co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G61110

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
2	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
3	GO:0090239: regulation of histone H4 acetylation	0.00E+00
4	GO:0000740: nuclear membrane fusion	0.00E+00
5	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
6	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
7	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
8	GO:0046487: glyoxylate metabolic process	0.00E+00
9	GO:0070918: production of small RNA involved in gene silencing by RNA	0.00E+00
10	GO:0007530: sex determination	0.00E+00
11	GO:0006412: translation	8.85E-155
12	GO:0042254: ribosome biogenesis	9.99E-61
13	GO:0000027: ribosomal large subunit assembly	1.06E-12
14	GO:0000028: ribosomal small subunit assembly	3.17E-08
15	GO:0009735: response to cytokinin	2.78E-06
16	GO:0006626: protein targeting to mitochondrion	3.04E-05
17	GO:0009955: adaxial/abaxial pattern specification	3.75E-05
18	GO:0002181: cytoplasmic translation	8.42E-05
19	GO:1902626: assembly of large subunit precursor of preribosome	8.42E-05
20	GO:0000387: spliceosomal snRNP assembly	1.94E-04
21	GO:0006820: anion transport	3.61E-04
22	GO:0006414: translational elongation	3.97E-04
23	GO:0043248: proteasome assembly	5.99E-04
24	GO:1990258: histone glutamine methylation	7.90E-04
25	GO:0006475: internal protein amino acid acetylation	7.90E-04
26	GO:0015801: aromatic amino acid transport	7.90E-04
27	GO:0017198: N-terminal peptidyl-serine acetylation	7.90E-04
28	GO:0030490: maturation of SSU-rRNA	7.90E-04
29	GO:2001006: regulation of cellulose biosynthetic process	7.90E-04
30	GO:0000494: box C/D snoRNA 3'-end processing	7.90E-04
31	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	7.90E-04
32	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	7.90E-04
33	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	7.90E-04
34	GO:0032365: intracellular lipid transport	7.90E-04
35	GO:0006407: rRNA export from nucleus	7.90E-04
36	GO:0006511: ubiquitin-dependent protein catabolic process	8.57E-04
37	GO:0022900: electron transport chain	1.53E-03
38	GO:0009651: response to salt stress	1.67E-03
39	GO:0000413: protein peptidyl-prolyl isomerization	1.69E-03
40	GO:0015786: UDP-glucose transport	1.71E-03
41	GO:0051788: response to misfolded protein	1.71E-03
42	GO:0006432: phenylalanyl-tRNA aminoacylation	1.71E-03
43	GO:0045905: positive regulation of translational termination	1.71E-03
44	GO:0071668: plant-type cell wall assembly	1.71E-03
45	GO:0045901: positive regulation of translational elongation	1.71E-03
46	GO:0045041: protein import into mitochondrial intermembrane space	1.71E-03
47	GO:0048569: post-embryonic animal organ development	1.71E-03
48	GO:0043981: histone H4-K5 acetylation	1.71E-03
49	GO:0055129: L-proline biosynthetic process	1.71E-03
50	GO:0006452: translational frameshifting	1.71E-03
51	GO:0010198: synergid death	1.71E-03
52	GO:0000398: mRNA splicing, via spliceosome	1.80E-03
53	GO:0098656: anion transmembrane transport	1.84E-03
54	GO:0009245: lipid A biosynthetic process	1.84E-03
55	GO:0009793: embryo development ending in seed dormancy	2.32E-03
56	GO:1904278: positive regulation of wax biosynthetic process	2.83E-03
57	GO:0009150: purine ribonucleotide metabolic process	2.83E-03
58	GO:0045793: positive regulation of cell size	2.83E-03
59	GO:0015783: GDP-fucose transport	2.83E-03
60	GO:0034227: tRNA thio-modification	2.83E-03
61	GO:0042256: mature ribosome assembly	2.83E-03
62	GO:0090506: axillary shoot meristem initiation	2.83E-03
63	GO:0010452: histone H3-K36 methylation	2.83E-03
64	GO:0046168: glycerol-3-phosphate catabolic process	2.83E-03
65	GO:0006165: nucleoside diphosphate phosphorylation	4.12E-03
66	GO:0006228: UTP biosynthetic process	4.12E-03
67	GO:0006164: purine nucleotide biosynthetic process	4.12E-03
68	GO:0006168: adenine salvage	4.12E-03
69	GO:0009558: embryo sac cellularization	4.12E-03
70	GO:0032877: positive regulation of DNA endoreduplication	4.12E-03
71	GO:0046836: glycolipid transport	4.12E-03
72	GO:0006166: purine ribonucleoside salvage	4.12E-03
73	GO:0070301: cellular response to hydrogen peroxide	4.12E-03
74	GO:0051085: chaperone mediated protein folding requiring cofactor	4.12E-03
75	GO:0006107: oxaloacetate metabolic process	4.12E-03
76	GO:0006241: CTP biosynthetic process	4.12E-03
77	GO:0072334: UDP-galactose transmembrane transport	4.12E-03
78	GO:0006072: glycerol-3-phosphate metabolic process	4.12E-03
79	GO:0009647: skotomorphogenesis	4.12E-03
80	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	4.12E-03
81	GO:0032366: intracellular sterol transport	5.58E-03
82	GO:2000032: regulation of secondary shoot formation	5.58E-03
83	GO:0009165: nucleotide biosynthetic process	5.58E-03
84	GO:0051781: positive regulation of cell division	5.58E-03
85	GO:0042274: ribosomal small subunit biogenesis	5.58E-03
86	GO:0010387: COP9 signalosome assembly	5.58E-03
87	GO:0006183: GTP biosynthetic process	5.58E-03
88	GO:0010363: regulation of plant-type hypersensitive response	5.58E-03
89	GO:0006621: protein retention in ER lumen	5.58E-03
90	GO:0030150: protein import into mitochondrial matrix	6.08E-03
91	GO:0006406: mRNA export from nucleus	6.08E-03
92	GO:0006289: nucleotide-excision repair	6.08E-03
93	GO:0006487: protein N-linked glycosylation	6.08E-03
94	GO:0009116: nucleoside metabolic process	6.08E-03
95	GO:1902183: regulation of shoot apical meristem development	7.18E-03
96	GO:0044209: AMP salvage	7.18E-03
97	GO:0071493: cellular response to UV-B	7.18E-03
98	GO:0031167: rRNA methylation	7.18E-03
99	GO:0061077: chaperone-mediated protein folding	7.40E-03
100	GO:0006574: valine catabolic process	8.92E-03
101	GO:0006561: proline biosynthetic process	8.92E-03
102	GO:0051568: histone H3-K4 methylation	8.92E-03
103	GO:0000470: maturation of LSU-rRNA	8.92E-03
104	GO:0045040: protein import into mitochondrial outer membrane	8.92E-03
105	GO:0042026: protein refolding	1.08E-02
106	GO:0006458: 'de novo' protein folding	1.08E-02
107	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.08E-02
108	GO:0000054: ribosomal subunit export from nucleus	1.08E-02
109	GO:1901001: negative regulation of response to salt stress	1.08E-02
110	GO:0000911: cytokinesis by cell plate formation	1.08E-02
111	GO:0015991: ATP hydrolysis coupled proton transport	1.14E-02
112	GO:0009965: leaf morphogenesis	1.22E-02
113	GO:0006413: translational initiation	1.23E-02
114	GO:0032880: regulation of protein localization	1.28E-02
115	GO:0048528: post-embryonic root development	1.28E-02
116	GO:0000338: protein deneddylation	1.28E-02
117	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	1.28E-02
118	GO:0010183: pollen tube guidance	1.42E-02
119	GO:0009690: cytokinin metabolic process	1.50E-02
120	GO:0050821: protein stabilization	1.50E-02
121	GO:0031540: regulation of anthocyanin biosynthetic process	1.50E-02
122	GO:0051603: proteolysis involved in cellular protein catabolic process	1.60E-02
123	GO:0001510: RNA methylation	1.72E-02
124	GO:0010204: defense response signaling pathway, resistance gene-independent	1.72E-02
125	GO:0044030: regulation of DNA methylation	1.72E-02
126	GO:0009808: lignin metabolic process	1.72E-02
127	GO:0046686: response to cadmium ion	1.96E-02
128	GO:0006189: 'de novo' IMP biosynthetic process	1.96E-02
129	GO:0048589: developmental growth	1.96E-02
130	GO:0009060: aerobic respiration	1.96E-02
131	GO:0015780: nucleotide-sugar transport	1.96E-02
132	GO:0010267: production of ta-siRNAs involved in RNA interference	2.21E-02
133	GO:0043069: negative regulation of programmed cell death	2.46E-02
134	GO:0016441: posttranscriptional gene silencing	2.46E-02
135	GO:0015031: protein transport	2.73E-02
136	GO:0015770: sucrose transport	2.73E-02
137	GO:0010015: root morphogenesis	2.73E-02
138	GO:0006913: nucleocytoplasmic transport	2.73E-02
139	GO:0016925: protein sumoylation	3.01E-02
140	GO:0006790: sulfur compound metabolic process	3.01E-02
141	GO:0010102: lateral root morphogenesis	3.30E-02
142	GO:0010628: positive regulation of gene expression	3.30E-02
143	GO:0006807: nitrogen compound metabolic process	3.30E-02
144	GO:0006108: malate metabolic process	3.30E-02
145	GO:2000028: regulation of photoperiodism, flowering	3.30E-02
146	GO:0006446: regulation of translational initiation	3.59E-02
147	GO:0048467: gynoecium development	3.59E-02
148	GO:0009853: photorespiration	3.66E-02
149	GO:0010039: response to iron ion	3.90E-02
150	GO:0008283: cell proliferation	4.70E-02
151	GO:0009908: flower development	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0004735: pyrroline-5-carboxylate reductase activity	0.00E+00
2	GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity	0.00E+00
3	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
4	GO:0050152: omega-amidase activity	0.00E+00
5	GO:0003735: structural constituent of ribosome	5.78E-198
6	GO:0003729: mRNA binding	3.66E-36
7	GO:0019843: rRNA binding	2.68E-16
8	GO:0015288: porin activity	8.25E-05
9	GO:0004298: threonine-type endopeptidase activity	1.10E-04
10	GO:0008308: voltage-gated anion channel activity	1.13E-04
11	GO:0008097: 5S rRNA binding	1.73E-04
12	GO:0001055: RNA polymerase II activity	1.94E-04
13	GO:0003746: translation elongation factor activity	2.68E-04
14	GO:0004576: oligosaccharyl transferase activity	2.90E-04
15	GO:0004129: cytochrome-c oxidase activity	2.99E-04
16	GO:0001054: RNA polymerase I activity	2.99E-04
17	GO:0001056: RNA polymerase III activity	3.61E-04
18	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	4.32E-04
19	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.76E-04
20	GO:0031177: phosphopantetheine binding	5.99E-04
21	GO:1990190: peptide-glutamate-N-acetyltransferase activity	7.90E-04
22	GO:0005080: protein kinase C binding	7.90E-04
23	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	7.90E-04
24	GO:1990259: histone-glutamine methyltransferase activity	7.90E-04
25	GO:0035614: snRNA stem-loop binding	7.90E-04
26	GO:0000824: inositol tetrakisphosphate 3-kinase activity	7.90E-04
27	GO:1990189: peptide-serine-N-acetyltransferase activity	7.90E-04
28	GO:0047326: inositol tetrakisphosphate 5-kinase activity	7.90E-04
29	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	7.90E-04
30	GO:0000035: acyl binding	7.91E-04
31	GO:0008233: peptidase activity	1.00E-03
32	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.02E-03
33	GO:0003723: RNA binding	1.22E-03
34	GO:0043022: ribosome binding	1.25E-03
35	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.25E-03
36	GO:0004826: phenylalanine-tRNA ligase activity	1.71E-03
37	GO:0030619: U1 snRNA binding	1.71E-03
38	GO:0015173: aromatic amino acid transmembrane transporter activity	1.71E-03
39	GO:0032934: sterol binding	1.71E-03
40	GO:1990585: hydroxyproline O-arabinosyltransferase activity	1.71E-03
41	GO:0070181: small ribosomal subunit rRNA binding	2.83E-03
42	GO:0008649: rRNA methyltransferase activity	2.83E-03
43	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	2.83E-03
44	GO:0005457: GDP-fucose transmembrane transporter activity	2.83E-03
45	GO:0070180: large ribosomal subunit rRNA binding	2.83E-03
46	GO:0008430: selenium binding	2.83E-03
47	GO:0005047: signal recognition particle binding	2.83E-03
48	GO:0044183: protein binding involved in protein folding	2.96E-03
49	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.44E-03
50	GO:0015266: protein channel activity	3.86E-03
51	GO:0005460: UDP-glucose transmembrane transporter activity	4.12E-03
52	GO:0004550: nucleoside diphosphate kinase activity	4.12E-03
53	GO:0047627: adenylylsulfatase activity	4.12E-03
54	GO:0017089: glycolipid transporter activity	4.12E-03
55	GO:0004749: ribose phosphate diphosphokinase activity	4.12E-03
56	GO:0003999: adenine phosphoribosyltransferase activity	4.12E-03
57	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	5.58E-03
58	GO:0010011: auxin binding	5.58E-03
59	GO:0051861: glycolipid binding	5.58E-03
60	GO:0046923: ER retention sequence binding	5.58E-03
61	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	5.58E-03
62	GO:0070628: proteasome binding	5.58E-03
63	GO:0005275: amine transmembrane transporter activity	7.18E-03
64	GO:0031386: protein tag	7.18E-03
65	GO:0005459: UDP-galactose transmembrane transporter activity	7.18E-03
66	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	8.92E-03
67	GO:0031593: polyubiquitin binding	8.92E-03
68	GO:0051920: peroxiredoxin activity	1.08E-02
69	GO:0030515: snoRNA binding	1.28E-02
70	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.28E-02
71	GO:0042162: telomeric DNA binding	1.28E-02
72	GO:0008121: ubiquinol-cytochrome-c reductase activity	1.28E-02
73	GO:0004872: receptor activity	1.42E-02
74	GO:0016209: antioxidant activity	1.50E-02
75	GO:0035064: methylated histone binding	1.50E-02
76	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.52E-02
77	GO:0051082: unfolded protein binding	2.40E-02
78	GO:0046961: proton-transporting ATPase activity, rotational mechanism	2.73E-02
79	GO:0008794: arsenate reductase (glutaredoxin) activity	2.73E-02
80	GO:0008515: sucrose transmembrane transporter activity	2.73E-02
81	GO:0000049: tRNA binding	3.01E-02
82	GO:0031072: heat shock protein binding	3.30E-02
83	GO:0050897: cobalt ion binding	3.33E-02
84	GO:0003993: acid phosphatase activity	3.82E-02
85	GO:0051119: sugar transmembrane transporter activity	3.90E-02
86	GO:0051536: iron-sulfur cluster binding	4.53E-02
87	GO:0043130: ubiquitin binding	4.53E-02
88	GO:0005528: FK506 binding	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
2	GO:0043186: P granule	0.00E+00
3	GO:0005675: holo TFIIH complex	0.00E+00
4	GO:0097361: CIA complex	0.00E+00
5	GO:0005840: ribosome	2.25E-138
6	GO:0022626: cytosolic ribosome	1.44E-124
7	GO:0022625: cytosolic large ribosomal subunit	7.78E-121
8	GO:0022627: cytosolic small ribosomal subunit	1.58E-82
9	GO:0005829: cytosol	1.50E-43
10	GO:0005737: cytoplasm	9.01E-38
11	GO:0005730: nucleolus	2.90E-37
12	GO:0009506: plasmodesma	9.09E-22
13	GO:0015934: large ribosomal subunit	1.56E-19
14	GO:0005774: vacuolar membrane	8.09E-18
15	GO:0005773: vacuole	1.79E-13
16	GO:0016020: membrane	8.04E-12
17	GO:0015935: small ribosomal subunit	1.63E-10
18	GO:0005618: cell wall	5.84E-08
19	GO:0000502: proteasome complex	1.64E-06
20	GO:0000419: DNA-directed RNA polymerase V complex	2.94E-06
21	GO:0005665: DNA-directed RNA polymerase II, core complex	2.31E-05
22	GO:0009507: chloroplast	3.77E-05
23	GO:0005732: small nucleolar ribonucleoprotein complex	6.72E-05
24	GO:0005853: eukaryotic translation elongation factor 1 complex	8.42E-05
25	GO:0005839: proteasome core complex	1.10E-04
26	GO:0046930: pore complex	1.13E-04
27	GO:0005742: mitochondrial outer membrane translocase complex	1.13E-04
28	GO:0005736: DNA-directed RNA polymerase I complex	1.51E-04
29	GO:0005666: DNA-directed RNA polymerase III complex	1.94E-04
30	GO:0005747: mitochondrial respiratory chain complex I	2.21E-04
31	GO:0019013: viral nucleocapsid	4.30E-04
32	GO:0008250: oligosaccharyltransferase complex	4.32E-04
33	GO:0005750: mitochondrial respiratory chain complex III	5.05E-04
34	GO:0005753: mitochondrial proton-transporting ATP synthase complex	5.87E-04
35	GO:0005758: mitochondrial intermembrane space	7.73E-04
36	GO:0030686: 90S preribosome	7.90E-04
37	GO:0005741: mitochondrial outer membrane	9.90E-04
38	GO:0005697: telomerase holoenzyme complex	1.71E-03
39	GO:0035145: exon-exon junction complex	1.71E-03
40	GO:0031415: NatA complex	1.71E-03
41	GO:0005685: U1 snRNP	1.84E-03
42	GO:0005886: plasma membrane	1.87E-03
43	GO:0071011: precatalytic spliceosome	2.18E-03
44	GO:0015030: Cajal body	2.18E-03
45	GO:0000418: DNA-directed RNA polymerase IV complex	2.55E-03
46	GO:0034719: SMN-Sm protein complex	2.83E-03
47	GO:0000439: core TFIIH complex	2.83E-03
48	GO:0008541: proteasome regulatory particle, lid subcomplex	2.96E-03
49	GO:0071013: catalytic step 2 spliceosome	2.96E-03
50	GO:0048471: perinuclear region of cytoplasm	2.96E-03
51	GO:0009331: glycerol-3-phosphate dehydrogenase complex	4.12E-03
52	GO:0033180: proton-transporting V-type ATPase, V1 domain	4.12E-03
53	GO:1990726: Lsm1-7-Pat1 complex	4.12E-03
54	GO:0005681: spliceosomal complex	4.46E-03
55	GO:0000445: THO complex part of transcription export complex	5.58E-03
56	GO:0016471: vacuolar proton-transporting V-type ATPase complex	5.58E-03
57	GO:0016593: Cdc73/Paf1 complex	5.58E-03
58	GO:0005682: U5 snRNP	5.58E-03
59	GO:0045271: respiratory chain complex I	6.73E-03
60	GO:0070469: respiratory chain	6.73E-03
61	GO:0005687: U4 snRNP	7.18E-03
62	GO:0097526: spliceosomal tri-snRNP complex	7.18E-03
63	GO:0005746: mitochondrial respiratory chain	7.18E-03
64	GO:0031428: box C/D snoRNP complex	8.92E-03
65	GO:0005762: mitochondrial large ribosomal subunit	1.08E-02
66	GO:0005801: cis-Golgi network	1.08E-02
67	GO:0005689: U12-type spliceosomal complex	1.08E-02
68	GO:0016272: prefoldin complex	1.08E-02
69	GO:0005777: peroxisome	1.15E-02
70	GO:0005622: intracellular	1.18E-02
71	GO:0000347: THO complex	1.28E-02
72	GO:0071004: U2-type prespliceosome	1.50E-02
73	GO:0045273: respiratory chain complex II	1.50E-02
74	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	1.50E-02
75	GO:0005688: U6 snRNP	1.50E-02
76	GO:0019773: proteasome core complex, alpha-subunit complex	1.72E-02
77	GO:0046540: U4/U6 x U5 tri-snRNP complex	1.72E-02
78	GO:0005763: mitochondrial small ribosomal subunit	1.96E-02
79	GO:0008180: COP9 signalosome	1.96E-02
80	GO:0005788: endoplasmic reticulum lumen	2.33E-02
81	GO:0005686: U2 snRNP	2.46E-02
82	GO:0005740: mitochondrial envelope	2.46E-02
83	GO:0009536: plastid	2.53E-02
84	GO:0005852: eukaryotic translation initiation factor 3 complex	2.73E-02
85	GO:0031307: integral component of mitochondrial outer membrane	3.01E-02
86	GO:0032040: small-subunit processome	3.01E-02
87	GO:0005654: nucleoplasm	3.08E-02
88	GO:0009508: plastid chromosome	3.30E-02
89	GO:0005759: mitochondrial matrix	4.22E-02
90	GO:0005739: mitochondrion	4.78E-02