Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G60770

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
2GO:0044843: cell cycle G1/S phase transition0.00E+00
3GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
4GO:0009264: deoxyribonucleotide catabolic process0.00E+00
5GO:0034050: host programmed cell death induced by symbiont0.00E+00
6GO:0046487: glyoxylate metabolic process0.00E+00
7GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
8GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
9GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation0.00E+00
10GO:0090239: regulation of histone H4 acetylation0.00E+00
11GO:0006412: translation8.75E-137
12GO:0042254: ribosome biogenesis4.83E-54
13GO:0000027: ribosomal large subunit assembly3.61E-13
14GO:0006626: protein targeting to mitochondrion1.22E-08
15GO:0009735: response to cytokinin1.06E-07
16GO:0006413: translational initiation1.47E-07
17GO:0000028: ribosomal small subunit assembly1.34E-06
18GO:0045901: positive regulation of translational elongation1.97E-05
19GO:0006452: translational frameshifting1.97E-05
20GO:0009967: positive regulation of signal transduction1.97E-05
21GO:0045905: positive regulation of translational termination1.97E-05
22GO:0009955: adaxial/abaxial pattern specification2.58E-05
23GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c3.99E-05
24GO:1902626: assembly of large subunit precursor of preribosome6.44E-05
25GO:0002181: cytoplasmic translation6.44E-05
26GO:0006364: rRNA processing7.91E-05
27GO:0046686: response to cadmium ion8.92E-05
28GO:0042274: ribosomal small subunit biogenesis2.28E-04
29GO:0006820: anion transport2.65E-04
30GO:0097428: protein maturation by iron-sulfur cluster transfer3.42E-04
31GO:0015031: protein transport3.80E-04
32GO:0030150: protein import into mitochondrial matrix5.77E-04
33GO:0009554: megasporogenesis6.32E-04
34GO:0030490: maturation of SSU-rRNA6.78E-04
35GO:0010365: positive regulation of ethylene biosynthetic process6.78E-04
36GO:0006434: seryl-tRNA aminoacylation6.78E-04
37GO:0000494: box C/D snoRNA 3'-end processing6.78E-04
38GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.78E-04
39GO:1901430: positive regulation of syringal lignin biosynthetic process6.78E-04
40GO:0032365: intracellular lipid transport6.78E-04
41GO:0006407: rRNA export from nucleus6.78E-04
42GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.78E-04
43GO:1901349: glucosinolate transport6.78E-04
44GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process6.78E-04
45GO:0019877: diaminopimelate biosynthetic process6.78E-04
46GO:0090449: phloem glucosinolate loading6.78E-04
47GO:0015801: aromatic amino acid transport6.78E-04
48GO:1990258: histone glutamine methylation6.78E-04
49GO:1990542: mitochondrial transmembrane transport6.78E-04
50GO:0009651: response to salt stress7.11E-04
51GO:0009793: embryo development ending in seed dormancy1.07E-03
52GO:0006123: mitochondrial electron transport, cytochrome c to oxygen1.46E-03
53GO:0048569: post-embryonic animal organ development1.46E-03
54GO:0043981: histone H4-K5 acetylation1.46E-03
55GO:0015786: UDP-glucose transport1.46E-03
56GO:0051788: response to misfolded protein1.46E-03
57GO:0045859: regulation of protein kinase activity1.46E-03
58GO:0009156: ribonucleoside monophosphate biosynthetic process1.46E-03
59GO:0031204: posttranslational protein targeting to membrane, translocation1.46E-03
60GO:0008283: cell proliferation1.52E-03
61GO:0010162: seed dormancy process2.03E-03
62GO:0006913: nucleocytoplasmic transport2.35E-03
63GO:0015783: GDP-fucose transport2.41E-03
64GO:0010476: gibberellin mediated signaling pathway2.41E-03
65GO:0042256: mature ribosome assembly2.41E-03
66GO:0045039: protein import into mitochondrial inner membrane2.41E-03
67GO:0032940: secretion by cell2.41E-03
68GO:0009150: purine ribonucleotide metabolic process2.41E-03
69GO:0008652: cellular amino acid biosynthetic process2.41E-03
70GO:0048467: gynoecium development3.46E-03
71GO:0033617: mitochondrial respiratory chain complex IV assembly3.51E-03
72GO:0006166: purine ribonucleoside salvage3.51E-03
73GO:0070301: cellular response to hydrogen peroxide3.51E-03
74GO:0009647: skotomorphogenesis3.51E-03
75GO:0006241: CTP biosynthetic process3.51E-03
76GO:0072334: UDP-galactose transmembrane transport3.51E-03
77GO:0010971: positive regulation of G2/M transition of mitotic cell cycle3.51E-03
78GO:0032981: mitochondrial respiratory chain complex I assembly3.51E-03
79GO:0006168: adenine salvage3.51E-03
80GO:0006165: nucleoside diphosphate phosphorylation3.51E-03
81GO:0006228: UTP biosynthetic process3.51E-03
82GO:0006164: purine nucleotide biosynthetic process3.51E-03
83GO:0009855: determination of bilateral symmetry3.51E-03
84GO:0001676: long-chain fatty acid metabolic process3.51E-03
85GO:0046513: ceramide biosynthetic process3.51E-03
86GO:0009413: response to flooding3.51E-03
87GO:0051781: positive regulation of cell division4.74E-03
88GO:0010483: pollen tube reception4.74E-03
89GO:0006183: GTP biosynthetic process4.74E-03
90GO:0010363: regulation of plant-type hypersensitive response4.74E-03
91GO:0042273: ribosomal large subunit biogenesis4.74E-03
92GO:0051205: protein insertion into membrane4.74E-03
93GO:0009165: nucleotide biosynthetic process4.74E-03
94GO:0006487: protein N-linked glycosylation4.81E-03
95GO:0009116: nucleoside metabolic process4.81E-03
96GO:0000398: mRNA splicing, via spliceosome5.16E-03
97GO:0061077: chaperone-mediated protein folding5.85E-03
98GO:0007029: endoplasmic reticulum organization6.09E-03
99GO:1902183: regulation of shoot apical meristem development6.09E-03
100GO:0044209: AMP salvage6.09E-03
101GO:0045116: protein neddylation6.09E-03
102GO:0031167: rRNA methylation6.09E-03
103GO:0019408: dolichol biosynthetic process6.09E-03
104GO:0018279: protein N-linked glycosylation via asparagine6.09E-03
105GO:0006461: protein complex assembly6.09E-03
106GO:0007005: mitochondrion organization6.41E-03
107GO:0071215: cellular response to abscisic acid stimulus7.01E-03
108GO:0040007: growth7.01E-03
109GO:0042744: hydrogen peroxide catabolic process7.13E-03
110GO:0016070: RNA metabolic process7.56E-03
111GO:0000470: maturation of LSU-rRNA7.56E-03
112GO:0043248: proteasome assembly7.56E-03
113GO:0045040: protein import into mitochondrial outer membrane7.56E-03
114GO:0006606: protein import into nucleus8.95E-03
115GO:0008033: tRNA processing8.95E-03
116GO:0009648: photoperiodism9.15E-03
117GO:1901001: negative regulation of response to salt stress9.15E-03
118GO:0006458: 'de novo' protein folding9.15E-03
119GO:0000054: ribosomal subunit export from nucleus9.15E-03
120GO:0000245: spliceosomal complex assembly9.15E-03
121GO:0048528: post-embryonic root development1.09E-02
122GO:0080186: developmental vegetative growth1.09E-02
123GO:0009645: response to low light intensity stimulus1.09E-02
124GO:0009749: response to glucose1.12E-02
125GO:0051603: proteolysis involved in cellular protein catabolic process1.19E-02
126GO:0000302: response to reactive oxygen species1.20E-02
127GO:0006869: lipid transport1.24E-02
128GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline1.27E-02
129GO:0009690: cytokinin metabolic process1.27E-02
130GO:0006605: protein targeting1.27E-02
131GO:0031540: regulation of anthocyanin biosynthetic process1.27E-02
132GO:0022900: electron transport chain1.46E-02
133GO:0001558: regulation of cell growth1.46E-02
134GO:0006367: transcription initiation from RNA polymerase II promoter1.46E-02
135GO:0001510: RNA methylation1.46E-02
136GO:0010204: defense response signaling pathway, resistance gene-independent1.46E-02
137GO:0030968: endoplasmic reticulum unfolded protein response1.46E-02
138GO:0043562: cellular response to nitrogen levels1.46E-02
139GO:0015780: nucleotide-sugar transport1.66E-02
140GO:0098656: anion transmembrane transport1.66E-02
141GO:0009245: lipid A biosynthetic process1.66E-02
142GO:0006189: 'de novo' IMP biosynthetic process1.66E-02
143GO:0000387: spliceosomal snRNP assembly1.86E-02
144GO:0042761: very long-chain fatty acid biosynthetic process1.86E-02
145GO:0010449: root meristem growth1.86E-02
146GO:0009870: defense response signaling pathway, resistance gene-dependent2.08E-02
147GO:0030422: production of siRNA involved in RNA interference2.08E-02
148GO:0010015: root morphogenesis2.31E-02
149GO:0009089: lysine biosynthetic process via diaminopimelate2.31E-02
150GO:0009682: induced systemic resistance2.31E-02
151GO:0006879: cellular iron ion homeostasis2.31E-02
152GO:0015770: sucrose transport2.31E-02
153GO:0048229: gametophyte development2.31E-02
154GO:0006811: ion transport2.51E-02
155GO:0071365: cellular response to auxin stimulus2.54E-02
156GO:0006790: sulfur compound metabolic process2.54E-02
157GO:0012501: programmed cell death2.54E-02
158GO:0006890: retrograde vesicle-mediated transport, Golgi to ER2.54E-02
159GO:0009845: seed germination2.62E-02
160GO:0010043: response to zinc ion2.64E-02
161GO:0010102: lateral root morphogenesis2.79E-02
162GO:2000028: regulation of photoperiodism, flowering2.79E-02
163GO:0002237: response to molecule of bacterial origin3.04E-02
164GO:0006446: regulation of translational initiation3.04E-02
165GO:0006414: translational elongation3.13E-02
166GO:0010167: response to nitrate3.29E-02
167GO:0090351: seedling development3.29E-02
168GO:0009944: polarity specification of adaxial/abaxial axis3.83E-02
169GO:0006289: nucleotide-excision repair3.83E-02
170GO:0009644: response to high light intensity4.02E-02
171GO:0051302: regulation of cell division4.11E-02
172GO:0009965: leaf morphogenesis4.18E-02
173GO:0009409: response to cold4.26E-02
174GO:0048511: rhythmic process4.40E-02
175GO:0010431: seed maturation4.40E-02
176GO:0003333: amino acid transmembrane transport4.40E-02
177GO:0015992: proton transport4.40E-02
178GO:0051260: protein homooligomerization4.40E-02
179GO:0008380: RNA splicing4.41E-02
180GO:0009617: response to bacterium4.41E-02
181GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process4.50E-02
182GO:0016226: iron-sulfur cluster assembly4.69E-02
183GO:0009294: DNA mediated transformation4.98E-02
RankGO TermAdjusted P value
1GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
2GO:0016881: acid-amino acid ligase activity0.00E+00
3GO:0052873: FMN reductase (NADPH) activity0.00E+00
4GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
5GO:0008752: FMN reductase activity0.00E+00
6GO:0003735: structural constituent of ribosome6.91E-166
7GO:0003729: mRNA binding4.96E-30
8GO:0019843: rRNA binding5.01E-13
9GO:0003743: translation initiation factor activity4.29E-07
10GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity5.48E-07
11GO:0003746: translation elongation factor activity1.29E-06
12GO:0015288: porin activity1.34E-06
13GO:0005078: MAP-kinase scaffold activity1.97E-05
14GO:0043022: ribosome binding5.80E-05
15GO:0003723: RNA binding7.70E-05
16GO:0008308: voltage-gated anion channel activity8.05E-05
17GO:0008097: 5S rRNA binding1.34E-04
18GO:0001055: RNA polymerase II activity1.40E-04
19GO:0001054: RNA polymerase I activity2.18E-04
20GO:0001056: RNA polymerase III activity2.65E-04
21GO:0035614: snRNA stem-loop binding6.78E-04
22GO:0008840: 4-hydroxy-tetrahydrodipicolinate synthase6.78E-04
23GO:0000824: inositol tetrakisphosphate 3-kinase activity6.78E-04
24GO:0047326: inositol tetrakisphosphate 5-kinase activity6.78E-04
25GO:0015157: oligosaccharide transmembrane transporter activity6.78E-04
26GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity6.78E-04
27GO:0004828: serine-tRNA ligase activity6.78E-04
28GO:0004679: AMP-activated protein kinase activity6.78E-04
29GO:0005080: protein kinase C binding6.78E-04
30GO:0090448: glucosinolate:proton symporter activity6.78E-04
31GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity6.78E-04
32GO:0004128: cytochrome-b5 reductase activity, acting on NAD(P)H6.78E-04
33GO:1990259: histone-glutamine methyltransferase activity6.78E-04
34GO:0004298: threonine-type endopeptidase activity7.42E-04
35GO:0008121: ubiquinol-cytochrome-c reductase activity8.07E-04
36GO:0004618: phosphoglycerate kinase activity1.46E-03
37GO:0019781: NEDD8 activating enzyme activity1.46E-03
38GO:0015173: aromatic amino acid transmembrane transporter activity1.46E-03
39GO:0004750: ribulose-phosphate 3-epimerase activity1.46E-03
40GO:0032934: sterol binding1.46E-03
41GO:0030619: U1 snRNA binding1.46E-03
42GO:0004634: phosphopyruvate hydratase activity1.46E-03
43GO:0036455: iron-sulfur transferase activity1.46E-03
44GO:0050291: sphingosine N-acyltransferase activity1.46E-03
45GO:0000166: nucleotide binding1.74E-03
46GO:0044183: protein binding involved in protein folding2.35E-03
47GO:0005457: GDP-fucose transmembrane transporter activity2.41E-03
48GO:0015462: ATPase-coupled protein transmembrane transporter activity2.41E-03
49GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.41E-03
50GO:0032947: protein complex scaffold2.41E-03
51GO:0008649: rRNA methyltransferase activity2.41E-03
52GO:0008253: 5'-nucleotidase activity2.41E-03
53GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.41E-03
54GO:0017077: oxidative phosphorylation uncoupler activity3.51E-03
55GO:0004749: ribose phosphate diphosphokinase activity3.51E-03
56GO:0019201: nucleotide kinase activity3.51E-03
57GO:0003999: adenine phosphoribosyltransferase activity3.51E-03
58GO:0005460: UDP-glucose transmembrane transporter activity3.51E-03
59GO:0004550: nucleoside diphosphate kinase activity3.51E-03
60GO:0047627: adenylylsulfatase activity3.51E-03
61GO:0070628: proteasome binding4.74E-03
62GO:0005086: ARF guanyl-nucleotide exchange factor activity4.74E-03
63GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances4.74E-03
64GO:0016004: phospholipase activator activity4.74E-03
65GO:0004407: histone deacetylase activity4.81E-03
66GO:0004601: peroxidase activity5.28E-03
67GO:0005459: UDP-galactose transmembrane transporter activity6.09E-03
68GO:0008641: small protein activating enzyme activity6.09E-03
69GO:0045547: dehydrodolichyl diphosphate synthase activity6.09E-03
70GO:0005275: amine transmembrane transporter activity6.09E-03
71GO:0008198: ferrous iron binding6.09E-03
72GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity6.09E-03
73GO:0004040: amidase activity6.09E-03
74GO:0008233: peptidase activity7.47E-03
75GO:0031593: polyubiquitin binding7.56E-03
76GO:0031177: phosphopantetheine binding7.56E-03
77GO:0004130: cytochrome-c peroxidase activity7.56E-03
78GO:0016688: L-ascorbate peroxidase activity7.56E-03
79GO:0051920: peroxiredoxin activity9.15E-03
80GO:0004017: adenylate kinase activity9.15E-03
81GO:0000035: acyl binding9.15E-03
82GO:0102391: decanoate--CoA ligase activity9.15E-03
83GO:0019887: protein kinase regulator activity9.15E-03
84GO:0004656: procollagen-proline 4-dioxygenase activity9.15E-03
85GO:0010181: FMN binding1.04E-02
86GO:0005338: nucleotide-sugar transmembrane transporter activity1.09E-02
87GO:0008235: metalloexopeptidase activity1.09E-02
88GO:0030515: snoRNA binding1.09E-02
89GO:0004467: long-chain fatty acid-CoA ligase activity1.09E-02
90GO:0016209: antioxidant activity1.27E-02
91GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.27E-02
92GO:0008135: translation factor activity, RNA binding1.46E-02
93GO:0045309: protein phosphorylated amino acid binding1.86E-02
94GO:0005515: protein binding2.01E-02
95GO:0008515: sucrose transmembrane transporter activity2.31E-02
96GO:0019904: protein domain specific binding2.31E-02
97GO:0008289: lipid binding2.66E-02
98GO:0015266: protein channel activity2.79E-02
99GO:0051119: sugar transmembrane transporter activity3.29E-02
100GO:0051539: 4 iron, 4 sulfur cluster binding3.29E-02
101GO:0005525: GTP binding3.75E-02
102GO:0051536: iron-sulfur cluster binding3.83E-02
103GO:0031418: L-ascorbic acid binding3.83E-02
104GO:0043130: ubiquitin binding3.83E-02
105GO:0005528: FK506 binding3.83E-02
106GO:0051087: chaperone binding4.11E-02
107GO:0005216: ion channel activity4.11E-02
108GO:0005198: structural molecule activity4.18E-02
109GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.34E-02
110GO:0036459: thiol-dependent ubiquitinyl hydrolase activity4.40E-02
RankGO TermAdjusted P value
1GO:0005784: Sec61 translocon complex0.00E+00
2GO:0005674: transcription factor TFIIF complex0.00E+00
3GO:0031205: endoplasmic reticulum Sec complex0.00E+00
4GO:0005832: chaperonin-containing T-complex0.00E+00
5GO:0022625: cytosolic large ribosomal subunit5.45E-114
6GO:0005840: ribosome6.65E-113
7GO:0022626: cytosolic ribosome3.92E-100
8GO:0022627: cytosolic small ribosomal subunit3.12E-71
9GO:0005829: cytosol1.21E-41
10GO:0005737: cytoplasm5.01E-39
11GO:0005730: nucleolus5.22E-36
12GO:0009506: plasmodesma5.24E-33
13GO:0005774: vacuolar membrane2.51E-21
14GO:0015934: large ribosomal subunit1.23E-18
15GO:0015935: small ribosomal subunit1.07E-12
16GO:0005773: vacuole1.29E-12
17GO:0016020: membrane2.68E-12
18GO:0005618: cell wall1.19E-09
19GO:0005741: mitochondrial outer membrane1.20E-07
20GO:0009507: chloroplast4.44E-07
21GO:0005886: plasma membrane1.07E-06
22GO:0046930: pore complex2.22E-06
23GO:0005665: DNA-directed RNA polymerase II, core complex1.44E-05
24GO:0005758: mitochondrial intermembrane space4.88E-05
25GO:0005853: eukaryotic translation elongation factor 1 complex6.44E-05
26GO:0000502: proteasome complex7.91E-05
27GO:0005742: mitochondrial outer membrane translocase complex8.05E-05
28GO:0005736: DNA-directed RNA polymerase I complex1.08E-04
29GO:0005666: DNA-directed RNA polymerase III complex1.40E-04
30GO:0000418: DNA-directed RNA polymerase IV complex1.76E-04
31GO:0005852: eukaryotic translation initiation factor 3 complex2.18E-04
32GO:0005743: mitochondrial inner membrane3.59E-04
33GO:0000419: DNA-directed RNA polymerase V complex5.04E-04
34GO:0005681: spliceosomal complex6.66E-04
35GO:0030686: 90S preribosome6.78E-04
36GO:0005839: proteasome core complex7.42E-04
37GO:0005834: heterotrimeric G-protein complex7.46E-04
38GO:0031359: integral component of chloroplast outer membrane8.07E-04
39GO:0005744: mitochondrial inner membrane presequence translocase complex1.03E-03
40GO:0005732: small nucleolar ribonucleoprotein complex1.08E-03
41GO:0000015: phosphopyruvate hydratase complex1.46E-03
42GO:0015030: Cajal body1.73E-03
43GO:0005740: mitochondrial envelope2.03E-03
44GO:0046861: glyoxysomal membrane2.41E-03
45GO:0019013: viral nucleocapsid3.06E-03
46GO:0005750: mitochondrial respiratory chain complex III3.46E-03
47GO:0016471: vacuolar proton-transporting V-type ATPase complex4.74E-03
48GO:0070469: respiratory chain5.32E-03
49GO:0008250: oligosaccharyltransferase complex6.09E-03
50GO:0005622: intracellular6.84E-03
51GO:0031428: box C/D snoRNP complex7.56E-03
52GO:0005851: eukaryotic translation initiation factor 2B complex7.56E-03
53GO:0000974: Prp19 complex7.56E-03
54GO:0016272: prefoldin complex9.15E-03
55GO:0005635: nuclear envelope1.24E-02
56GO:0005688: U6 snRNP1.27E-02
57GO:0009514: glyoxysome1.46E-02
58GO:0046540: U4/U6 x U5 tri-snRNP complex1.46E-02
59GO:0005763: mitochondrial small ribosomal subunit1.66E-02
60GO:0005685: U1 snRNP1.66E-02
61GO:0030529: intracellular ribonucleoprotein complex1.74E-02
62GO:0071011: precatalytic spliceosome1.86E-02
63GO:0009707: chloroplast outer membrane2.28E-02
64GO:0071013: catalytic step 2 spliceosome2.31E-02
65GO:0008541: proteasome regulatory particle, lid subcomplex2.31E-02
66GO:0032040: small-subunit processome2.54E-02
67GO:0005759: mitochondrial matrix3.15E-02
68GO:0005783: endoplasmic reticulum3.40E-02
69GO:0005769: early endosome3.56E-02
70GO:0005777: peroxisome4.98E-02
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Gene type



Gene DE type