GO Enrichment Analysis of Co-expressed Genes with
AT3G60360
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 2 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 3 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 4 | GO:0070476: rRNA (guanine-N7)-methylation | 0.00E+00 |
| 5 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 6 | GO:0006412: translation | 5.45E-14 |
| 7 | GO:0006364: rRNA processing | 7.96E-13 |
| 8 | GO:0042254: ribosome biogenesis | 2.42E-10 |
| 9 | GO:0010162: seed dormancy process | 7.54E-07 |
| 10 | GO:0042273: ribosomal large subunit biogenesis | 4.38E-06 |
| 11 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.63E-05 |
| 12 | GO:0000028: ribosomal small subunit assembly | 2.95E-05 |
| 13 | GO:0000494: box C/D snoRNA 3'-end processing | 6.58E-05 |
| 14 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 6.58E-05 |
| 15 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 6.58E-05 |
| 16 | GO:0043985: histone H4-R3 methylation | 6.58E-05 |
| 17 | GO:1990258: histone glutamine methylation | 6.58E-05 |
| 18 | GO:0006407: rRNA export from nucleus | 6.58E-05 |
| 19 | GO:0031120: snRNA pseudouridine synthesis | 6.58E-05 |
| 20 | GO:0031118: rRNA pseudouridine synthesis | 6.58E-05 |
| 21 | GO:0034470: ncRNA processing | 1.59E-04 |
| 22 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.59E-04 |
| 23 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.81E-04 |
| 24 | GO:0016569: covalent chromatin modification | 2.38E-04 |
| 25 | GO:0009553: embryo sac development | 2.48E-04 |
| 26 | GO:0009294: DNA mediated transformation | 2.68E-04 |
| 27 | GO:0009855: determination of bilateral symmetry | 3.90E-04 |
| 28 | GO:0006479: protein methylation | 5.20E-04 |
| 29 | GO:0000460: maturation of 5.8S rRNA | 5.20E-04 |
| 30 | GO:0000380: alternative mRNA splicing, via spliceosome | 6.60E-04 |
| 31 | GO:0031167: rRNA methylation | 6.60E-04 |
| 32 | GO:0000470: maturation of LSU-rRNA | 8.06E-04 |
| 33 | GO:0080186: developmental vegetative growth | 1.12E-03 |
| 34 | GO:0001510: RNA methylation | 1.47E-03 |
| 35 | GO:0000387: spliceosomal snRNP assembly | 1.85E-03 |
| 36 | GO:0030422: production of siRNA involved in RNA interference | 2.05E-03 |
| 37 | GO:0010030: positive regulation of seed germination | 3.16E-03 |
| 38 | GO:0000027: ribosomal large subunit assembly | 3.65E-03 |
| 39 | GO:0007005: mitochondrion organization | 4.43E-03 |
| 40 | GO:0009561: megagametogenesis | 4.98E-03 |
| 41 | GO:0070417: cellular response to cold | 5.26E-03 |
| 42 | GO:0008033: tRNA processing | 5.55E-03 |
| 43 | GO:0010501: RNA secondary structure unwinding | 5.55E-03 |
| 44 | GO:0009960: endosperm development | 5.85E-03 |
| 45 | GO:0010197: polar nucleus fusion | 5.85E-03 |
| 46 | GO:0032502: developmental process | 7.08E-03 |
| 47 | GO:0045892: negative regulation of transcription, DNA-templated | 1.01E-02 |
| 48 | GO:0016049: cell growth | 1.02E-02 |
| 49 | GO:0048527: lateral root development | 1.17E-02 |
| 50 | GO:0006099: tricarboxylic acid cycle | 1.28E-02 |
| 51 | GO:0000154: rRNA modification | 1.62E-02 |
| 52 | GO:0010224: response to UV-B | 1.88E-02 |
| 53 | GO:0006396: RNA processing | 2.41E-02 |
| 54 | GO:0009790: embryo development | 3.09E-02 |
| 55 | GO:0006413: translational initiation | 3.32E-02 |
| 56 | GO:0007166: cell surface receptor signaling pathway | 3.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003963: RNA-3'-phosphate cyclase activity | 0.00E+00 |
| 2 | GO:0016435: rRNA (guanine) methyltransferase activity | 0.00E+00 |
| 3 | GO:0003735: structural constituent of ribosome | 2.46E-17 |
| 4 | GO:0030515: snoRNA binding | 3.67E-10 |
| 5 | GO:0004407: histone deacetylase activity | 3.56E-08 |
| 6 | GO:0003723: RNA binding | 2.59E-07 |
| 7 | GO:0000166: nucleotide binding | 8.83E-06 |
| 8 | GO:0042134: rRNA primary transcript binding | 6.58E-05 |
| 9 | GO:0048037: cofactor binding | 6.58E-05 |
| 10 | GO:1990259: histone-glutamine methyltransferase activity | 6.58E-05 |
| 11 | GO:0001054: RNA polymerase I activity | 8.19E-05 |
| 12 | GO:0001056: RNA polymerase III activity | 9.59E-05 |
| 13 | GO:0043021: ribonucleoprotein complex binding | 1.59E-04 |
| 14 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 1.59E-04 |
| 15 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 1.59E-04 |
| 16 | GO:0070181: small ribosomal subunit rRNA binding | 2.69E-04 |
| 17 | GO:0008649: rRNA methyltransferase activity | 2.69E-04 |
| 18 | GO:0003676: nucleic acid binding | 1.25E-03 |
| 19 | GO:0008135: translation factor activity, RNA binding | 1.47E-03 |
| 20 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.79E-03 |
| 21 | GO:0001055: RNA polymerase II activity | 1.85E-03 |
| 22 | GO:0008026: ATP-dependent helicase activity | 2.68E-03 |
| 23 | GO:0009982: pseudouridine synthase activity | 2.70E-03 |
| 24 | GO:0019843: rRNA binding | 3.15E-03 |
| 25 | GO:0004527: exonuclease activity | 5.85E-03 |
| 26 | GO:0016787: hydrolase activity | 6.31E-03 |
| 27 | GO:0004004: ATP-dependent RNA helicase activity | 9.79E-03 |
| 28 | GO:0003924: GTPase activity | 1.23E-02 |
| 29 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.28E-02 |
| 30 | GO:0003743: translation initiation factor activity | 3.89E-02 |
| 31 | GO:0008168: methyltransferase activity | 4.63E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0005730: nucleolus | 5.35E-36 |
| 3 | GO:0005840: ribosome | 1.36E-13 |
| 4 | GO:0032040: small-subunit processome | 4.12E-11 |
| 5 | GO:0022625: cytosolic large ribosomal subunit | 6.69E-10 |
| 6 | GO:0022627: cytosolic small ribosomal subunit | 4.69E-09 |
| 7 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 3.46E-07 |
| 8 | GO:0022626: cytosolic ribosome | 4.66E-07 |
| 9 | GO:0031428: box C/D snoRNP complex | 1.13E-05 |
| 10 | GO:0005834: heterotrimeric G-protein complex | 1.18E-05 |
| 11 | GO:0030687: preribosome, large subunit precursor | 2.24E-05 |
| 12 | GO:0005634: nucleus | 2.50E-05 |
| 13 | GO:0005736: DNA-directed RNA polymerase I complex | 4.72E-05 |
| 14 | GO:0015030: Cajal body | 5.76E-05 |
| 15 | GO:0005666: DNA-directed RNA polymerase III complex | 5.76E-05 |
| 16 | GO:0034388: Pwp2p-containing subcomplex of 90S preribosome | 6.58E-05 |
| 17 | GO:0030686: 90S preribosome | 6.58E-05 |
| 18 | GO:0070545: PeBoW complex | 1.59E-04 |
| 19 | GO:0015935: small ribosomal subunit | 2.23E-04 |
| 20 | GO:0030130: clathrin coat of trans-Golgi network vesicle | 2.69E-04 |
| 21 | GO:0030132: clathrin coat of coated pit | 2.69E-04 |
| 22 | GO:0031429: box H/ACA snoRNP complex | 3.90E-04 |
| 23 | GO:0009506: plasmodesma | 4.16E-04 |
| 24 | GO:0016363: nuclear matrix | 9.59E-04 |
| 25 | GO:0034399: nuclear periphery | 1.29E-03 |
| 26 | GO:0005829: cytosol | 1.29E-03 |
| 27 | GO:0005763: mitochondrial small ribosomal subunit | 1.65E-03 |
| 28 | GO:0000418: DNA-directed RNA polymerase IV complex | 2.05E-03 |
| 29 | GO:0005665: DNA-directed RNA polymerase II, core complex | 2.48E-03 |
| 30 | GO:0019013: viral nucleocapsid | 2.70E-03 |
| 31 | GO:0005654: nucleoplasm | 3.07E-03 |
| 32 | GO:0005737: cytoplasm | 3.11E-03 |
| 33 | GO:0000419: DNA-directed RNA polymerase V complex | 3.40E-03 |
| 34 | GO:0005618: cell wall | 4.40E-03 |
| 35 | GO:0016592: mediator complex | 7.08E-03 |
| 36 | GO:0030529: intracellular ribonucleoprotein complex | 8.74E-03 |
| 37 | GO:0019005: SCF ubiquitin ligase complex | 1.05E-02 |
| 38 | GO:0015934: large ribosomal subunit | 1.17E-02 |
| 39 | GO:0005747: mitochondrial respiratory chain complex I | 2.12E-02 |
| 40 | GO:0005773: vacuole | 2.47E-02 |
| 41 | GO:0005732: small nucleolar ribonucleoprotein complex | 2.51E-02 |
| 42 | GO:0005759: mitochondrial matrix | 3.26E-02 |
| 43 | GO:0005622: intracellular | 3.87E-02 |