co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G61550

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0030155: regulation of cell adhesion	0.00E+00
4	GO:0000025: maltose catabolic process	0.00E+00
5	GO:0033494: ferulate metabolic process	0.00E+00
6	GO:0090627: plant epidermal cell differentiation	0.00E+00
7	GO:0090279: regulation of calcium ion import	0.00E+00
8	GO:0015717: triose phosphate transport	0.00E+00
9	GO:1905177: tracheary element differentiation	0.00E+00
10	GO:0071474: cellular hyperosmotic response	0.00E+00
11	GO:0015979: photosynthesis	1.77E-07
12	GO:0032544: plastid translation	3.54E-07
13	GO:0009773: photosynthetic electron transport in photosystem I	1.80E-06
14	GO:0009735: response to cytokinin	5.06E-06
15	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.94E-06
16	GO:0015995: chlorophyll biosynthetic process	1.22E-05
17	GO:0006000: fructose metabolic process	2.42E-05
18	GO:0042254: ribosome biogenesis	4.59E-05
19	GO:0005983: starch catabolic process	8.22E-05
20	GO:0010021: amylopectin biosynthetic process	9.33E-05
21	GO:0006094: gluconeogenesis	1.00E-04
22	GO:0006412: translation	1.43E-04
23	GO:0006461: protein complex assembly	1.45E-04
24	GO:0009955: adaxial/abaxial pattern specification	2.80E-04
25	GO:0009409: response to cold	2.96E-04
26	GO:0031998: regulation of fatty acid beta-oxidation	3.94E-04
27	GO:0010028: xanthophyll cycle	3.94E-04
28	GO:0000023: maltose metabolic process	3.94E-04
29	GO:0006431: methionyl-tRNA aminoacylation	3.94E-04
30	GO:0005980: glycogen catabolic process	3.94E-04
31	GO:0071902: positive regulation of protein serine/threonine kinase activity	3.94E-04
32	GO:0080093: regulation of photorespiration	3.94E-04
33	GO:0006002: fructose 6-phosphate metabolic process	5.53E-04
34	GO:0005982: starch metabolic process	7.83E-04
35	GO:0016122: xanthophyll metabolic process	8.55E-04
36	GO:0051262: protein tetramerization	8.55E-04
37	GO:0005976: polysaccharide metabolic process	8.55E-04
38	GO:0051170: nuclear import	8.55E-04
39	GO:1901959: positive regulation of cutin biosynthetic process	8.55E-04
40	GO:0031648: protein destabilization	8.55E-04
41	GO:0006782: protoporphyrinogen IX biosynthetic process	9.10E-04
42	GO:0005986: sucrose biosynthetic process	1.36E-03
43	GO:0048281: inflorescence morphogenesis	1.39E-03
44	GO:0010506: regulation of autophagy	1.39E-03
45	GO:0006518: peptide metabolic process	1.39E-03
46	GO:0071230: cellular response to amino acid stimulus	1.39E-03
47	GO:0010623: programmed cell death involved in cell development	1.39E-03
48	GO:0080055: low-affinity nitrate transport	1.39E-03
49	GO:1904278: positive regulation of wax biosynthetic process	1.39E-03
50	GO:0035436: triose phosphate transmembrane transport	1.39E-03
51	GO:0031929: TOR signaling	1.39E-03
52	GO:0009817: defense response to fungus, incompatible interaction	1.44E-03
53	GO:0009266: response to temperature stimulus	1.53E-03
54	GO:0000160: phosphorelay signal transduction system	1.54E-03
55	GO:0010025: wax biosynthetic process	1.91E-03
56	GO:1902358: sulfate transmembrane transport	2.00E-03
57	GO:1901000: regulation of response to salt stress	2.00E-03
58	GO:0030100: regulation of endocytosis	2.00E-03
59	GO:0010731: protein glutathionylation	2.00E-03
60	GO:0010148: transpiration	2.00E-03
61	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.00E-03
62	GO:0006289: nucleotide-excision repair	2.12E-03
63	GO:0061077: chaperone-mediated protein folding	2.57E-03
64	GO:0015976: carbon utilization	2.69E-03
65	GO:0010023: proanthocyanidin biosynthetic process	2.69E-03
66	GO:0051322: anaphase	2.69E-03
67	GO:0009765: photosynthesis, light harvesting	2.69E-03
68	GO:0006109: regulation of carbohydrate metabolic process	2.69E-03
69	GO:0015994: chlorophyll metabolic process	2.69E-03
70	GO:2000122: negative regulation of stomatal complex development	2.69E-03
71	GO:0015846: polyamine transport	2.69E-03
72	GO:0010600: regulation of auxin biosynthetic process	2.69E-03
73	GO:0045723: positive regulation of fatty acid biosynthetic process	2.69E-03
74	GO:0010508: positive regulation of autophagy	2.69E-03
75	GO:0015713: phosphoglycerate transport	2.69E-03
76	GO:0006749: glutathione metabolic process	2.69E-03
77	GO:0010037: response to carbon dioxide	2.69E-03
78	GO:0006808: regulation of nitrogen utilization	2.69E-03
79	GO:0010114: response to red light	2.70E-03
80	GO:0010017: red or far-red light signaling pathway	2.81E-03
81	GO:0006284: base-excision repair	3.33E-03
82	GO:0006656: phosphatidylcholine biosynthetic process	3.44E-03
83	GO:0006097: glyoxylate cycle	3.44E-03
84	GO:0035434: copper ion transmembrane transport	3.44E-03
85	GO:0006979: response to oxidative stress	3.98E-03
86	GO:0000470: maturation of LSU-rRNA	4.26E-03
87	GO:0009913: epidermal cell differentiation	4.26E-03
88	GO:0009267: cellular response to starvation	4.26E-03
89	GO:0010190: cytochrome b6f complex assembly	4.26E-03
90	GO:0009643: photosynthetic acclimation	4.26E-03
91	GO:0019252: starch biosynthetic process	4.86E-03
92	GO:0071470: cellular response to osmotic stress	5.13E-03
93	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	5.13E-03
94	GO:0042026: protein refolding	5.13E-03
95	GO:0006458: 'de novo' protein folding	5.13E-03
96	GO:1901259: chloroplast rRNA processing	5.13E-03
97	GO:1901657: glycosyl compound metabolic process	5.93E-03
98	GO:0010161: red light signaling pathway	6.06E-03
99	GO:0070370: cellular heat acclimation	6.06E-03
100	GO:0009645: response to low light intensity stimulus	6.06E-03
101	GO:0008272: sulfate transport	6.06E-03
102	GO:0030307: positive regulation of cell growth	6.06E-03
103	GO:0010103: stomatal complex morphogenesis	6.06E-03
104	GO:0019827: stem cell population maintenance	7.05E-03
105	GO:0010928: regulation of auxin mediated signaling pathway	7.05E-03
106	GO:0005978: glycogen biosynthetic process	7.05E-03
107	GO:0030091: protein repair	7.05E-03
108	GO:0006353: DNA-templated transcription, termination	7.05E-03
109	GO:0009704: de-etiolation	7.05E-03
110	GO:0009231: riboflavin biosynthetic process	7.05E-03
111	GO:0001558: regulation of cell growth	8.09E-03
112	GO:0009657: plastid organization	8.09E-03
113	GO:0009058: biosynthetic process	8.83E-03
114	GO:0051865: protein autoubiquitination	9.18E-03
115	GO:0010206: photosystem II repair	9.18E-03
116	GO:0006783: heme biosynthetic process	9.18E-03
117	GO:0045454: cell redox homeostasis	9.61E-03
118	GO:0006779: porphyrin-containing compound biosynthetic process	1.03E-02
119	GO:0042761: very long-chain fatty acid biosynthetic process	1.03E-02
120	GO:0009407: toxin catabolic process	1.09E-02
121	GO:0010218: response to far red light	1.09E-02
122	GO:0006869: lipid transport	1.11E-02
123	GO:0009631: cold acclimation	1.14E-02
124	GO:0006949: syncytium formation	1.15E-02
125	GO:0031627: telomeric loop formation	1.15E-02
126	GO:0048829: root cap development	1.15E-02
127	GO:0007623: circadian rhythm	1.25E-02
128	GO:0009073: aromatic amino acid family biosynthetic process	1.28E-02
129	GO:0043085: positive regulation of catalytic activity	1.28E-02
130	GO:0006415: translational termination	1.28E-02
131	GO:0009750: response to fructose	1.28E-02
132	GO:0034599: cellular response to oxidative stress	1.31E-02
133	GO:0055114: oxidation-reduction process	1.34E-02
134	GO:0008361: regulation of cell size	1.41E-02
135	GO:0006631: fatty acid metabolic process	1.49E-02
136	GO:0009718: anthocyanin-containing compound biosynthetic process	1.54E-02
137	GO:0010102: lateral root morphogenesis	1.54E-02
138	GO:0010628: positive regulation of gene expression	1.54E-02
139	GO:0006108: malate metabolic process	1.54E-02
140	GO:0006006: glucose metabolic process	1.54E-02
141	GO:0009640: photomorphogenesis	1.62E-02
142	GO:0010143: cutin biosynthetic process	1.68E-02
143	GO:0019253: reductive pentose-phosphate cycle	1.68E-02
144	GO:0009887: animal organ morphogenesis	1.68E-02
145	GO:0009644: response to high light intensity	1.75E-02
146	GO:0009636: response to toxic substance	1.82E-02
147	GO:0005985: sucrose metabolic process	1.82E-02
148	GO:0009664: plant-type cell wall organization	2.04E-02
149	GO:0009944: polarity specification of adaxial/abaxial axis	2.11E-02
150	GO:0000027: ribosomal large subunit assembly	2.11E-02
151	GO:0009658: chloroplast organization	2.17E-02
152	GO:0006825: copper ion transport	2.27E-02
153	GO:0051302: regulation of cell division	2.27E-02
154	GO:0006418: tRNA aminoacylation for protein translation	2.27E-02
155	GO:0007017: microtubule-based process	2.27E-02
156	GO:0009768: photosynthesis, light harvesting in photosystem I	2.27E-02
157	GO:0048511: rhythmic process	2.43E-02
158	GO:0019915: lipid storage	2.43E-02
159	GO:0003333: amino acid transmembrane transport	2.43E-02
160	GO:0005975: carbohydrate metabolic process	2.55E-02
161	GO:0043086: negative regulation of catalytic activity	2.59E-02
162	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.59E-02
163	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.75E-02
164	GO:0009686: gibberellin biosynthetic process	2.75E-02
165	GO:0001944: vasculature development	2.75E-02
166	GO:0010089: xylem development	2.92E-02
167	GO:0042335: cuticle development	3.27E-02
168	GO:0006885: regulation of pH	3.45E-02
169	GO:0006662: glycerol ether metabolic process	3.45E-02
170	GO:0048825: cotyledon development	3.82E-02
171	GO:0000302: response to reactive oxygen species	4.01E-02
172	GO:0048235: pollen sperm cell differentiation	4.20E-02
173	GO:0030163: protein catabolic process	4.39E-02
174	GO:0006281: DNA repair	4.59E-02
175	GO:0009828: plant-type cell wall loosening	4.59E-02
176	GO:0006310: DNA recombination	4.59E-02
177	GO:0000910: cytokinesis	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
6	GO:0004134: 4-alpha-glucanotransferase activity	0.00E+00
7	GO:0080082: esculin beta-glucosidase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
10	GO:0004567: beta-mannosidase activity	0.00E+00
11	GO:0009899: ent-kaurene synthase activity	0.00E+00
12	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
13	GO:0019843: rRNA binding	3.56E-11
14	GO:0003735: structural constituent of ribosome	4.66E-06
15	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.94E-06
16	GO:0016851: magnesium chelatase activity	5.29E-05
17	GO:2001070: starch binding	2.07E-04
18	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.94E-04
19	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.94E-04
20	GO:0005227: calcium activated cation channel activity	3.94E-04
21	GO:0080079: cellobiose glucosidase activity	3.94E-04
22	GO:0008184: glycogen phosphorylase activity	3.94E-04
23	GO:0004105: choline-phosphate cytidylyltransferase activity	3.94E-04
24	GO:0004856: xylulokinase activity	3.94E-04
25	GO:0004645: phosphorylase activity	3.94E-04
26	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	3.94E-04
27	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	3.94E-04
28	GO:0004853: uroporphyrinogen decarboxylase activity	3.94E-04
29	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	3.94E-04
30	GO:0004825: methionine-tRNA ligase activity	3.94E-04
31	GO:0000156: phosphorelay response regulator activity	7.68E-04
32	GO:0010297: heteropolysaccharide binding	8.55E-04
33	GO:0047216: inositol 3-alpha-galactosyltransferase activity	8.55E-04
34	GO:0033201: alpha-1,4-glucan synthase activity	8.55E-04
35	GO:0018708: thiol S-methyltransferase activity	8.55E-04
36	GO:0003844: 1,4-alpha-glucan branching enzyme activity	8.55E-04
37	GO:0008967: phosphoglycolate phosphatase activity	8.55E-04
38	GO:0016868: intramolecular transferase activity, phosphotransferases	8.55E-04
39	GO:0044183: protein binding involved in protein folding	1.05E-03
40	GO:0047372: acylglycerol lipase activity	1.05E-03
41	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.39E-03
42	GO:0004324: ferredoxin-NADP+ reductase activity	1.39E-03
43	GO:0043169: cation binding	1.39E-03
44	GO:0004373: glycogen (starch) synthase activity	1.39E-03
45	GO:0017150: tRNA dihydrouridine synthase activity	1.39E-03
46	GO:0050734: hydroxycinnamoyltransferase activity	1.39E-03
47	GO:0017108: 5'-flap endonuclease activity	1.39E-03
48	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.39E-03
49	GO:0071917: triose-phosphate transmembrane transporter activity	1.39E-03
50	GO:0016149: translation release factor activity, codon specific	2.00E-03
51	GO:0015203: polyamine transmembrane transporter activity	2.00E-03
52	GO:0043023: ribosomal large subunit binding	2.00E-03
53	GO:0004364: glutathione transferase activity	2.56E-03
54	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.69E-03
55	GO:0019104: DNA N-glycosylase activity	2.69E-03
56	GO:0009011: starch synthase activity	2.69E-03
57	GO:0019199: transmembrane receptor protein kinase activity	2.69E-03
58	GO:0042277: peptide binding	2.69E-03
59	GO:0015120: phosphoglycerate transmembrane transporter activity	2.69E-03
60	GO:0008725: DNA-3-methyladenine glycosylase activity	3.44E-03
61	GO:0003959: NADPH dehydrogenase activity	3.44E-03
62	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	3.44E-03
63	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.44E-03
64	GO:0004332: fructose-bisphosphate aldolase activity	4.26E-03
65	GO:0004130: cytochrome-c peroxidase activity	4.26E-03
66	GO:0016615: malate dehydrogenase activity	4.26E-03
67	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	5.13E-03
68	GO:0030060: L-malate dehydrogenase activity	5.13E-03
69	GO:0005261: cation channel activity	5.13E-03
70	GO:0004602: glutathione peroxidase activity	5.13E-03
71	GO:0048038: quinone binding	5.21E-03
72	GO:0015035: protein disulfide oxidoreductase activity	6.43E-03
73	GO:0030674: protein binding, bridging	7.05E-03
74	GO:0016209: antioxidant activity	7.05E-03
75	GO:0004033: aldo-keto reductase (NADP) activity	7.05E-03
76	GO:0008271: secondary active sulfate transmembrane transporter activity	8.09E-03
77	GO:0005375: copper ion transmembrane transporter activity	8.09E-03
78	GO:0102483: scopolin beta-glucosidase activity	8.89E-03
79	GO:0003747: translation release factor activity	9.18E-03
80	GO:0015174: basic amino acid transmembrane transporter activity	1.03E-02
81	GO:0004222: metalloendopeptidase activity	1.09E-02
82	GO:0008047: enzyme activator activity	1.15E-02
83	GO:0003691: double-stranded telomeric DNA binding	1.28E-02
84	GO:0008422: beta-glucosidase activity	1.37E-02
85	GO:0015116: sulfate transmembrane transporter activity	1.41E-02
86	GO:0008378: galactosyltransferase activity	1.41E-02
87	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.41E-02
88	GO:0009055: electron carrier activity	1.47E-02
89	GO:0004565: beta-galactosidase activity	1.54E-02
90	GO:0004022: alcohol dehydrogenase (NAD) activity	1.54E-02
91	GO:0004089: carbonate dehydratase activity	1.54E-02
92	GO:0008266: poly(U) RNA binding	1.68E-02
93	GO:0015293: symporter activity	1.82E-02
94	GO:0016491: oxidoreductase activity	1.95E-02
95	GO:0031409: pigment binding	1.96E-02
96	GO:0004857: enzyme inhibitor activity	2.11E-02
97	GO:0005528: FK506 binding	2.11E-02
98	GO:0008289: lipid binding	2.17E-02
99	GO:0030570: pectate lyase activity	2.75E-02
100	GO:0004812: aminoacyl-tRNA ligase activity	3.09E-02
101	GO:0047134: protein-disulfide reductase activity	3.09E-02
102	GO:0005451: monovalent cation:proton antiporter activity	3.27E-02
103	GO:0001085: RNA polymerase II transcription factor binding	3.45E-02
104	GO:0003713: transcription coactivator activity	3.45E-02
105	GO:0004791: thioredoxin-disulfide reductase activity	3.63E-02
106	GO:0015299: solute:proton antiporter activity	3.63E-02
107	GO:0004518: nuclease activity	4.20E-02
108	GO:0004252: serine-type endopeptidase activity	4.32E-02
109	GO:0030170: pyridoxal phosphate binding	4.32E-02
110	GO:0015385: sodium:proton antiporter activity	4.39E-02
111	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.39E-02
112	GO:0003684: damaged DNA binding	4.59E-02
113	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.63E-02
114	GO:0016787: hydrolase activity	4.79E-02
115	GO:0008483: transaminase activity	4.79E-02
116	GO:0008237: metallopeptidase activity	4.79E-02
117	GO:0005200: structural constituent of cytoskeleton	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
3	GO:0033557: Slx1-Slx4 complex	0.00E+00
4	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
5	GO:0009507: chloroplast	1.99E-35
6	GO:0009570: chloroplast stroma	2.73E-29
7	GO:0009941: chloroplast envelope	2.01E-24
8	GO:0009534: chloroplast thylakoid	9.95E-21
9	GO:0009535: chloroplast thylakoid membrane	1.17E-20
10	GO:0009579: thylakoid	2.60E-11
11	GO:0009543: chloroplast thylakoid lumen	3.98E-06
12	GO:0005840: ribosome	5.36E-06
13	GO:0009501: amyloplast	1.56E-05
14	GO:0010007: magnesium chelatase complex	2.42E-05
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.05E-05
16	GO:0010287: plastoglobule	3.75E-05
17	GO:0031977: thylakoid lumen	4.20E-05
18	GO:0030095: chloroplast photosystem II	1.21E-04
19	GO:0009533: chloroplast stromal thylakoid	3.62E-04
20	GO:0030093: chloroplast photosystem I	8.55E-04
21	GO:0043036: starch grain	8.55E-04
22	GO:0010319: stromule	8.95E-04
23	GO:0009295: nucleoid	8.95E-04
24	GO:0009508: plastid chromosome	1.36E-03
25	GO:0031931: TORC1 complex	1.39E-03
26	GO:0016020: membrane	2.26E-03
27	GO:0015935: small ribosomal subunit	2.57E-03
28	GO:0005798: Golgi-associated vesicle	4.26E-03
29	GO:0048046: apoplast	4.71E-03
30	GO:0009523: photosystem II	4.86E-03
31	GO:0009536: plastid	6.09E-03
32	GO:0009538: photosystem I reaction center	7.05E-03
33	GO:0000783: nuclear telomere cap complex	8.09E-03
34	GO:0005763: mitochondrial small ribosomal subunit	9.18E-03
35	GO:0042644: chloroplast nucleoid	9.18E-03
36	GO:0045298: tubulin complex	9.18E-03
37	GO:0009574: preprophase band	1.54E-02
38	GO:0030076: light-harvesting complex	1.82E-02
39	GO:0005769: early endosome	1.96E-02
40	GO:0009654: photosystem II oxygen evolving complex	2.27E-02
41	GO:0042651: thylakoid membrane	2.27E-02
42	GO:0005874: microtubule	2.72E-02
43	GO:0022625: cytosolic large ribosomal subunit	3.02E-02
44	GO:0009706: chloroplast inner membrane	3.11E-02
45	GO:0009522: photosystem I	3.63E-02
46	GO:0019898: extrinsic component of membrane	3.82E-02