Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G62370

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0045747: positive regulation of Notch signaling pathway0.00E+00
2GO:0071000: response to magnetism0.00E+00
3GO:0032928: regulation of superoxide anion generation0.00E+00
4GO:1904215: regulation of protein import into chloroplast stroma0.00E+00
5GO:0006720: isoprenoid metabolic process0.00E+00
6GO:0009583: detection of light stimulus0.00E+00
7GO:0046294: formaldehyde catabolic process0.00E+00
8GO:0016093: polyprenol metabolic process0.00E+00
9GO:0036172: thiamine salvage0.00E+00
10GO:0010117: photoprotection6.77E-06
11GO:0009229: thiamine diphosphate biosynthetic process6.77E-06
12GO:0009228: thiamine biosynthetic process1.04E-05
13GO:0072387: flavin adenine dinucleotide metabolic process6.26E-05
14GO:0016487: farnesol metabolic process6.26E-05
15GO:0010617: circadian regulation of calcium ion oscillation1.52E-04
16GO:0099402: plant organ development1.52E-04
17GO:0019441: tryptophan catabolic process to kynurenine1.52E-04
18GO:0006996: organelle organization1.52E-04
19GO:0016122: xanthophyll metabolic process1.52E-04
20GO:0010343: singlet oxygen-mediated programmed cell death1.52E-04
21GO:1901529: positive regulation of anion channel activity1.52E-04
22GO:2000377: regulation of reactive oxygen species metabolic process1.69E-04
23GO:0043617: cellular response to sucrose starvation2.57E-04
24GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid2.57E-04
25GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation2.57E-04
26GO:1902448: positive regulation of shade avoidance2.57E-04
27GO:0006591: ornithine metabolic process2.57E-04
28GO:1901672: positive regulation of systemic acquired resistance2.57E-04
29GO:1901332: negative regulation of lateral root development3.73E-04
30GO:0009646: response to absence of light3.73E-04
31GO:1902347: response to strigolactone4.99E-04
32GO:0034613: cellular protein localization4.99E-04
33GO:0006221: pyrimidine nucleotide biosynthetic process4.99E-04
34GO:0006749: glutathione metabolic process4.99E-04
35GO:0046283: anthocyanin-containing compound metabolic process6.32E-04
36GO:0060918: auxin transport7.73E-04
37GO:0006014: D-ribose metabolic process7.73E-04
38GO:0016070: RNA metabolic process7.73E-04
39GO:0031053: primary miRNA processing7.73E-04
40GO:1901371: regulation of leaf morphogenesis7.73E-04
41GO:0010310: regulation of hydrogen peroxide metabolic process9.20E-04
42GO:0010244: response to low fluence blue light stimulus by blue low-fluence system9.20E-04
43GO:0006120: mitochondrial electron transport, NADH to ubiquinone9.20E-04
44GO:0051510: regulation of unidimensional cell growth1.07E-03
45GO:0000028: ribosomal small subunit assembly1.24E-03
46GO:0045292: mRNA cis splicing, via spliceosome1.24E-03
47GO:0006526: arginine biosynthetic process1.41E-03
48GO:0098656: anion transmembrane transport1.58E-03
49GO:1900426: positive regulation of defense response to bacterium1.77E-03
50GO:0009638: phototropism1.77E-03
51GO:0009688: abscisic acid biosynthetic process1.96E-03
52GO:0045037: protein import into chloroplast stroma2.37E-03
53GO:0010075: regulation of meristem growth2.58E-03
54GO:0009785: blue light signaling pathway2.58E-03
55GO:0048440: carpel development2.80E-03
56GO:0000162: tryptophan biosynthetic process3.26E-03
57GO:0034976: response to endoplasmic reticulum stress3.26E-03
58GO:0006487: protein N-linked glycosylation3.49E-03
59GO:0010431: seed maturation3.98E-03
60GO:0010118: stomatal movement5.31E-03
61GO:0006520: cellular amino acid metabolic process5.59E-03
62GO:0042752: regulation of circadian rhythm5.88E-03
63GO:0008654: phospholipid biosynthetic process6.17E-03
64GO:0009851: auxin biosynthetic process6.17E-03
65GO:0016310: phosphorylation7.01E-03
66GO:0006888: ER to Golgi vesicle-mediated transport9.36E-03
67GO:0018298: protein-chromophore linkage1.01E-02
68GO:0009407: toxin catabolic process1.08E-02
69GO:0010218: response to far red light1.08E-02
70GO:0010043: response to zinc ion1.11E-02
71GO:0009637: response to blue light1.19E-02
72GO:0009853: photorespiration1.19E-02
73GO:0008152: metabolic process1.27E-02
74GO:0010114: response to red light1.42E-02
75GO:0009744: response to sucrose1.42E-02
76GO:0009640: photomorphogenesis1.42E-02
77GO:0009644: response to high light intensity1.50E-02
78GO:0009636: response to toxic substance1.54E-02
79GO:0006486: protein glycosylation1.75E-02
80GO:0009416: response to light stimulus2.05E-02
81GO:0045893: positive regulation of transcription, DNA-templated2.35E-02
82GO:0000398: mRNA splicing, via spliceosome2.50E-02
83GO:0009058: biosynthetic process2.75E-02
84GO:0006633: fatty acid biosynthetic process3.11E-02
85GO:0007623: circadian rhythm3.33E-02
86GO:0010150: leaf senescence3.33E-02
87GO:0006470: protein dephosphorylation3.66E-02
88GO:0010468: regulation of gene expression3.77E-02
89GO:0009658: chloroplast organization4.54E-02
90GO:0007049: cell cycle4.91E-02
RankGO TermAdjusted P value
1GO:0008902: hydroxymethylpyrimidine kinase activity0.00E+00
2GO:0003826: alpha-ketoacid dehydrogenase activity0.00E+00
3GO:0018738: S-formylglutathione hydrolase activity0.00E+00
4GO:0008972: phosphomethylpyrimidine kinase activity0.00E+00
5GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity0.00E+00
6GO:0004147: dihydrolipoamide branched chain acyltransferase activity0.00E+00
7GO:0004417: hydroxyethylthiazole kinase activity0.00E+00
8GO:0043754: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity0.00E+00
9GO:0052670: geraniol kinase activity0.00E+00
10GO:0052668: farnesol kinase activity0.00E+00
11GO:0004585: ornithine carbamoyltransferase activity0.00E+00
12GO:0052671: geranylgeraniol kinase activity0.00E+00
13GO:0004789: thiamine-phosphate diphosphorylase activity0.00E+00
14GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity2.09E-06
15GO:0019707: protein-cysteine S-acyltransferase activity6.26E-05
16GO:0033984: indole-3-glycerol-phosphate lyase activity6.26E-05
17GO:0004061: arylformamidase activity1.52E-04
18GO:0015929: hexosaminidase activity1.52E-04
19GO:0004563: beta-N-acetylhexosaminidase activity1.52E-04
20GO:0016743: carboxyl- or carbamoyltransferase activity1.52E-04
21GO:0004848: ureidoglycolate hydrolase activity2.57E-04
22GO:0000339: RNA cap binding3.73E-04
23GO:0009882: blue light photoreceptor activity3.73E-04
24GO:0004834: tryptophan synthase activity4.99E-04
25GO:0016407: acetyltransferase activity6.32E-04
26GO:0004605: phosphatidate cytidylyltransferase activity7.73E-04
27GO:0004747: ribokinase activity9.20E-04
28GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.58E-03
29GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors1.58E-03
30GO:0071949: FAD binding1.58E-03
31GO:0005315: inorganic phosphate transmembrane transporter activity2.58E-03
32GO:0004386: helicase activity2.58E-03
33GO:0005528: FK506 binding3.49E-03
34GO:0003756: protein disulfide isomerase activity4.76E-03
35GO:0008514: organic anion transmembrane transporter activity4.76E-03
36GO:0016787: hydrolase activity5.71E-03
37GO:0016597: amino acid binding8.02E-03
38GO:0004806: triglyceride lipase activity9.36E-03
39GO:0003824: catalytic activity1.00E-02
40GO:0004693: cyclin-dependent protein serine/threonine kinase activity1.08E-02
41GO:0004712: protein serine/threonine/tyrosine kinase activity1.26E-02
42GO:0004364: glutathione transferase activity1.38E-02
43GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.58E-02
44GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.02E-02
45GO:0016874: ligase activity2.16E-02
46GO:0004252: serine-type endopeptidase activity2.85E-02
47GO:0015144: carbohydrate transmembrane transporter activity3.01E-02
48GO:0005351: sugar:proton symporter activity3.27E-02
49GO:0042802: identical protein binding3.95E-02
50GO:0008168: methyltransferase activity4.42E-02
51GO:0016301: kinase activity4.59E-02
52GO:0016788: hydrolase activity, acting on ester bonds4.60E-02
53GO:0043531: ADP binding4.84E-02
RankGO TermAdjusted P value
1GO:0005845: mRNA cap binding complex6.26E-05
2GO:0005846: nuclear cap binding complex1.52E-04
3GO:0016605: PML body2.57E-04
4GO:0005737: cytoplasm4.99E-04
5GO:0009517: PSII associated light-harvesting complex II4.99E-04
6GO:0009840: chloroplastic endopeptidase Clp complex9.20E-04
7GO:0031969: chloroplast membrane1.08E-03
8GO:0005763: mitochondrial small ribosomal subunit1.58E-03
9GO:0016604: nuclear body1.77E-03
10GO:0005875: microtubule associated complex3.26E-03
11GO:0045271: respiratory chain complex I3.74E-03
12GO:0009532: plastid stroma3.98E-03
13GO:0005643: nuclear pore1.01E-02
14GO:0009707: chloroplast outer membrane1.01E-02
15GO:0031966: mitochondrial membrane1.67E-02
16GO:0009941: chloroplast envelope1.87E-02
17GO:0005747: mitochondrial respiratory chain complex I2.02E-02
18GO:0016607: nuclear speck2.02E-02
19GO:0009543: chloroplast thylakoid lumen2.65E-02
20GO:0005759: mitochondrial matrix3.11E-02
21GO:0005615: extracellular space3.60E-02
22GO:0005774: vacuolar membrane4.23E-02
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Gene type



Gene DE type