO:0008194: UDP-glycosyltransferase activity	3.51E-02
75	GO:0016168: chlorophyll binding	3.69E-02
76	GO:0008236: serine-type peptidase activity	4.14E-02
77	GO:0000287: magnesium ion binding	4.75E-02
78	GO:0016788: hydrolase activity, acting on ester bonds	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.28E-38
2	GO:0009535: chloroplast thylakoid membrane	8.73E-23
3	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.69E-07
4	GO:0009570: chloroplast stroma	3.22E-07
5	GO:0009536: plastid	5.47E-06
6	GO:0009941: chloroplast envelope	2.37E-05
7	GO:0009706: chloroplast inner membrane	6.66E-05
8	GO:0031969: chloroplast membrane	1.30E-04
9	GO:0009579: thylakoid	3.72E-04
10	GO:0080085: signal recognition particle, chloroplast targeting	6.04E-04
11	GO:0008274: gamma-tubulin ring complex	6.04E-04
12	GO:0005623: cell	7.69E-04
13	GO:0016605: PML body	9.79E-04
14	GO:0009528: plastid inner membrane	9.79E-04
15	GO:0009573: chloroplast ribulose bisphosphate carboxylase complex	9.79E-04
16	GO:0042651: thylakoid membrane	1.38E-03
17	GO:0000923: equatorial microtubule organizing center	1.40E-03
18	GO:0030286: dynein complex	1.87E-03
19	GO:0055035: plastid thylakoid membrane	2.39E-03
20	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.95E-03
21	GO:0009840: chloroplastic endopeptidase Clp complex	3.55E-03
22	GO:0010319: stromule	3.93E-03
23	GO:0031359: integral component of chloroplast outer membrane	4.19E-03
24	GO:0009534: chloroplast thylakoid	5.28E-03
25	GO:0005811: lipid particle	5.57E-03
26	GO:0009539: photosystem II reaction center	5.57E-03
27	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.57E-03
28	GO:0009707: chloroplast outer membrane	5.76E-03
29	GO:0000922: spindle pole	6.31E-03
30	GO:0016604: nuclear body	7.09E-03
31	GO:0016324: apical plasma membrane	7.90E-03
32	GO:0005875: microtubule associated complex	1.34E-02
33	GO:0009654: photosystem II oxygen evolving complex	1.55E-02
34	GO:0015935: small ribosomal subunit	1.65E-02
35	GO:0010287: plastoglobule	2.16E-02
36	GO:0009543: chloroplast thylakoid lumen	2.28E-02
37	GO:0009523: photosystem II	2.60E-02
38	GO:0005622: intracellular	3.27E-02