Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G61080

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905421: regulation of plant organ morphogenesis0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0030155: regulation of cell adhesion0.00E+00
4GO:0000025: maltose catabolic process0.00E+00
5GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
6GO:0033494: ferulate metabolic process0.00E+00
7GO:0016553: base conversion or substitution editing0.00E+00
8GO:0090627: plant epidermal cell differentiation0.00E+00
9GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
10GO:0090279: regulation of calcium ion import0.00E+00
11GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
12GO:1905177: tracheary element differentiation0.00E+00
13GO:0090042: tubulin deacetylation0.00E+00
14GO:0071474: cellular hyperosmotic response0.00E+00
15GO:0032544: plastid translation6.84E-11
16GO:0009735: response to cytokinin4.77E-10
17GO:0015979: photosynthesis5.39E-10
18GO:0009409: response to cold1.48E-08
19GO:0006412: translation1.77E-08
20GO:0042254: ribosome biogenesis1.80E-07
21GO:0009773: photosynthetic electron transport in photosystem I3.73E-06
22GO:0005983: starch catabolic process5.14E-06
23GO:0030388: fructose 1,6-bisphosphate metabolic process1.06E-05
24GO:0015995: chlorophyll biosynthetic process2.71E-05
25GO:0006000: fructose metabolic process3.63E-05
26GO:0009631: cold acclimation4.85E-05
27GO:0005982: starch metabolic process6.78E-05
28GO:0019252: starch biosynthetic process9.86E-05
29GO:0019464: glycine decarboxylation via glycine cleavage system1.35E-04
30GO:0010021: amylopectin biosynthetic process1.35E-04
31GO:0006094: gluconeogenesis1.62E-04
32GO:0006461: protein complex assembly2.07E-04
33GO:0010027: thylakoid membrane organization2.15E-04
34GO:0010190: cytochrome b6f complex assembly2.93E-04
35GO:0045454: cell redox homeostasis3.02E-04
36GO:0080093: regulation of photorespiration4.92E-04
37GO:0031998: regulation of fatty acid beta-oxidation4.92E-04
38GO:0010028: xanthophyll cycle4.92E-04
39GO:0071588: hydrogen peroxide mediated signaling pathway4.92E-04
40GO:0000023: maltose metabolic process4.92E-04
41GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process4.92E-04
42GO:0005980: glycogen catabolic process4.92E-04
43GO:0043489: RNA stabilization4.92E-04
44GO:0009658: chloroplast organization5.42E-04
45GO:0009704: de-etiolation6.27E-04
46GO:0006002: fructose 6-phosphate metabolic process7.64E-04
47GO:0010206: photosystem II repair9.13E-04
48GO:0031648: protein destabilization1.06E-03
49GO:0016122: xanthophyll metabolic process1.06E-03
50GO:0010270: photosystem II oxygen evolving complex assembly1.06E-03
51GO:0051262: protein tetramerization1.06E-03
52GO:0005976: polysaccharide metabolic process1.06E-03
53GO:0090342: regulation of cell aging1.06E-03
54GO:0006782: protoporphyrinogen IX biosynthetic process1.25E-03
55GO:0016050: vesicle organization1.73E-03
56GO:0048281: inflorescence morphogenesis1.73E-03
57GO:0006518: peptide metabolic process1.73E-03
58GO:0010623: programmed cell death involved in cell development1.73E-03
59GO:0080055: low-affinity nitrate transport1.73E-03
60GO:0005986: sucrose biosynthetic process1.88E-03
61GO:0010020: chloroplast fission2.13E-03
62GO:0009817: defense response to fungus, incompatible interaction2.21E-03
63GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.51E-03
64GO:1902358: sulfate transmembrane transport2.51E-03
65GO:1901000: regulation of response to salt stress2.51E-03
66GO:0006241: CTP biosynthetic process2.51E-03
67GO:0010306: rhamnogalacturonan II biosynthetic process2.51E-03
68GO:0030100: regulation of endocytosis2.51E-03
69GO:0010731: protein glutathionylation2.51E-03
70GO:0006424: glutamyl-tRNA aminoacylation2.51E-03
71GO:0006165: nucleoside diphosphate phosphorylation2.51E-03
72GO:0006228: UTP biosynthetic process2.51E-03
73GO:0010148: transpiration2.51E-03
74GO:0010025: wax biosynthetic process2.66E-03
75GO:0042742: defense response to bacterium2.89E-03
76GO:0006289: nucleotide-excision repair2.95E-03
77GO:0034599: cellular response to oxidative stress3.16E-03
78GO:0007017: microtubule-based process3.26E-03
79GO:0010037: response to carbon dioxide3.38E-03
80GO:0006808: regulation of nitrogen utilization3.38E-03
81GO:0015976: carbon utilization3.38E-03
82GO:0009765: photosynthesis, light harvesting3.38E-03
83GO:0006109: regulation of carbohydrate metabolic process3.38E-03
84GO:0006183: GTP biosynthetic process3.38E-03
85GO:0045727: positive regulation of translation3.38E-03
86GO:0015994: chlorophyll metabolic process3.38E-03
87GO:2000122: negative regulation of stomatal complex development3.38E-03
88GO:0010600: regulation of auxin biosynthetic process3.38E-03
89GO:0006546: glycine catabolic process3.38E-03
90GO:0010508: positive regulation of autophagy3.38E-03
91GO:0051205: protein insertion into membrane3.38E-03
92GO:0061077: chaperone-mediated protein folding3.58E-03
93GO:0006631: fatty acid metabolic process3.73E-03
94GO:0006097: glyoxylate cycle4.33E-03
95GO:0032543: mitochondrial translation4.33E-03
96GO:0006544: glycine metabolic process4.33E-03
97GO:0045038: protein import into chloroplast thylakoid membrane4.33E-03
98GO:0006284: base-excision repair4.66E-03
99GO:0055114: oxidation-reduction process5.13E-03
100GO:0006563: L-serine metabolic process5.37E-03
101GO:0042549: photosystem II stabilization5.37E-03
102GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.37E-03
103GO:0000470: maturation of LSU-rRNA5.37E-03
104GO:0009913: epidermal cell differentiation5.37E-03
105GO:0006828: manganese ion transport5.37E-03
106GO:0006014: D-ribose metabolic process5.37E-03
107GO:0009585: red, far-red light phototransduction6.06E-03
108GO:0010019: chloroplast-nucleus signaling pathway6.48E-03
109GO:0009955: adaxial/abaxial pattern specification6.48E-03
110GO:0071470: cellular response to osmotic stress6.48E-03
111GO:0010244: response to low fluence blue light stimulus by blue low-fluence system6.48E-03
112GO:0042026: protein refolding6.48E-03
113GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.48E-03
114GO:0006458: 'de novo' protein folding6.48E-03
115GO:1901259: chloroplast rRNA processing6.48E-03
116GO:0000302: response to reactive oxygen species7.28E-03
117GO:0010103: stomatal complex morphogenesis7.66E-03
118GO:0010161: red light signaling pathway7.66E-03
119GO:0070370: cellular heat acclimation7.66E-03
120GO:0009645: response to low light intensity stimulus7.66E-03
121GO:0008272: sulfate transport7.66E-03
122GO:0030163: protein catabolic process8.31E-03
123GO:0019827: stem cell population maintenance8.92E-03
124GO:0010928: regulation of auxin mediated signaling pathway8.92E-03
125GO:0030091: protein repair8.92E-03
126GO:0008610: lipid biosynthetic process8.92E-03
127GO:0005978: glycogen biosynthetic process8.92E-03
128GO:0006353: DNA-templated transcription, termination8.92E-03
129GO:0017004: cytochrome complex assembly1.03E-02
130GO:0001558: regulation of cell growth1.03E-02
131GO:0009657: plastid organization1.03E-02
132GO:0051865: protein autoubiquitination1.17E-02
133GO:0006783: heme biosynthetic process1.17E-02
134GO:0006779: porphyrin-containing compound biosynthetic process1.31E-02
135GO:0035999: tetrahydrofolate interconversion1.31E-02
136GO:0042761: very long-chain fatty acid biosynthetic process1.31E-02
137GO:0048829: root cap development1.46E-02
138GO:0031627: telomeric loop formation1.46E-02
139GO:0006816: calcium ion transport1.62E-02
140GO:0043085: positive regulation of catalytic activity1.62E-02
141GO:0006415: translational termination1.62E-02
142GO:0009750: response to fructose1.62E-02
143GO:0016485: protein processing1.62E-02
144GO:0007623: circadian rhythm1.91E-02
145GO:0010628: positive regulation of gene expression1.96E-02
146GO:0010102: lateral root morphogenesis1.96E-02
147GO:0006108: malate metabolic process1.96E-02
148GO:0006006: glucose metabolic process1.96E-02
149GO:0005975: carbohydrate metabolic process1.97E-02
150GO:0009266: response to temperature stimulus2.13E-02
151GO:0010143: cutin biosynthetic process2.13E-02
152GO:0010207: photosystem II assembly2.13E-02
153GO:0019253: reductive pentose-phosphate cycle2.13E-02
154GO:0006979: response to oxidative stress2.23E-02
155GO:0005985: sucrose metabolic process2.31E-02
156GO:0019762: glucosinolate catabolic process2.50E-02
157GO:0008152: metabolic process2.53E-02
158GO:0009944: polarity specification of adaxial/abaxial axis2.69E-02
159GO:0000027: ribosomal large subunit assembly2.69E-02
160GO:0051017: actin filament bundle assembly2.69E-02
161GO:0009664: plant-type cell wall organization2.85E-02
162GO:0051302: regulation of cell division2.89E-02
163GO:0016575: histone deacetylation2.89E-02
164GO:0006418: tRNA aminoacylation for protein translation2.89E-02
165GO:0009768: photosynthesis, light harvesting in photosystem I2.89E-02
166GO:0019915: lipid storage3.09E-02
167GO:0010017: red or far-red light signaling pathway3.29E-02
168GO:0016226: iron-sulfur cluster assembly3.29E-02
169GO:2000022: regulation of jasmonic acid mediated signaling pathway3.29E-02
170GO:0035428: hexose transmembrane transport3.29E-02
171GO:0001944: vasculature development3.50E-02
172GO:0009686: gibberellin biosynthetic process3.50E-02
173GO:0009411: response to UV3.50E-02
174GO:0006096: glycolytic process3.62E-02
175GO:0043086: negative regulation of catalytic activity3.62E-02
176GO:0010089: xylem development3.72E-02
177GO:0006508: proteolysis3.78E-02
178GO:0070417: cellular response to cold3.94E-02
179GO:0042335: cuticle development4.16E-02
180GO:0000413: protein peptidyl-prolyl isomerization4.16E-02
181GO:0048868: pollen tube development4.39E-02
182GO:0046323: glucose import4.39E-02
183GO:0006662: glycerol ether metabolic process4.39E-02
184GO:0048825: cotyledon development4.85E-02
185GO:0046686: response to cadmium ion4.96E-02
RankGO TermAdjusted P value
1GO:0009899: ent-kaurene synthase activity0.00E+00
2GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
3GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
4GO:0046422: violaxanthin de-epoxidase activity0.00E+00
5GO:0004134: 4-alpha-glucanotransferase activity0.00E+00
6GO:0051721: protein phosphatase 2A binding0.00E+00
7GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
8GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
9GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
10GO:0043014: alpha-tubulin binding0.00E+00
11GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
12GO:0042903: tubulin deacetylase activity0.00E+00
13GO:0004822: isoleucine-tRNA ligase activity0.00E+00
14GO:0019843: rRNA binding2.18E-17
15GO:0003735: structural constituent of ribosome1.19E-10
16GO:0016209: antioxidant activity4.48E-07
17GO:0005528: FK506 binding5.92E-07
18GO:0008266: poly(U) RNA binding9.08E-06
19GO:0033201: alpha-1,4-glucan synthase activity1.06E-05
20GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.06E-05
21GO:0051920: peroxiredoxin activity1.15E-05
22GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.49E-05
23GO:0004373: glycogen (starch) synthase activity3.63E-05
24GO:0016851: magnesium chelatase activity7.78E-05
25GO:0009011: starch synthase activity1.35E-04
26GO:0004130: cytochrome-c peroxidase activity2.93E-04
27GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.92E-04
28GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.92E-04
29GO:0005227: calcium activated cation channel activity4.92E-04
30GO:0008184: glycogen phosphorylase activity4.92E-04
31GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity4.92E-04
32GO:0004856: xylulokinase activity4.92E-04
33GO:0004645: phosphorylase activity4.92E-04
34GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity4.92E-04
35GO:0019203: carbohydrate phosphatase activity4.92E-04
36GO:0004853: uroporphyrinogen decarboxylase activity4.92E-04
37GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity4.92E-04
38GO:0016868: intramolecular transferase activity, phosphotransferases1.06E-03
39GO:0010297: heteropolysaccharide binding1.06E-03
40GO:0018708: thiol S-methyltransferase activity1.06E-03
41GO:0003844: 1,4-alpha-glucan branching enzyme activity1.06E-03
42GO:0008967: phosphoglycolate phosphatase activity1.06E-03
43GO:0044183: protein binding involved in protein folding1.45E-03
44GO:0047372: acylglycerol lipase activity1.45E-03
45GO:0080054: low-affinity nitrate transmembrane transporter activity1.73E-03
46GO:0004324: ferredoxin-NADP+ reductase activity1.73E-03
47GO:0043169: cation binding1.73E-03
48GO:0005504: fatty acid binding1.73E-03
49GO:0017150: tRNA dihydrouridine synthase activity1.73E-03
50GO:0050734: hydroxycinnamoyltransferase activity1.73E-03
51GO:0002161: aminoacyl-tRNA editing activity1.73E-03
52GO:0004148: dihydrolipoyl dehydrogenase activity1.73E-03
53GO:0017108: 5'-flap endonuclease activity1.73E-03
54GO:0045174: glutathione dehydrogenase (ascorbate) activity1.73E-03
55GO:0030267: glyoxylate reductase (NADP) activity1.73E-03
56GO:0004222: metalloendopeptidase activity2.50E-03
57GO:0043023: ribosomal large subunit binding2.51E-03
58GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.51E-03
59GO:0004375: glycine dehydrogenase (decarboxylating) activity2.51E-03
60GO:0048487: beta-tubulin binding2.51E-03
61GO:0016149: translation release factor activity, codon specific2.51E-03
62GO:0004550: nucleoside diphosphate kinase activity2.51E-03
63GO:0004252: serine-type endopeptidase activity3.24E-03
64GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.38E-03
65GO:0019104: DNA N-glycosylase activity3.38E-03
66GO:0045430: chalcone isomerase activity3.38E-03
67GO:0004506: squalene monooxygenase activity3.38E-03
68GO:0019199: transmembrane receptor protein kinase activity3.38E-03
69GO:0042277: peptide binding3.38E-03
70GO:0008725: DNA-3-methyladenine glycosylase activity4.33E-03
71GO:0004372: glycine hydroxymethyltransferase activity4.33E-03
72GO:0003959: NADPH dehydrogenase activity4.33E-03
73GO:0045300: acyl-[acyl-carrier-protein] desaturase activity4.33E-03
74GO:0016773: phosphotransferase activity, alcohol group as acceptor4.33E-03
75GO:0004040: amidase activity4.33E-03
76GO:0043621: protein self-association4.57E-03
77GO:0016615: malate dehydrogenase activity5.37E-03
78GO:2001070: starch binding5.37E-03
79GO:0004332: fructose-bisphosphate aldolase activity5.37E-03
80GO:0016688: L-ascorbate peroxidase activity5.37E-03
81GO:0016491: oxidoreductase activity5.55E-03
82GO:0050662: coenzyme binding6.34E-03
83GO:0033743: peptide-methionine (R)-S-oxide reductase activity6.48E-03
84GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.48E-03
85GO:0004602: glutathione peroxidase activity6.48E-03
86GO:0004747: ribokinase activity6.48E-03
87GO:0030060: L-malate dehydrogenase activity6.48E-03
88GO:0005261: cation channel activity6.48E-03
89GO:0048038: quinone binding7.28E-03
90GO:0004620: phospholipase activity7.66E-03
91GO:0004601: peroxidase activity8.79E-03
92GO:0004033: aldo-keto reductase (NADP) activity8.92E-03
93GO:0008865: fructokinase activity8.92E-03
94GO:0005200: structural constituent of cytoskeleton9.40E-03
95GO:0008271: secondary active sulfate transmembrane transporter activity1.03E-02
96GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.03E-02
97GO:0003747: translation release factor activity1.17E-02
98GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.17E-02
99GO:0005384: manganese ion transmembrane transporter activity1.31E-02
100GO:0008236: serine-type peptidase activity1.32E-02
101GO:0030170: pyridoxal phosphate binding1.45E-02
102GO:0030234: enzyme regulator activity1.46E-02
103GO:0008047: enzyme activator activity1.46E-02
104GO:0003691: double-stranded telomeric DNA binding1.62E-02
105GO:0015386: potassium:proton antiporter activity1.62E-02
106GO:0015116: sulfate transmembrane transporter activity1.79E-02
107GO:0000049: tRNA binding1.79E-02
108GO:0004089: carbonate dehydratase activity1.96E-02
109GO:0015095: magnesium ion transmembrane transporter activity1.96E-02
110GO:0004565: beta-galactosidase activity1.96E-02
111GO:0004022: alcohol dehydrogenase (NAD) activity1.96E-02
112GO:0004364: glutathione transferase activity2.18E-02
113GO:0003924: GTPase activity2.19E-02
114GO:0004190: aspartic-type endopeptidase activity2.31E-02
115GO:0031409: pigment binding2.50E-02
116GO:0005198: structural molecule activity2.56E-02
117GO:0051536: iron-sulfur cluster binding2.69E-02
118GO:0004857: enzyme inhibitor activity2.69E-02
119GO:0004407: histone deacetylase activity2.69E-02
120GO:0015079: potassium ion transmembrane transporter activity2.89E-02
121GO:0008168: methyltransferase activity3.15E-02
122GO:0047134: protein-disulfide reductase activity3.94E-02
123GO:0004812: aminoacyl-tRNA ligase activity3.94E-02
124GO:0016787: hydrolase activity3.96E-02
125GO:0005199: structural constituent of cell wall4.39E-02
126GO:0001085: RNA polymerase II transcription factor binding4.39E-02
127GO:0004791: thioredoxin-disulfide reductase activity4.62E-02
128GO:0005355: glucose transmembrane transporter activity4.62E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
3GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
4GO:0033557: Slx1-Slx4 complex0.00E+00
5GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
6GO:0044391: ribosomal subunit0.00E+00
7GO:0009507: chloroplast1.30E-68
8GO:0009570: chloroplast stroma4.52E-61
9GO:0009941: chloroplast envelope3.11E-50
10GO:0009534: chloroplast thylakoid1.16E-43
11GO:0009535: chloroplast thylakoid membrane1.13E-35
12GO:0009579: thylakoid5.02E-28
13GO:0009543: chloroplast thylakoid lumen2.18E-17
14GO:0031977: thylakoid lumen9.08E-13
15GO:0005840: ribosome3.09E-11
16GO:0010287: plastoglobule1.60E-10
17GO:0009501: amyloplast4.48E-07
18GO:0010319: stromule6.46E-07
19GO:0030095: chloroplast photosystem II9.08E-06
20GO:0009533: chloroplast stromal thylakoid1.82E-05
21GO:0010007: magnesium chelatase complex3.63E-05
22GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.15E-05
23GO:0009508: plastid chromosome1.62E-04
24GO:0009295: nucleoid1.76E-04
25GO:0009706: chloroplast inner membrane3.85E-04
26GO:0009538: photosystem I reaction center6.27E-04
27GO:0016020: membrane7.73E-04
28GO:0045298: tubulin complex9.13E-04
29GO:0048046: apoplast9.17E-04
30GO:0031357: integral component of chloroplast inner membrane1.06E-03
31GO:0030093: chloroplast photosystem I1.06E-03
32GO:0000311: plastid large ribosomal subunit1.66E-03
33GO:0009536: plastid1.69E-03
34GO:0005960: glycine cleavage complex2.51E-03
35GO:0031969: chloroplast membrane3.24E-03
36GO:0009654: photosystem II oxygen evolving complex3.26E-03
37GO:0055035: plastid thylakoid membrane4.33E-03
38GO:0005798: Golgi-associated vesicle5.37E-03
39GO:0009840: chloroplastic endopeptidase Clp complex6.48E-03
40GO:0009523: photosystem II6.80E-03
41GO:0019898: extrinsic component of membrane6.80E-03
42GO:0000783: nuclear telomere cap complex1.03E-02
43GO:0005763: mitochondrial small ribosomal subunit1.17E-02
44GO:0042644: chloroplast nucleoid1.17E-02
45GO:0015934: large ribosomal subunit1.60E-02
46GO:0000312: plastid small ribosomal subunit2.13E-02
47GO:0030076: light-harvesting complex2.31E-02
48GO:0005769: early endosome2.50E-02
49GO:0042651: thylakoid membrane2.89E-02
50GO:0015935: small ribosomal subunit3.09E-02
51GO:0009532: plastid stroma3.09E-02
52GO:0015629: actin cytoskeleton3.50E-02
53GO:0022625: cytosolic large ribosomal subunit4.58E-02
54GO:0009522: photosystem I4.62E-02
55GO:0022626: cytosolic ribosome4.73E-02
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Gene type



Gene DE type