Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G60130

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042430: indole-containing compound metabolic process0.00E+00
2GO:0046177: D-gluconate catabolic process0.00E+00
3GO:0009398: FMN biosynthetic process0.00E+00
4GO:1903647: negative regulation of chlorophyll catabolic process0.00E+00
5GO:0042362: fat-soluble vitamin biosynthetic process0.00E+00
6GO:0006073: cellular glucan metabolic process0.00E+00
7GO:0010299: detoxification of cobalt ion0.00E+00
8GO:0035725: sodium ion transmembrane transport0.00E+00
9GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase0.00E+00
10GO:0010312: detoxification of zinc ion0.00E+00
11GO:0009722: detection of cytokinin stimulus0.00E+00
12GO:0006593: ornithine catabolic process0.00E+00
13GO:0071345: cellular response to cytokine stimulus0.00E+00
14GO:0055114: oxidation-reduction process1.03E-05
15GO:0010189: vitamin E biosynthetic process6.84E-05
16GO:0015996: chlorophyll catabolic process1.47E-04
17GO:1903409: reactive oxygen species biosynthetic process1.60E-04
18GO:0009852: auxin catabolic process1.60E-04
19GO:0006560: proline metabolic process1.60E-04
20GO:0015812: gamma-aminobutyric acid transport1.60E-04
21GO:0019544: arginine catabolic process to glutamate1.60E-04
22GO:0006148: inosine catabolic process1.60E-04
23GO:0009651: response to salt stress2.97E-04
24GO:0009684: indoleacetic acid biosynthetic process2.97E-04
25GO:0010133: proline catabolic process to glutamate3.65E-04
26GO:2000379: positive regulation of reactive oxygen species metabolic process3.65E-04
27GO:0009915: phloem sucrose loading3.65E-04
28GO:0032527: protein exit from endoplasmic reticulum3.65E-04
29GO:0006807: nitrogen compound metabolic process3.89E-04
30GO:0006099: tricarboxylic acid cycle4.04E-04
31GO:0009833: plant-type primary cell wall biogenesis5.47E-04
32GO:0051646: mitochondrion localization5.97E-04
33GO:0045493: xylan catabolic process5.97E-04
34GO:0010351: lithium ion transport5.97E-04
35GO:0006081: cellular aldehyde metabolic process5.97E-04
36GO:0044746: amino acid transmembrane export5.97E-04
37GO:0015692: lead ion transport5.97E-04
38GO:0009636: response to toxic substance6.13E-04
39GO:0006572: tyrosine catabolic process8.53E-04
40GO:0042391: regulation of membrane potential1.09E-03
41GO:0000271: polysaccharide biosynthetic process1.09E-03
42GO:0061088: regulation of sequestering of zinc ion1.13E-03
43GO:0006542: glutamine biosynthetic process1.13E-03
44GO:0051781: positive regulation of cell division1.13E-03
45GO:0098719: sodium ion import across plasma membrane1.43E-03
46GO:0007029: endoplasmic reticulum organization1.43E-03
47GO:0009697: salicylic acid biosynthetic process1.43E-03
48GO:0006635: fatty acid beta-oxidation1.44E-03
49GO:1901657: glycosyl compound metabolic process1.63E-03
50GO:0006828: manganese ion transport1.76E-03
51GO:0002238: response to molecule of fungal origin1.76E-03
52GO:0006561: proline biosynthetic process1.76E-03
53GO:0015691: cadmium ion transport1.76E-03
54GO:0042732: D-xylose metabolic process1.76E-03
55GO:0071805: potassium ion transmembrane transport1.84E-03
56GO:0005975: carbohydrate metabolic process1.97E-03
57GO:0046686: response to cadmium ion2.08E-03
58GO:0010019: chloroplast-nucleus signaling pathway2.11E-03
59GO:0009816: defense response to bacterium, incompatible interaction2.18E-03
60GO:0042128: nitrate assimilation2.30E-03
61GO:0010150: leaf senescence2.37E-03
62GO:0010411: xyloglucan metabolic process2.43E-03
63GO:0030244: cellulose biosynthetic process2.69E-03
64GO:0010439: regulation of glucosinolate biosynthetic process2.88E-03
65GO:0006875: cellular metal ion homeostasis2.88E-03
66GO:0055075: potassium ion homeostasis2.88E-03
67GO:0009231: riboflavin biosynthetic process2.88E-03
68GO:0016559: peroxisome fission2.88E-03
69GO:0010043: response to zinc ion3.10E-03
70GO:0006972: hyperosmotic response3.29E-03
71GO:0071555: cell wall organization3.36E-03
72GO:0080144: amino acid homeostasis3.72E-03
73GO:0034765: regulation of ion transmembrane transport3.72E-03
74GO:0090333: regulation of stomatal closure3.72E-03
75GO:0046916: cellular transition metal ion homeostasis3.72E-03
76GO:0006098: pentose-phosphate shunt3.72E-03
77GO:0030001: metal ion transport3.86E-03
78GO:0006631: fatty acid metabolic process4.03E-03
79GO:0048354: mucilage biosynthetic process involved in seed coat development4.17E-03
80GO:0051453: regulation of intracellular pH4.17E-03
81GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process4.17E-03
82GO:0009926: auxin polar transport4.37E-03
83GO:0009611: response to wounding4.46E-03
84GO:0042546: cell wall biogenesis4.54E-03
85GO:0010192: mucilage biosynthetic process4.64E-03
86GO:0009970: cellular response to sulfate starvation4.64E-03
87GO:0072593: reactive oxygen species metabolic process5.12E-03
88GO:0002213: defense response to insect5.62E-03
89GO:0071365: cellular response to auxin stimulus5.62E-03
90GO:0006790: sulfur compound metabolic process5.62E-03
91GO:0012501: programmed cell death5.62E-03
92GO:0009809: lignin biosynthetic process5.88E-03
93GO:0051603: proteolysis involved in cellular protein catabolic process6.09E-03
94GO:0010102: lateral root morphogenesis6.14E-03
95GO:0006108: malate metabolic process6.14E-03
96GO:0046274: lignin catabolic process6.14E-03
97GO:0006829: zinc II ion transport6.14E-03
98GO:0002237: response to molecule of bacterial origin6.67E-03
99GO:0009266: response to temperature stimulus6.67E-03
100GO:0046854: phosphatidylinositol phosphorylation7.22E-03
101GO:0007031: peroxisome organization7.22E-03
102GO:0042343: indole glucosinolate metabolic process7.22E-03
103GO:0010167: response to nitrate7.22E-03
104GO:0009626: plant-type hypersensitive response7.40E-03
105GO:0006636: unsaturated fatty acid biosynthetic process7.79E-03
106GO:0019762: glucosinolate catabolic process7.79E-03
107GO:0009624: response to nematode8.37E-03
108GO:0006366: transcription from RNA polymerase II promoter9.59E-03
109GO:0003333: amino acid transmembrane transport9.59E-03
110GO:0048511: rhythmic process9.59E-03
111GO:0098542: defense response to other organism9.59E-03
112GO:0009269: response to desiccation9.59E-03
113GO:0016226: iron-sulfur cluster assembly1.02E-02
114GO:0035428: hexose transmembrane transport1.02E-02
115GO:0019748: secondary metabolic process1.02E-02
116GO:0009625: response to insect1.09E-02
117GO:0009058: biosynthetic process1.11E-02
118GO:0006817: phosphate ion transport1.15E-02
119GO:0042744: hydrogen peroxide catabolic process1.20E-02
120GO:0009414: response to water deprivation1.21E-02
121GO:0042335: cuticle development1.29E-02
122GO:0010087: phloem or xylem histogenesis1.29E-02
123GO:0010154: fruit development1.36E-02
124GO:0006662: glycerol ether metabolic process1.36E-02
125GO:0046323: glucose import1.36E-02
126GO:0009734: auxin-activated signaling pathway1.37E-02
127GO:0006814: sodium ion transport1.43E-02
128GO:0009733: response to auxin1.50E-02
129GO:0055072: iron ion homeostasis1.50E-02
130GO:0016132: brassinosteroid biosynthetic process1.58E-02
131GO:0071554: cell wall organization or biogenesis1.58E-02
132GO:0019761: glucosinolate biosynthetic process1.65E-02
133GO:0009617: response to bacterium1.73E-02
134GO:0030163: protein catabolic process1.73E-02
135GO:0010252: auxin homeostasis1.81E-02
136GO:0016126: sterol biosynthetic process2.05E-02
137GO:0009627: systemic acquired resistance2.22E-02
138GO:0048573: photoperiodism, flowering2.30E-02
139GO:0008219: cell death2.47E-02
140GO:0010311: lateral root formation2.56E-02
141GO:0009813: flavonoid biosynthetic process2.56E-02
142GO:0009407: toxin catabolic process2.65E-02
143GO:0010119: regulation of stomatal movement2.74E-02
144GO:0006865: amino acid transport2.84E-02
145GO:0034599: cellular response to oxidative stress3.02E-02
146GO:0044550: secondary metabolite biosynthetic process3.03E-02
147GO:0042542: response to hydrogen peroxide3.41E-02
148GO:0031347: regulation of defense response4.02E-02
149GO:0042538: hyperosmotic salinity response4.12E-02
150GO:0006813: potassium ion transport4.34E-02
151GO:0042742: defense response to bacterium4.42E-02
152GO:0006979: response to oxidative stress4.46E-02
153GO:0008152: metabolic process4.52E-02
154GO:0006857: oligopeptide transport4.55E-02
155GO:0048316: seed development4.99E-02
RankGO TermAdjusted P value
1GO:0080124: pheophytinase activity0.00E+00
2GO:0046316: gluconokinase activity0.00E+00
3GO:0032441: pheophorbide a oxygenase activity0.00E+00
4GO:0003842: 1-pyrroline-5-carboxylate dehydrogenase activity0.00E+00
5GO:0033961: cis-stilbene-oxide hydrolase activity0.00E+00
6GO:0010176: homogentisate phytyltransferase activity0.00E+00
7GO:0080109: indole-3-acetonitrile nitrile hydratase activity0.00E+00
8GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity0.00E+00
9GO:0016229: steroid dehydrogenase activity0.00E+00
10GO:0004587: ornithine-oxo-acid transaminase activity0.00E+00
11GO:0008531: riboflavin kinase activity0.00E+00
12GO:0008863: formate dehydrogenase (NAD+) activity0.00E+00
13GO:0048244: phytanoyl-CoA dioxygenase activity0.00E+00
14GO:0009045: xylose isomerase activity0.00E+00
15GO:0070401: NADP+ binding0.00E+00
16GO:0047782: coniferin beta-glucosidase activity0.00E+00
17GO:0080061: indole-3-acetonitrile nitrilase activity5.82E-09
18GO:0000257: nitrilase activity2.84E-08
19GO:0004108: citrate (Si)-synthase activity1.08E-05
20GO:0004867: serine-type endopeptidase inhibitor activity1.95E-05
21GO:0015103: inorganic anion transmembrane transporter activity9.14E-05
22GO:0004033: aldo-keto reductase (NADP) activity1.18E-04
23GO:0045437: uridine nucleosidase activity1.60E-04
24GO:0015185: gamma-aminobutyric acid transmembrane transporter activity1.60E-04
25GO:0016682: oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor1.60E-04
26GO:0000248: C-5 sterol desaturase activity1.60E-04
27GO:0001530: lipopolysaccharide binding1.60E-04
28GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.80E-04
29GO:0051213: dioxygenase activity1.94E-04
30GO:0009672: auxin:proton symporter activity2.16E-04
31GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity2.16E-04
32GO:0016798: hydrolase activity, acting on glycosyl bonds2.43E-04
33GO:0047517: 1,4-beta-D-xylan synthase activity3.65E-04
34GO:0004566: beta-glucuronidase activity3.65E-04
35GO:0004047: aminomethyltransferase activity3.65E-04
36GO:0047724: inosine nucleosidase activity3.65E-04
37GO:0003919: FMN adenylyltransferase activity3.65E-04
38GO:0005507: copper ion binding4.28E-04
39GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity5.97E-04
40GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity5.97E-04
41GO:0010277: chlorophyllide a oxygenase [overall] activity5.97E-04
42GO:0046872: metal ion binding6.25E-04
43GO:0008324: cation transmembrane transporter activity6.66E-04
44GO:0008106: alcohol dehydrogenase (NADP+) activity8.53E-04
45GO:0015186: L-glutamine transmembrane transporter activity8.53E-04
46GO:0016760: cellulose synthase (UDP-forming) activity8.67E-04
47GO:0030551: cyclic nucleotide binding1.09E-03
48GO:0009044: xylan 1,4-beta-xylosidase activity1.13E-03
49GO:0050302: indole-3-acetaldehyde oxidase activity1.13E-03
50GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor1.13E-03
51GO:0004301: epoxide hydrolase activity1.13E-03
52GO:0004659: prenyltransferase activity1.13E-03
53GO:0080032: methyl jasmonate esterase activity1.13E-03
54GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds1.13E-03
55GO:0004356: glutamate-ammonia ligase activity1.43E-03
56GO:0016762: xyloglucan:xyloglucosyl transferase activity1.44E-03
57GO:0004197: cysteine-type endopeptidase activity1.53E-03
58GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.58E-03
59GO:0016759: cellulose synthase activity1.74E-03
60GO:0004029: aldehyde dehydrogenase (NAD) activity1.76E-03
61GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity1.76E-03
62GO:0004462: lactoylglutathione lyase activity1.76E-03
63GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity1.76E-03
64GO:0015081: sodium ion transmembrane transporter activity1.76E-03
65GO:0016615: malate dehydrogenase activity1.76E-03
66GO:0004866: endopeptidase inhibitor activity1.76E-03
67GO:0008200: ion channel inhibitor activity1.76E-03
68GO:0080030: methyl indole-3-acetate esterase activity1.76E-03
69GO:0015562: efflux transmembrane transporter activity1.76E-03
70GO:0030170: pyridoxal phosphate binding1.80E-03
71GO:0030060: L-malate dehydrogenase activity2.11E-03
72GO:0005261: cation channel activity2.11E-03
73GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.11E-03
74GO:0005242: inward rectifier potassium channel activity2.11E-03
75GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.11E-03
76GO:0102483: scopolin beta-glucosidase activity2.43E-03
77GO:0042802: identical protein binding3.20E-03
78GO:0046914: transition metal ion binding3.29E-03
79GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.40E-03
80GO:0008422: beta-glucosidase activity3.71E-03
81GO:0005384: manganese ion transmembrane transporter activity4.17E-03
82GO:0015112: nitrate transmembrane transporter activity4.17E-03
83GO:0016788: hydrolase activity, acting on ester bonds4.21E-03
84GO:0015386: potassium:proton antiporter activity5.12E-03
85GO:0047372: acylglycerol lipase activity5.12E-03
86GO:0052716: hydroquinone:oxygen oxidoreductase activity5.62E-03
87GO:0016740: transferase activity5.84E-03
88GO:0016298: lipase activity6.09E-03
89GO:0008234: cysteine-type peptidase activity6.51E-03
90GO:0015171: amino acid transmembrane transporter activity6.51E-03
91GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups7.18E-03
92GO:0004190: aspartic-type endopeptidase activity7.22E-03
93GO:0030552: cAMP binding7.22E-03
94GO:0030553: cGMP binding7.22E-03
95GO:0022857: transmembrane transporter activity7.88E-03
96GO:0008134: transcription factor binding8.38E-03
97GO:0001046: core promoter sequence-specific DNA binding8.38E-03
98GO:0051536: iron-sulfur cluster binding8.38E-03
99GO:0031418: L-ascorbic acid binding8.38E-03
100GO:0005385: zinc ion transmembrane transporter activity8.38E-03
101GO:0005216: ion channel activity8.97E-03
102GO:0035251: UDP-glucosyltransferase activity9.59E-03
103GO:0047134: protein-disulfide reductase activity1.22E-02
104GO:0016787: hydrolase activity1.27E-02
105GO:0005249: voltage-gated potassium channel activity1.29E-02
106GO:0046873: metal ion transmembrane transporter activity1.36E-02
107GO:0005355: glucose transmembrane transporter activity1.43E-02
108GO:0004791: thioredoxin-disulfide reductase activity1.43E-02
109GO:0016853: isomerase activity1.43E-02
110GO:0015385: sodium:proton antiporter activity1.73E-02
111GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.73E-02
112GO:0008483: transaminase activity1.89E-02
113GO:0016722: oxidoreductase activity, oxidizing metal ions1.89E-02
114GO:0016413: O-acetyltransferase activity1.97E-02
115GO:0004601: peroxidase activity2.25E-02
116GO:0020037: heme binding2.48E-02
117GO:0050897: cobalt ion binding2.74E-02
118GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.74E-02
119GO:0052689: carboxylic ester hydrolase activity3.08E-02
120GO:0004364: glutathione transferase activity3.41E-02
121GO:0004185: serine-type carboxypeptidase activity3.51E-02
122GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.60E-02
123GO:0051537: 2 iron, 2 sulfur cluster binding3.71E-02
124GO:0005198: structural molecule activity3.81E-02
125GO:0015293: symporter activity3.81E-02
126GO:0051287: NAD binding4.02E-02
127GO:0005506: iron ion binding4.33E-02
RankGO TermAdjusted P value
1GO:0005773: vacuole2.05E-05
2GO:0005759: mitochondrial matrix3.30E-05
3GO:0005777: peroxisome4.42E-05
4GO:0005764: lysosome4.38E-04
5GO:0005576: extracellular region6.94E-04
6GO:0048046: apoplast1.19E-03
7GO:0055035: plastid thylakoid membrane1.43E-03
8GO:0010168: ER body1.76E-03
9GO:0009705: plant-type vacuole membrane2.37E-03
10GO:0005615: extracellular space2.73E-03
11GO:0005779: integral component of peroxisomal membrane3.29E-03
12GO:0005774: vacuolar membrane3.30E-03
13GO:0010494: cytoplasmic stress granule3.72E-03
14GO:0005794: Golgi apparatus4.04E-03
15GO:0005765: lysosomal membrane5.12E-03
16GO:0016020: membrane5.36E-03
17GO:0005578: proteinaceous extracellular matrix6.14E-03
18GO:0005737: cytoplasm9.42E-03
19GO:0009506: plasmodesma1.03E-02
20GO:0005778: peroxisomal membrane1.89E-02
21GO:0000932: P-body2.05E-02
22GO:0005789: endoplasmic reticulum membrane2.37E-02
23GO:0019005: SCF ubiquitin ligase complex2.47E-02
24GO:0000325: plant-type vacuole2.74E-02
25GO:0005829: cytosol2.89E-02
26GO:0031977: thylakoid lumen3.31E-02
27GO:0005618: cell wall3.58E-02
28GO:0005783: endoplasmic reticulum3.74E-02
29GO:0005886: plasma membrane3.87E-02
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Gene type



Gene DE type