co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G60640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0048870: cell motility	0.00E+00
2	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
3	GO:0051776: detection of redox state	0.00E+00
4	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	7.74E-05
5	GO:0016569: covalent chromatin modification	1.62E-04
6	GO:0009240: isopentenyl diphosphate biosynthetic process	1.73E-04
7	GO:2000025: regulation of leaf formation	1.73E-04
8	GO:0006325: chromatin organization	2.85E-04
9	GO:0045454: cell redox homeostasis	2.91E-04
10	GO:0007163: establishment or maintenance of cell polarity	3.92E-04
11	GO:0006432: phenylalanyl-tRNA aminoacylation	3.92E-04
12	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	3.92E-04
13	GO:0051252: regulation of RNA metabolic process	3.92E-04
14	GO:0045905: positive regulation of translational termination	3.92E-04
15	GO:0034243: regulation of transcription elongation from RNA polymerase II promoter	3.92E-04
16	GO:0050992: dimethylallyl diphosphate biosynthetic process	3.92E-04
17	GO:0045901: positive regulation of translational elongation	3.92E-04
18	GO:0006452: translational frameshifting	3.92E-04
19	GO:0009853: photorespiration	4.38E-04
20	GO:0046417: chorismate metabolic process	6.40E-04
21	GO:0015940: pantothenate biosynthetic process	6.40E-04
22	GO:0045793: positive regulation of cell size	6.40E-04
23	GO:0006760: folic acid-containing compound metabolic process	6.40E-04
24	GO:0090708: specification of plant organ axis polarity	6.40E-04
25	GO:0032786: positive regulation of DNA-templated transcription, elongation	6.40E-04
26	GO:0008333: endosome to lysosome transport	6.40E-04
27	GO:0006406: mRNA export from nucleus	6.71E-04
28	GO:0006487: protein N-linked glycosylation	6.71E-04
29	GO:1901332: negative regulation of lateral root development	9.13E-04
30	GO:0032877: positive regulation of DNA endoreduplication	9.13E-04
31	GO:0006107: oxaloacetate metabolic process	9.13E-04
32	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	9.13E-04
33	GO:0035067: negative regulation of histone acetylation	9.13E-04
34	GO:0031507: heterochromatin assembly	1.21E-03
35	GO:0010109: regulation of photosynthesis	1.21E-03
36	GO:0051781: positive regulation of cell division	1.21E-03
37	GO:0009943: adaxial/abaxial axis specification	1.21E-03
38	GO:0002098: tRNA wobble uridine modification	1.21E-03
39	GO:0006749: glutathione metabolic process	1.21E-03
40	GO:0006662: glycerol ether metabolic process	1.30E-03
41	GO:0030041: actin filament polymerization	1.54E-03
42	GO:0010090: trichome morphogenesis	1.82E-03
43	GO:0006014: D-ribose metabolic process	1.89E-03
44	GO:0006555: methionine metabolic process	1.89E-03
45	GO:0043248: proteasome assembly	1.89E-03
46	GO:0010358: leaf shaping	1.89E-03
47	GO:0006796: phosphate-containing compound metabolic process	1.89E-03
48	GO:0019509: L-methionine salvage from methylthioadenosine	2.27E-03
49	GO:0000028: ribosomal small subunit assembly	3.09E-03
50	GO:0045010: actin nucleation	3.09E-03
51	GO:0010928: regulation of auxin mediated signaling pathway	3.09E-03
52	GO:0035265: organ growth	3.09E-03
53	GO:0006506: GPI anchor biosynthetic process	3.09E-03
54	GO:0034599: cellular response to oxidative stress	3.95E-03
55	GO:0048589: developmental growth	4.00E-03
56	GO:0000902: cell morphogenesis	4.00E-03
57	GO:0046685: response to arsenic-containing substance	4.00E-03
58	GO:0010267: production of ta-siRNAs involved in RNA interference	4.49E-03
59	GO:0000103: sulfate assimilation	4.99E-03
60	GO:0043069: negative regulation of programmed cell death	4.99E-03
61	GO:0009073: aromatic amino acid family biosynthetic process	5.52E-03
62	GO:0006378: mRNA polyadenylation	5.52E-03
63	GO:0010015: root morphogenesis	5.52E-03
64	GO:0006913: nucleocytoplasmic transport	5.52E-03
65	GO:0055114: oxidation-reduction process	5.55E-03
66	GO:0016925: protein sumoylation	6.06E-03
67	GO:0006108: malate metabolic process	6.61E-03
68	GO:2000028: regulation of photoperiodism, flowering	6.61E-03
69	GO:0006807: nitrogen compound metabolic process	6.61E-03
70	GO:0002237: response to molecule of bacterial origin	7.20E-03
71	GO:0010039: response to iron ion	7.79E-03
72	GO:0006886: intracellular protein transport	8.12E-03
73	GO:0006071: glycerol metabolic process	8.41E-03
74	GO:0034976: response to endoplasmic reticulum stress	8.41E-03
75	GO:2000377: regulation of reactive oxygen species metabolic process	9.03E-03
76	GO:0051302: regulation of cell division	9.69E-03
77	GO:0008299: isoprenoid biosynthetic process	9.69E-03
78	GO:0015992: proton transport	1.03E-02
79	GO:0010431: seed maturation	1.03E-02
80	GO:0006397: mRNA processing	1.07E-02
81	GO:0000398: mRNA splicing, via spliceosome	1.08E-02
82	GO:0016226: iron-sulfur cluster assembly	1.10E-02
83	GO:0009294: DNA mediated transformation	1.17E-02
84	GO:0010089: xylem development	1.24E-02
85	GO:0042147: retrograde transport, endosome to Golgi	1.32E-02
86	GO:0000413: protein peptidyl-prolyl isomerization	1.39E-02
87	GO:0006606: protein import into nucleus	1.39E-02
88	GO:0015991: ATP hydrolysis coupled proton transport	1.39E-02
89	GO:0006342: chromatin silencing	1.47E-02
90	GO:0009791: post-embryonic development	1.62E-02
91	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.70E-02
92	GO:0031047: gene silencing by RNA	1.78E-02
93	GO:0008380: RNA splicing	1.93E-02
94	GO:0006914: autophagy	1.95E-02
95	GO:0010286: heat acclimation	2.04E-02
96	GO:0051607: defense response to virus	2.12E-02
97	GO:0000910: cytokinesis	2.12E-02
98	GO:0015031: protein transport	2.12E-02
99	GO:0016126: sterol biosynthetic process	2.21E-02
100	GO:0009826: unidimensional cell growth	2.41E-02
101	GO:0015995: chlorophyll biosynthetic process	2.48E-02
102	GO:0006888: ER to Golgi vesicle-mediated transport	2.48E-02
103	GO:0010311: lateral root formation	2.77E-02
104	GO:0006499: N-terminal protein myristoylation	2.87E-02
105	GO:0009407: toxin catabolic process	2.87E-02
106	GO:0000724: double-strand break repair via homologous recombination	3.06E-02
107	GO:0016192: vesicle-mediated transport	3.27E-02
108	GO:0009926: auxin polar transport	3.79E-02
109	GO:0008283: cell proliferation	3.79E-02
110	GO:0009636: response to toxic substance	4.12E-02
111	GO:0009965: leaf morphogenesis	4.12E-02
112	GO:0006281: DNA repair	4.57E-02
113	GO:0006486: protein glycosylation	4.68E-02
114	GO:0010224: response to UV-B	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0050152: omega-amidase activity	0.00E+00
2	GO:0035064: methylated histone binding	2.01E-06
3	GO:0004576: oligosaccharyl transferase activity	2.30E-05
4	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	3.73E-05
5	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.61E-04
6	GO:0019707: protein-cysteine S-acyltransferase activity	1.73E-04
7	GO:0030611: arsenate reductase activity	1.73E-04
8	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	1.73E-04
9	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	1.73E-04
10	GO:0047617: acyl-CoA hydrolase activity	2.41E-04
11	GO:0004129: cytochrome-c oxidase activity	3.31E-04
12	GO:0008794: arsenate reductase (glutaredoxin) activity	3.31E-04
13	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	3.92E-04
14	GO:0004826: phenylalanine-tRNA ligase activity	3.92E-04
15	GO:0008428: ribonuclease inhibitor activity	3.92E-04
16	GO:0004106: chorismate mutase activity	3.92E-04
17	GO:0032403: protein complex binding	6.40E-04
18	GO:0008430: selenium binding	6.40E-04
19	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.40E-04
20	GO:0000254: C-4 methylsterol oxidase activity	9.13E-04
21	GO:0047134: protein-disulfide reductase activity	1.12E-03
22	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.21E-03
23	GO:0010011: auxin binding	1.21E-03
24	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	1.21E-03
25	GO:0000993: RNA polymerase II core binding	1.21E-03
26	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.21E-03
27	GO:0004791: thioredoxin-disulfide reductase activity	1.40E-03
28	GO:0015035: protein disulfide oxidoreductase activity	1.41E-03
29	GO:0005496: steroid binding	1.54E-03
30	GO:0031386: protein tag	1.54E-03
31	GO:0008948: oxaloacetate decarboxylase activity	1.54E-03
32	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.60E-03
33	GO:0016462: pyrophosphatase activity	1.89E-03
34	GO:0004747: ribokinase activity	2.27E-03
35	GO:0008320: protein transmembrane transporter activity	2.67E-03
36	GO:0042162: telomeric DNA binding	2.67E-03
37	GO:0004427: inorganic diphosphatase activity	2.67E-03
38	GO:0043022: ribosome binding	3.09E-03
39	GO:0003746: translation elongation factor activity	3.78E-03
40	GO:0008889: glycerophosphodiester phosphodiesterase activity	4.00E-03
41	GO:0001055: RNA polymerase II activity	4.49E-03
42	GO:0001054: RNA polymerase I activity	5.52E-03
43	GO:0000976: transcription regulatory region sequence-specific DNA binding	6.06E-03
44	GO:0001056: RNA polymerase III activity	6.06E-03
45	GO:0000049: tRNA binding	6.06E-03
46	GO:0004089: carbonate dehydratase activity	6.61E-03
47	GO:0004725: protein tyrosine phosphatase activity	8.41E-03
48	GO:0051536: iron-sulfur cluster binding	9.03E-03
49	GO:0003714: transcription corepressor activity	9.03E-03
50	GO:0043424: protein histidine kinase binding	9.69E-03
51	GO:0003727: single-stranded RNA binding	1.24E-02
52	GO:0003756: protein disulfide isomerase activity	1.24E-02
53	GO:0004402: histone acetyltransferase activity	1.39E-02
54	GO:0008565: protein transporter activity	1.40E-02
55	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.47E-02
56	GO:0004527: exonuclease activity	1.47E-02
57	GO:0008536: Ran GTPase binding	1.47E-02
58	GO:0008080: N-acetyltransferase activity	1.47E-02
59	GO:0004872: receptor activity	1.62E-02
60	GO:0016788: hydrolase activity, acting on ester bonds	2.56E-02
61	GO:0005515: protein binding	2.81E-02
62	GO:0050897: cobalt ion binding	2.96E-02
63	GO:0003697: single-stranded DNA binding	3.16E-02
64	GO:0042393: histone binding	3.47E-02
65	GO:0051539: 4 iron, 4 sulfur cluster binding	3.47E-02
66	GO:0004364: glutathione transferase activity	3.68E-02
67	GO:0046872: metal ion binding	3.91E-02
68	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.23E-02
69	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
2	GO:0097361: CIA complex	0.00E+00
3	GO:0005747: mitochondrial respiratory chain complex I	4.51E-07
4	GO:0008250: oligosaccharyltransferase complex	3.73E-05
5	GO:0045271: respiratory chain complex I	3.89E-05
6	GO:0032044: DSIF complex	1.73E-04
7	GO:0005732: small nucleolar ribonucleoprotein complex	2.09E-04
8	GO:0005697: telomerase holoenzyme complex	3.92E-04
9	GO:0031966: mitochondrial membrane	8.05E-04
10	GO:0005719: nuclear euchromatin	9.13E-04
11	GO:0033588: Elongator holoenzyme complex	9.13E-04
12	GO:0005849: mRNA cleavage factor complex	9.13E-04
13	GO:1990726: Lsm1-7-Pat1 complex	9.13E-04
14	GO:0000445: THO complex part of transcription export complex	1.21E-03
15	GO:0016471: vacuolar proton-transporting V-type ATPase complex	1.21E-03
16	GO:0005771: multivesicular body	1.89E-03
17	GO:0032588: trans-Golgi network membrane	1.89E-03
18	GO:0030904: retromer complex	1.89E-03
19	GO:0031209: SCAR complex	1.89E-03
20	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.67E-03
21	GO:0000347: THO complex	2.67E-03
22	GO:0005829: cytosol	2.73E-03
23	GO:0005688: U6 snRNP	3.09E-03
24	GO:0000421: autophagosome membrane	3.09E-03
25	GO:0046540: U4/U6 x U5 tri-snRNP complex	3.54E-03
26	GO:0005677: chromatin silencing complex	3.54E-03
27	GO:0005763: mitochondrial small ribosomal subunit	4.00E-03
28	GO:0005736: DNA-directed RNA polymerase I complex	4.00E-03
29	GO:0005666: DNA-directed RNA polymerase III complex	4.49E-03
30	GO:0071011: precatalytic spliceosome	4.49E-03
31	GO:0005740: mitochondrial envelope	4.99E-03
32	GO:0071013: catalytic step 2 spliceosome	5.52E-03
33	GO:0008541: proteasome regulatory particle, lid subcomplex	5.52E-03
34	GO:0005665: DNA-directed RNA polymerase II, core complex	6.06E-03
35	GO:0009508: plastid chromosome	6.61E-03
36	GO:0005783: endoplasmic reticulum	7.25E-03
37	GO:0000419: DNA-directed RNA polymerase V complex	8.41E-03
38	GO:0005789: endoplasmic reticulum membrane	8.51E-03
39	GO:0005758: mitochondrial intermembrane space	9.03E-03
40	GO:0031410: cytoplasmic vesicle	1.10E-02
41	GO:0005774: vacuolar membrane	1.23E-02
42	GO:0005739: mitochondrion	1.33E-02
43	GO:0000785: chromatin	1.78E-02
44	GO:0071944: cell periphery	1.87E-02
45	GO:0032580: Golgi cisterna membrane	1.95E-02
46	GO:0009295: nucleoid	2.04E-02
47	GO:0000932: P-body	2.21E-02
48	GO:0005788: endoplasmic reticulum lumen	2.30E-02
49	GO:0005777: peroxisome	2.51E-02
50	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.75E-02
51	GO:0000325: plant-type vacuole	2.96E-02
52	GO:0016020: membrane	3.01E-02
53	GO:0005730: nucleolus	3.23E-02
54	GO:0031902: late endosome membrane	3.58E-02
55	GO:0005856: cytoskeleton	4.12E-02
56	GO:0000502: proteasome complex	4.68E-02
57	GO:0005635: nuclear envelope	4.91E-02