Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G60245

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080184: response to phenylpropanoid0.00E+00
2GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
3GO:0019750: chloroplast localization0.00E+00
4GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
5GO:0001881: receptor recycling0.00E+00
6GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
7GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
8GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
9GO:0006412: translation2.29E-129
10GO:0042254: ribosome biogenesis3.20E-47
11GO:0000027: ribosomal large subunit assembly2.24E-11
12GO:0006511: ubiquitin-dependent protein catabolic process2.77E-09
13GO:0000028: ribosomal small subunit assembly1.58E-08
14GO:0006626: protein targeting to mitochondrion5.54E-07
15GO:0009955: adaxial/abaxial pattern specification2.50E-05
16GO:1902626: assembly of large subunit precursor of preribosome6.29E-05
17GO:0002181: cytoplasmic translation6.29E-05
18GO:0009735: response to cytokinin1.17E-04
19GO:0043248: proteasome assembly4.67E-04
20GO:0045040: protein import into mitochondrial outer membrane4.67E-04
21GO:0006414: translational elongation5.40E-04
22GO:0009651: response to salt stress6.58E-04
23GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.69E-04
24GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)6.69E-04
25GO:1901349: glucosinolate transport6.69E-04
26GO:0006407: rRNA export from nucleus6.69E-04
27GO:0090449: phloem glucosinolate loading6.69E-04
28GO:0015801: aromatic amino acid transport6.69E-04
29GO:0030490: maturation of SSU-rRNA6.69E-04
30GO:2001006: regulation of cellulose biosynthetic process6.69E-04
31GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process7.25E-04
32GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c7.92E-04
33GO:0000413: protein peptidyl-prolyl isomerization1.23E-03
34GO:0009245: lipid A biosynthetic process1.43E-03
35GO:0048569: post-embryonic animal organ development1.44E-03
36GO:0006452: translational frameshifting1.44E-03
37GO:0051788: response to misfolded protein1.44E-03
38GO:0015786: UDP-glucose transport1.44E-03
39GO:0045905: positive regulation of translational termination1.44E-03
40GO:0071668: plant-type cell wall assembly1.44E-03
41GO:0045901: positive regulation of translational elongation1.44E-03
42GO:0006123: mitochondrial electron transport, cytochrome c to oxygen1.44E-03
43GO:0000387: spliceosomal snRNP assembly1.70E-03
44GO:0009965: leaf morphogenesis1.76E-03
45GO:0046168: glycerol-3-phosphate catabolic process2.38E-03
46GO:0008333: endosome to lysosome transport2.38E-03
47GO:0045793: positive regulation of cell size2.38E-03
48GO:0015783: GDP-fucose transport2.38E-03
49GO:0034227: tRNA thio-modification2.38E-03
50GO:0042256: mature ribosome assembly2.38E-03
51GO:0090506: axillary shoot meristem initiation2.38E-03
52GO:0051603: proteolysis involved in cellular protein catabolic process2.46E-03
53GO:0006820: anion transport2.63E-03
54GO:0006446: regulation of translational initiation3.39E-03
55GO:0070301: cellular response to hydrogen peroxide3.46E-03
56GO:0006241: CTP biosynthetic process3.46E-03
57GO:0072334: UDP-galactose transmembrane transport3.46E-03
58GO:0010971: positive regulation of G2/M transition of mitotic cell cycle3.46E-03
59GO:0006072: glycerol-3-phosphate metabolic process3.46E-03
60GO:0009647: skotomorphogenesis3.46E-03
61GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.46E-03
62GO:0006165: nucleoside diphosphate phosphorylation3.46E-03
63GO:0006228: UTP biosynthetic process3.46E-03
64GO:0006168: adenine salvage3.46E-03
65GO:0001676: long-chain fatty acid metabolic process3.46E-03
66GO:0046513: ceramide biosynthetic process3.46E-03
67GO:0032877: positive regulation of DNA endoreduplication3.46E-03
68GO:0046836: glycolipid transport3.46E-03
69GO:0006166: purine ribonucleoside salvage3.46E-03
70GO:0046686: response to cadmium ion4.33E-03
71GO:0042274: ribosomal small subunit biogenesis4.67E-03
72GO:0010387: COP9 signalosome assembly4.67E-03
73GO:0006183: GTP biosynthetic process4.67E-03
74GO:0010363: regulation of plant-type hypersensitive response4.67E-03
75GO:2000032: regulation of secondary shoot formation4.67E-03
76GO:0051781: positive regulation of cell division4.67E-03
77GO:0030150: protein import into mitochondrial matrix4.71E-03
78GO:0006487: protein N-linked glycosylation4.71E-03
79GO:0010043: response to zinc ion4.84E-03
80GO:0000398: mRNA splicing, via spliceosome5.00E-03
81GO:0009793: embryo development ending in seed dormancy5.51E-03
82GO:0061077: chaperone-mediated protein folding5.73E-03
83GO:0015992: proton transport5.73E-03
84GO:0010117: photoprotection6.01E-03
85GO:0097428: protein maturation by iron-sulfur cluster transfer6.01E-03
86GO:0007029: endoplasmic reticulum organization6.01E-03
87GO:1902183: regulation of shoot apical meristem development6.01E-03
88GO:0044209: AMP salvage6.01E-03
89GO:0000470: maturation of LSU-rRNA7.46E-03
90GO:0001731: formation of translation preinitiation complex7.46E-03
91GO:0008283: cell proliferation7.54E-03
92GO:0006413: translational initiation8.33E-03
93GO:0015991: ATP hydrolysis coupled proton transport8.77E-03
94GO:1901001: negative regulation of response to salt stress9.02E-03
95GO:0000911: cytokinesis by cell plate formation9.02E-03
96GO:0006120: mitochondrial electron transport, NADH to ubiquinone9.02E-03
97GO:0098655: cation transmembrane transport9.02E-03
98GO:0000245: spliceosomal complex assembly9.02E-03
99GO:0009554: megasporogenesis9.02E-03
100GO:1900056: negative regulation of leaf senescence1.07E-02
101GO:0000338: protein deneddylation1.07E-02
102GO:0032880: regulation of protein localization1.07E-02
103GO:0048528: post-embryonic root development1.07E-02
104GO:0009690: cytokinin metabolic process1.25E-02
105GO:0006506: GPI anchor biosynthetic process1.25E-02
106GO:0031540: regulation of anthocyanin biosynthetic process1.25E-02
107GO:0030163: protein catabolic process1.34E-02
108GO:0022900: electron transport chain1.43E-02
109GO:0010100: negative regulation of photomorphogenesis1.43E-02
110GO:0010204: defense response signaling pathway, resistance gene-independent1.43E-02
111GO:0009808: lignin metabolic process1.43E-02
112GO:0010093: specification of floral organ identity1.43E-02
113GO:0046685: response to arsenic-containing substance1.63E-02
114GO:0010206: photosystem II repair1.63E-02
115GO:0048589: developmental growth1.63E-02
116GO:0015780: nucleotide-sugar transport1.63E-02
117GO:0098656: anion transmembrane transport1.63E-02
118GO:0042761: very long-chain fatty acid biosynthetic process1.84E-02
119GO:0009870: defense response signaling pathway, resistance gene-dependent2.05E-02
120GO:0000103: sulfate assimilation2.05E-02
121GO:0043069: negative regulation of programmed cell death2.05E-02
122GO:0045036: protein targeting to chloroplast2.05E-02
123GO:0006913: nucleocytoplasmic transport2.27E-02
124GO:0015770: sucrose transport2.27E-02
125GO:0010015: root morphogenesis2.27E-02
126GO:0006499: N-terminal protein myristoylation2.46E-02
127GO:0008361: regulation of cell size2.51E-02
128GO:0016925: protein sumoylation2.51E-02
129GO:0010102: lateral root morphogenesis2.75E-02
130GO:0009853: photorespiration2.83E-02
131GO:0034599: cellular response to oxidative stress2.96E-02
132GO:0048467: gynoecium development2.99E-02
133GO:0007034: vacuolar transport2.99E-02
134GO:0034976: response to endoplasmic reticulum stress3.51E-02
135GO:0015031: protein transport3.61E-02
136GO:0009116: nucleoside metabolic process3.78E-02
137GO:0006406: mRNA export from nucleus3.78E-02
138GO:0006289: nucleotide-excision repair3.78E-02
139GO:0000209: protein polyubiquitination3.79E-02
140GO:0009644: response to high light intensity3.94E-02
141GO:0008643: carbohydrate transport3.94E-02
142GO:0009409: response to cold4.08E-02
143GO:0003333: amino acid transmembrane transport4.33E-02
144GO:0051260: protein homooligomerization4.33E-02
145GO:0048511: rhythmic process4.33E-02
146GO:0010431: seed maturation4.33E-02
147GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process4.41E-02
148GO:0016226: iron-sulfur cluster assembly4.62E-02
149GO:0007005: mitochondrion organization4.62E-02
150GO:0040007: growth4.91E-02
RankGO TermAdjusted P value
1GO:0052873: FMN reductase (NADPH) activity0.00E+00
2GO:0008752: FMN reductase activity0.00E+00
3GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
4GO:0003735: structural constituent of ribosome1.11E-164
5GO:0003729: mRNA binding9.07E-34
6GO:0004298: threonine-type endopeptidase activity1.71E-18
7GO:0019843: rRNA binding2.00E-14
8GO:0008233: peptidase activity3.11E-10
9GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity8.58E-06
10GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.19E-05
11GO:0008097: 5S rRNA binding1.31E-04
12GO:0004576: oligosaccharyl transferase activity2.23E-04
13GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity3.35E-04
14GO:0031177: phosphopantetheine binding4.67E-04
15GO:0000035: acyl binding6.20E-04
16GO:0000824: inositol tetrakisphosphate 3-kinase activity6.69E-04
17GO:0047326: inositol tetrakisphosphate 5-kinase activity6.69E-04
18GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity6.69E-04
19GO:0090448: glucosinolate:proton symporter activity6.69E-04
20GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity6.69E-04
21GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process9.83E-04
22GO:0043022: ribosome binding9.83E-04
23GO:0015288: porin activity9.83E-04
24GO:0003746: translation elongation factor activity9.99E-04
25GO:0008308: voltage-gated anion channel activity1.20E-03
26GO:0015173: aromatic amino acid transmembrane transporter activity1.44E-03
27GO:0004750: ribulose-phosphate 3-epimerase activity1.44E-03
28GO:0008517: folic acid transporter activity1.44E-03
29GO:0004634: phosphopyruvate hydratase activity1.44E-03
30GO:0050291: sphingosine N-acyltransferase activity1.44E-03
31GO:0001055: RNA polymerase II activity1.70E-03
32GO:0001054: RNA polymerase I activity2.30E-03
33GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.38E-03
34GO:0070181: small ribosomal subunit rRNA binding2.38E-03
35GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity2.38E-03
36GO:0005457: GDP-fucose transmembrane transporter activity2.38E-03
37GO:0070180: large ribosomal subunit rRNA binding2.38E-03
38GO:0001056: RNA polymerase III activity2.63E-03
39GO:0015266: protein channel activity3.00E-03
40GO:0003999: adenine phosphoribosyltransferase activity3.46E-03
41GO:0022890: inorganic cation transmembrane transporter activity3.46E-03
42GO:0005460: UDP-glucose transmembrane transporter activity3.46E-03
43GO:0004550: nucleoside diphosphate kinase activity3.46E-03
44GO:0017089: glycolipid transporter activity3.46E-03
45GO:0070628: proteasome binding4.67E-03
46GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances4.67E-03
47GO:0016004: phospholipase activator activity4.67E-03
48GO:0010011: auxin binding4.67E-03
49GO:0051861: glycolipid binding4.67E-03
50GO:0005528: FK506 binding4.71E-03
51GO:0005459: UDP-galactose transmembrane transporter activity6.01E-03
52GO:0005275: amine transmembrane transporter activity6.01E-03
53GO:0031386: protein tag6.01E-03
54GO:0031593: polyubiquitin binding7.46E-03
55GO:0004130: cytochrome-c peroxidase activity7.46E-03
56GO:0016688: L-ascorbate peroxidase activity7.46E-03
57GO:0008514: organic anion transmembrane transporter activity7.47E-03
58GO:0102391: decanoate--CoA ligase activity9.02E-03
59GO:0005347: ATP transmembrane transporter activity9.02E-03
60GO:0005338: nucleotide-sugar transmembrane transporter activity1.07E-02
61GO:0042162: telomeric DNA binding1.07E-02
62GO:0008121: ubiquinol-cytochrome-c reductase activity1.07E-02
63GO:0004467: long-chain fatty acid-CoA ligase activity1.07E-02
64GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.11E-02
65GO:0008137: NADH dehydrogenase (ubiquinone) activity1.17E-02
66GO:0003743: translation initiation factor activity1.17E-02
67GO:0015078: hydrogen ion transmembrane transporter activity1.43E-02
68GO:0000989: transcription factor activity, transcription factor binding1.63E-02
69GO:0008515: sucrose transmembrane transporter activity2.27E-02
70GO:0004129: cytochrome-c oxidase activity2.27E-02
71GO:0046961: proton-transporting ATPase activity, rotational mechanism2.27E-02
72GO:0008794: arsenate reductase (glutaredoxin) activity2.27E-02
73GO:0008559: xenobiotic-transporting ATPase activity2.27E-02
74GO:0044183: protein binding involved in protein folding2.27E-02
75GO:0003723: RNA binding2.41E-02
76GO:0050897: cobalt ion binding2.58E-02
77GO:0003697: single-stranded DNA binding2.83E-02
78GO:0004175: endopeptidase activity2.99E-02
79GO:0051119: sugar transmembrane transporter activity3.25E-02
80GO:0043130: ubiquitin binding3.78E-02
81GO:0036459: thiol-dependent ubiquitinyl hydrolase activity4.33E-02
82GO:0004540: ribonuclease activity4.33E-02
RankGO TermAdjusted P value
1GO:0097361: CIA complex0.00E+00
2GO:0043186: P granule0.00E+00
3GO:0022626: cytosolic ribosome5.74E-124
4GO:0005840: ribosome3.69E-115
5GO:0022625: cytosolic large ribosomal subunit2.61E-99
6GO:0022627: cytosolic small ribosomal subunit1.84E-73
7GO:0005829: cytosol4.63E-42
8GO:0005737: cytoplasm8.35E-37
9GO:0005730: nucleolus5.17E-28
10GO:0009506: plasmodesma1.02E-22
11GO:0005774: vacuolar membrane1.32E-19
12GO:0005839: proteasome core complex1.71E-18
13GO:0000502: proteasome complex6.51E-18
14GO:0015934: large ribosomal subunit1.99E-15
15GO:0005773: vacuole1.69E-13
16GO:0019773: proteasome core complex, alpha-subunit complex2.24E-12
17GO:0016020: membrane6.19E-12
18GO:0015935: small ribosomal subunit1.13E-07
19GO:0005886: plasma membrane1.52E-06
20GO:0005618: cell wall2.04E-06
21GO:0005732: small nucleolar ribonucleoprotein complex3.23E-05
22GO:0005758: mitochondrial intermembrane space4.71E-05
23GO:0009507: chloroplast6.16E-05
24GO:0005741: mitochondrial outer membrane6.91E-05
25GO:0005742: mitochondrial outer membrane translocase complex7.81E-05
26GO:0071011: precatalytic spliceosome1.35E-04
27GO:0071013: catalytic step 2 spliceosome2.12E-04
28GO:0005665: DNA-directed RNA polymerase II, core complex2.57E-04
29GO:0019013: viral nucleocapsid3.08E-04
30GO:0008250: oligosaccharyltransferase complex3.35E-04
31GO:0005771: multivesicular body4.67E-04
32GO:0000419: DNA-directed RNA polymerase V complex4.91E-04
33GO:0005783: endoplasmic reticulum5.06E-04
34GO:0070469: respiratory chain6.40E-04
35GO:0019774: proteasome core complex, beta-subunit complex6.69E-04
36GO:0072546: ER membrane protein complex6.69E-04
37GO:0030686: 90S preribosome6.69E-04
38GO:0046930: pore complex1.20E-03
39GO:0005736: DNA-directed RNA polymerase I complex1.43E-03
40GO:0000015: phosphopyruvate hydratase complex1.44E-03
41GO:0005697: telomerase holoenzyme complex1.44E-03
42GO:0005666: DNA-directed RNA polymerase III complex1.70E-03
43GO:0000418: DNA-directed RNA polymerase IV complex1.98E-03
44GO:0008541: proteasome regulatory particle, lid subcomplex2.30E-03
45GO:0046861: glyoxysomal membrane2.38E-03
46GO:0034719: SMN-Sm protein complex2.38E-03
47GO:0005853: eukaryotic translation elongation factor 1 complex2.38E-03
48GO:0005788: endoplasmic reticulum lumen3.06E-03
49GO:0005747: mitochondrial respiratory chain complex I3.17E-03
50GO:0005750: mitochondrial respiratory chain complex III3.39E-03
51GO:0009331: glycerol-3-phosphate dehydrogenase complex3.46E-03
52GO:0033180: proton-transporting V-type ATPase, V1 domain3.46E-03
53GO:1990726: Lsm1-7-Pat1 complex3.46E-03
54GO:0005682: U5 snRNP4.67E-03
55GO:0009526: plastid envelope4.67E-03
56GO:0033179: proton-transporting V-type ATPase, V0 domain4.67E-03
57GO:0016471: vacuolar proton-transporting V-type ATPase complex4.67E-03
58GO:0045271: respiratory chain complex I5.21E-03
59GO:0097526: spliceosomal tri-snRNP complex6.01E-03
60GO:0005746: mitochondrial respiratory chain6.01E-03
61GO:0005687: U4 snRNP6.01E-03
62GO:0030904: retromer complex7.46E-03
63GO:0016282: eukaryotic 43S preinitiation complex7.46E-03
64GO:0000974: Prp19 complex7.46E-03
65GO:0033290: eukaryotic 48S preinitiation complex9.02E-03
66GO:0005689: U12-type spliceosomal complex9.02E-03
67GO:0016272: prefoldin complex9.02E-03
68GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.25E-02
69GO:0005688: U6 snRNP1.25E-02
70GO:0000421: autophagosome membrane1.25E-02
71GO:0071004: U2-type prespliceosome1.25E-02
72GO:0045273: respiratory chain complex II1.25E-02
73GO:0005743: mitochondrial inner membrane1.29E-02
74GO:0005681: spliceosomal complex1.37E-02
75GO:0009514: glyoxysome1.43E-02
76GO:0046540: U4/U6 x U5 tri-snRNP complex1.43E-02
77GO:0008180: COP9 signalosome1.63E-02
78GO:0005685: U1 snRNP1.63E-02
79GO:0031901: early endosome membrane1.63E-02
80GO:0005622: intracellular1.69E-02
81GO:0005740: mitochondrial envelope2.05E-02
82GO:0005686: U2 snRNP2.05E-02
83GO:0009707: chloroplast outer membrane2.23E-02
84GO:0005852: eukaryotic translation initiation factor 3 complex2.27E-02
85GO:0031307: integral component of mitochondrial outer membrane2.51E-02
86GO:0009508: plastid chromosome2.75E-02
87GO:0005795: Golgi stack3.25E-02
88GO:0005769: early endosome3.51E-02
89GO:0005794: Golgi apparatus3.80E-02
90GO:0042651: thylakoid membrane4.05E-02
91GO:0031966: mitochondrial membrane4.57E-02
92GO:0031410: cytoplasmic vesicle4.62E-02
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Gene type



Gene DE type