co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G60530

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0030155: regulation of cell adhesion	0.00E+00
4	GO:0019323: pentose catabolic process	0.00E+00
5	GO:0000025: maltose catabolic process	0.00E+00
6	GO:0033494: ferulate metabolic process	0.00E+00
7	GO:0016553: base conversion or substitution editing	0.00E+00
8	GO:0090279: regulation of calcium ion import	0.00E+00
9	GO:1905177: tracheary element differentiation	0.00E+00
10	GO:0071474: cellular hyperosmotic response	0.00E+00
11	GO:0009735: response to cytokinin	1.53E-09
12	GO:0015979: photosynthesis	2.27E-07
13	GO:0032544: plastid translation	3.13E-06
14	GO:0006412: translation	7.37E-06
15	GO:0009773: photosynthetic electron transport in photosystem I	1.04E-05
16	GO:0005983: starch catabolic process	1.32E-05
17	GO:0042254: ribosome biogenesis	1.56E-05
18	GO:0006109: regulation of carbohydrate metabolic process	2.40E-05
19	GO:0009409: response to cold	2.57E-05
20	GO:0000023: maltose metabolic process	1.77E-04
21	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	1.77E-04
22	GO:0005980: glycogen catabolic process	1.77E-04
23	GO:0043489: RNA stabilization	1.77E-04
24	GO:0044262: cellular carbohydrate metabolic process	1.77E-04
25	GO:0010480: microsporocyte differentiation	1.77E-04
26	GO:0010028: xanthophyll cycle	1.77E-04
27	GO:0009817: defense response to fungus, incompatible interaction	3.37E-04
28	GO:0043085: positive regulation of catalytic activity	3.42E-04
29	GO:0006869: lipid transport	3.69E-04
30	GO:0006521: regulation of cellular amino acid metabolic process	4.01E-04
31	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.01E-04
32	GO:0051262: protein tetramerization	4.01E-04
33	GO:0005976: polysaccharide metabolic process	4.01E-04
34	GO:0031648: protein destabilization	4.01E-04
35	GO:0016122: xanthophyll metabolic process	4.01E-04
36	GO:0034599: cellular response to oxidative stress	4.86E-04
37	GO:0048281: inflorescence morphogenesis	6.55E-04
38	GO:0006000: fructose metabolic process	6.55E-04
39	GO:0010623: programmed cell death involved in cell development	6.55E-04
40	GO:0080055: low-affinity nitrate transport	6.55E-04
41	GO:0090153: regulation of sphingolipid biosynthetic process	6.55E-04
42	GO:0006289: nucleotide-excision repair	6.94E-04
43	GO:0007017: microtubule-based process	7.64E-04
44	GO:0010148: transpiration	9.34E-04
45	GO:0009052: pentose-phosphate shunt, non-oxidative branch	9.34E-04
46	GO:0010306: rhamnogalacturonan II biosynthetic process	9.34E-04
47	GO:0010731: protein glutathionylation	9.34E-04
48	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	9.34E-04
49	GO:0042742: defense response to bacterium	1.15E-03
50	GO:0015976: carbon utilization	1.24E-03
51	GO:0010023: proanthocyanidin biosynthetic process	1.24E-03
52	GO:0051322: anaphase	1.24E-03
53	GO:0019464: glycine decarboxylation via glycine cleavage system	1.24E-03
54	GO:0009765: photosynthesis, light harvesting	1.24E-03
55	GO:0015994: chlorophyll metabolic process	1.24E-03
56	GO:0010600: regulation of auxin biosynthetic process	1.24E-03
57	GO:0010508: positive regulation of autophagy	1.24E-03
58	GO:2000122: negative regulation of stomatal complex development	1.24E-03
59	GO:0006546: glycine catabolic process	1.24E-03
60	GO:0010037: response to carbon dioxide	1.24E-03
61	GO:0006662: glycerol ether metabolic process	1.35E-03
62	GO:0048868: pollen tube development	1.35E-03
63	GO:0000470: maturation of LSU-rRNA	1.94E-03
64	GO:0009955: adaxial/abaxial pattern specification	2.32E-03
65	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.32E-03
66	GO:1901259: chloroplast rRNA processing	2.32E-03
67	GO:0010161: red light signaling pathway	2.74E-03
68	GO:0048437: floral organ development	2.74E-03
69	GO:0070370: cellular heat acclimation	2.74E-03
70	GO:0009645: response to low light intensity stimulus	2.74E-03
71	GO:0010103: stomatal complex morphogenesis	2.74E-03
72	GO:0015995: chlorophyll biosynthetic process	2.80E-03
73	GO:0019827: stem cell population maintenance	3.17E-03
74	GO:0010928: regulation of auxin mediated signaling pathway	3.17E-03
75	GO:0006353: DNA-templated transcription, termination	3.17E-03
76	GO:0030091: protein repair	3.17E-03
77	GO:0009704: de-etiolation	3.17E-03
78	GO:0006002: fructose 6-phosphate metabolic process	3.63E-03
79	GO:0001558: regulation of cell growth	3.63E-03
80	GO:0051865: protein autoubiquitination	4.10E-03
81	GO:0006783: heme biosynthetic process	4.10E-03
82	GO:0006979: response to oxidative stress	4.38E-03
83	GO:0042761: very long-chain fatty acid biosynthetic process	4.60E-03
84	GO:0009658: chloroplast organization	4.93E-03
85	GO:0006782: protoporphyrinogen IX biosynthetic process	5.11E-03
86	GO:0009644: response to high light intensity	5.44E-03
87	GO:0010015: root morphogenesis	5.65E-03
88	GO:0009750: response to fructose	5.65E-03
89	GO:0048229: gametophyte development	5.65E-03
90	GO:0006094: gluconeogenesis	6.78E-03
91	GO:0005986: sucrose biosynthetic process	6.78E-03
92	GO:0010102: lateral root morphogenesis	6.78E-03
93	GO:0006006: glucose metabolic process	6.78E-03
94	GO:0009718: anthocyanin-containing compound biosynthetic process	6.78E-03
95	GO:0010075: regulation of meristem growth	6.78E-03
96	GO:0009934: regulation of meristem structural organization	7.37E-03
97	GO:0010143: cutin biosynthetic process	7.37E-03
98	GO:0009266: response to temperature stimulus	7.37E-03
99	GO:0043086: negative regulation of catalytic activity	8.02E-03
100	GO:0010025: wax biosynthetic process	8.61E-03
101	GO:0005975: carbohydrate metabolic process	8.94E-03
102	GO:0000027: ribosomal large subunit assembly	9.26E-03
103	GO:0009944: polarity specification of adaxial/abaxial axis	9.26E-03
104	GO:0051017: actin filament bundle assembly	9.26E-03
105	GO:0051302: regulation of cell division	9.92E-03
106	GO:0019953: sexual reproduction	9.92E-03
107	GO:0009768: photosynthesis, light harvesting in photosystem I	9.92E-03
108	GO:0061077: chaperone-mediated protein folding	1.06E-02
109	GO:0030245: cellulose catabolic process	1.13E-02
110	GO:0010017: red or far-red light signaling pathway	1.13E-02
111	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.13E-02
112	GO:0009686: gibberellin biosynthetic process	1.20E-02
113	GO:0001944: vasculature development	1.20E-02
114	GO:0010089: xylem development	1.27E-02
115	GO:0006284: base-excision repair	1.27E-02
116	GO:0009790: embryo development	1.42E-02
117	GO:0048653: anther development	1.43E-02
118	GO:0042335: cuticle development	1.43E-02
119	GO:0015986: ATP synthesis coupled proton transport	1.58E-02
120	GO:0045490: pectin catabolic process	1.68E-02
121	GO:0000302: response to reactive oxygen species	1.75E-02
122	GO:0071281: cellular response to iron ion	1.91E-02
123	GO:1901657: glycosyl compound metabolic process	1.91E-02
124	GO:0000910: cytokinesis	2.18E-02
125	GO:0010027: thylakoid membrane organization	2.27E-02
126	GO:0009607: response to biotic stimulus	2.36E-02
127	GO:0009627: systemic acquired resistance	2.45E-02
128	GO:0016311: dephosphorylation	2.64E-02
129	GO:0055114: oxidation-reduction process	2.71E-02
130	GO:0018298: protein-chromophore linkage	2.74E-02
131	GO:0006810: transport	2.76E-02
132	GO:0006970: response to osmotic stress	2.80E-02
133	GO:0000160: phosphorelay signal transduction system	2.84E-02
134	GO:0010218: response to far red light	2.94E-02
135	GO:0009723: response to ethylene	3.00E-02
136	GO:0009631: cold acclimation	3.04E-02
137	GO:0010119: regulation of stomatal movement	3.04E-02
138	GO:0045087: innate immune response	3.24E-02
139	GO:0009637: response to blue light	3.24E-02
140	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.33E-02
141	GO:0006631: fatty acid metabolic process	3.67E-02
142	GO:0045454: cell redox homeostasis	3.85E-02
143	GO:0010114: response to red light	3.88E-02
144	GO:0009965: leaf morphogenesis	4.22E-02
145	GO:0006855: drug transmembrane transport	4.33E-02
146	GO:0009664: plant-type cell wall organization	4.56E-02
147	GO:0016042: lipid catabolic process	4.60E-02
148	GO:0009408: response to heat	4.73E-02
149	GO:0009585: red, far-red light phototransduction	4.80E-02
150	GO:0009736: cytokinin-activated signaling pathway	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
2	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
3	GO:0004567: beta-mannosidase activity	0.00E+00
4	GO:0004134: 4-alpha-glucanotransferase activity	0.00E+00
5	GO:0080082: esculin beta-glucosidase activity	0.00E+00
6	GO:0009899: ent-kaurene synthase activity	0.00E+00
7	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
8	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
9	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
10	GO:0019843: rRNA binding	2.62E-09
11	GO:0003735: structural constituent of ribosome	3.37E-07
12	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.77E-04
13	GO:0005227: calcium activated cation channel activity	1.77E-04
14	GO:0080079: cellobiose glucosidase activity	1.77E-04
15	GO:0008184: glycogen phosphorylase activity	1.77E-04
16	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	1.77E-04
17	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.77E-04
18	GO:0004853: uroporphyrinogen decarboxylase activity	1.77E-04
19	GO:0004645: phosphorylase activity	1.77E-04
20	GO:0008158: hedgehog receptor activity	1.77E-04
21	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	1.77E-04
22	GO:0008047: enzyme activator activity	2.95E-04
23	GO:0004750: ribulose-phosphate 3-epimerase activity	4.01E-04
24	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.01E-04
25	GO:0018708: thiol S-methyltransferase activity	4.01E-04
26	GO:0016868: intramolecular transferase activity, phosphotransferases	4.01E-04
27	GO:0010297: heteropolysaccharide binding	4.01E-04
28	GO:0008266: poly(U) RNA binding	5.04E-04
29	GO:0080054: low-affinity nitrate transmembrane transporter activity	6.55E-04
30	GO:0004324: ferredoxin-NADP+ reductase activity	6.55E-04
31	GO:0050734: hydroxycinnamoyltransferase activity	6.55E-04
32	GO:0045174: glutathione dehydrogenase (ascorbate) activity	6.55E-04
33	GO:0004857: enzyme inhibitor activity	6.94E-04
34	GO:0008289: lipid binding	8.23E-04
35	GO:0004375: glycine dehydrogenase (decarboxylating) activity	9.34E-04
36	GO:0016851: magnesium chelatase activity	9.34E-04
37	GO:0043023: ribosomal large subunit binding	9.34E-04
38	GO:0030570: pectate lyase activity	9.92E-04
39	GO:0047134: protein-disulfide reductase activity	1.16E-03
40	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.24E-03
41	GO:0019104: DNA N-glycosylase activity	1.24E-03
42	GO:0019199: transmembrane receptor protein kinase activity	1.24E-03
43	GO:0042277: peptide binding	1.24E-03
44	GO:0004791: thioredoxin-disulfide reductase activity	1.44E-03
45	GO:0003959: NADPH dehydrogenase activity	1.57E-03
46	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.57E-03
47	GO:0048038: quinone binding	1.65E-03
48	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.88E-03
49	GO:2001070: starch binding	1.94E-03
50	GO:0004130: cytochrome-c peroxidase activity	1.94E-03
51	GO:0005200: structural constituent of cytoskeleton	2.12E-03
52	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.32E-03
53	GO:0005261: cation channel activity	2.32E-03
54	GO:0004602: glutathione peroxidase activity	2.32E-03
55	GO:0015078: hydrogen ion transmembrane transporter activity	3.63E-03
56	GO:0051537: 2 iron, 2 sulfur cluster binding	5.44E-03
57	GO:0044183: protein binding involved in protein folding	5.65E-03
58	GO:0004565: beta-galactosidase activity	6.78E-03
59	GO:0004089: carbonate dehydratase activity	6.78E-03
60	GO:0031409: pigment binding	8.61E-03
61	GO:0005528: FK506 binding	9.26E-03
62	GO:0015035: protein disulfide oxidoreductase activity	9.95E-03
63	GO:0033612: receptor serine/threonine kinase binding	1.06E-02
64	GO:0003924: GTPase activity	1.06E-02
65	GO:0008810: cellulase activity	1.20E-02
66	GO:0016829: lyase activity	1.31E-02
67	GO:0000156: phosphorelay response regulator activity	1.91E-02
68	GO:0051015: actin filament binding	1.91E-02
69	GO:0003684: damaged DNA binding	2.00E-02
70	GO:0016597: amino acid binding	2.18E-02
71	GO:0016491: oxidoreductase activity	2.35E-02
72	GO:0016168: chlorophyll binding	2.36E-02
73	GO:0102483: scopolin beta-glucosidase activity	2.55E-02
74	GO:0008422: beta-glucosidase activity	3.45E-02
75	GO:0052689: carboxylic ester hydrolase activity	3.56E-02
76	GO:0004364: glutathione transferase activity	3.78E-02
77	GO:0005525: GTP binding	4.08E-02
78	GO:0043621: protein self-association	4.11E-02
79	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.33E-02
80	GO:0016298: lipase activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0044391: ribosomal subunit	0.00E+00
2	GO:0009507: chloroplast	1.37E-25
3	GO:0009535: chloroplast thylakoid membrane	4.92E-24
4	GO:0009570: chloroplast stroma	1.65E-20
5	GO:0009579: thylakoid	2.47E-19
6	GO:0009941: chloroplast envelope	9.78E-18
7	GO:0009534: chloroplast thylakoid	1.68E-16
8	GO:0005840: ribosome	1.05E-08
9	GO:0009543: chloroplast thylakoid lumen	1.62E-06
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.41E-06
11	GO:0010287: plastoglobule	2.38E-05
12	GO:0031977: thylakoid lumen	5.08E-05
13	GO:0009538: photosystem I reaction center	1.37E-04
14	GO:0010319: stromule	2.01E-04
15	GO:0030093: chloroplast photosystem I	4.01E-04
16	GO:0030095: chloroplast photosystem II	5.04E-04
17	GO:0010007: magnesium chelatase complex	6.55E-04
18	GO:0005960: glycine cleavage complex	9.34E-04
19	GO:0015630: microtubule cytoskeleton	9.34E-04
20	GO:0048046: apoplast	1.68E-03
21	GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)	1.94E-03
22	GO:0009295: nucleoid	2.12E-03
23	GO:0009501: amyloplast	3.17E-03
24	GO:0045298: tubulin complex	4.10E-03
25	GO:0005763: mitochondrial small ribosomal subunit	4.10E-03
26	GO:0009536: plastid	6.17E-03
27	GO:0005874: microtubule	6.21E-03
28	GO:0009508: plastid chromosome	6.78E-03
29	GO:0009574: preprophase band	6.78E-03
30	GO:0030076: light-harvesting complex	7.98E-03
31	GO:0009654: photosystem II oxygen evolving complex	9.92E-03
32	GO:0042651: thylakoid membrane	9.92E-03
33	GO:0015935: small ribosomal subunit	1.06E-02
34	GO:0015629: actin cytoskeleton	1.20E-02
35	GO:0009522: photosystem I	1.58E-02
36	GO:0009523: photosystem II	1.66E-02
37	GO:0019898: extrinsic component of membrane	1.66E-02
38	GO:0016020: membrane	1.76E-02
39	GO:0009505: plant-type cell wall	2.19E-02
40	GO:0030529: intracellular ribonucleoprotein complex	2.27E-02
41	GO:0015934: large ribosomal subunit	3.04E-02
42	GO:0022625: cytosolic large ribosomal subunit	3.38E-02
43	GO:0005856: cytoskeleton	4.22E-02
44	GO:0005618: cell wall	4.52E-02