co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G60030

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0035024: negative regulation of Rho protein signal transduction	0.00E+00
3	GO:0010025: wax biosynthetic process	1.55E-07
4	GO:0042335: cuticle development	8.48E-07
5	GO:0000038: very long-chain fatty acid metabolic process	3.76E-06
6	GO:0009913: epidermal cell differentiation	2.87E-05
7	GO:0009827: plant-type cell wall modification	9.00E-05
8	GO:0097298: regulation of nucleus size	1.16E-04
9	GO:0009865: pollen tube adhesion	1.16E-04
10	GO:0030244: cellulose biosynthetic process	1.50E-04
11	GO:0045490: pectin catabolic process	1.77E-04
12	GO:0030148: sphingolipid biosynthetic process	1.86E-04
13	GO:0006470: protein dephosphorylation	2.22E-04
14	GO:0006898: receptor-mediated endocytosis	2.69E-04
15	GO:1901679: nucleotide transmembrane transport	2.69E-04
16	GO:0031407: oxylipin metabolic process	2.69E-04
17	GO:0010289: homogalacturonan biosynthetic process	2.69E-04
18	GO:0080121: AMP transport	4.45E-04
19	GO:0051211: anisotropic cell growth	4.45E-04
20	GO:0044210: 'de novo' CTP biosynthetic process	4.45E-04
21	GO:0016045: detection of bacterium	4.45E-04
22	GO:0010359: regulation of anion channel activity	4.45E-04
23	GO:0090630: activation of GTPase activity	4.45E-04
24	GO:0001944: vasculature development	5.64E-04
25	GO:0043481: anthocyanin accumulation in tissues in response to UV light	6.38E-04
26	GO:0042545: cell wall modification	6.57E-04
27	GO:0070417: cellular response to cold	6.61E-04
28	GO:0015867: ATP transport	8.47E-04
29	GO:0046345: abscisic acid catabolic process	8.47E-04
30	GO:0051365: cellular response to potassium ion starvation	8.47E-04
31	GO:0006656: phosphatidylcholine biosynthetic process	1.07E-03
32	GO:0048497: maintenance of floral organ identity	1.07E-03
33	GO:0006665: sphingolipid metabolic process	1.07E-03
34	GO:0006633: fatty acid biosynthetic process	1.19E-03
35	GO:0035435: phosphate ion transmembrane transport	1.31E-03
36	GO:0015866: ADP transport	1.31E-03
37	GO:2000033: regulation of seed dormancy process	1.56E-03
38	GO:0045926: negative regulation of growth	1.56E-03
39	GO:0098655: cation transmembrane transport	1.56E-03
40	GO:0050829: defense response to Gram-negative bacterium	1.84E-03
41	GO:0030497: fatty acid elongation	1.84E-03
42	GO:0008610: lipid biosynthetic process	2.13E-03
43	GO:0009819: drought recovery	2.13E-03
44	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	2.13E-03
45	GO:0007155: cell adhesion	2.13E-03
46	GO:0006997: nucleus organization	2.43E-03
47	GO:0009409: response to cold	2.57E-03
48	GO:0006631: fatty acid metabolic process	2.58E-03
49	GO:0098656: anion transmembrane transport	2.74E-03
50	GO:0042761: very long-chain fatty acid biosynthetic process	3.07E-03
51	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.18E-03
52	GO:0010629: negative regulation of gene expression	3.41E-03
53	GO:0052544: defense response by callose deposition in cell wall	3.76E-03
54	GO:0048765: root hair cell differentiation	3.76E-03
55	GO:0016024: CDP-diacylglycerol biosynthetic process	4.13E-03
56	GO:0048367: shoot system development	4.58E-03
57	GO:0010143: cutin biosynthetic process	4.89E-03
58	GO:0006355: regulation of transcription, DNA-templated	5.07E-03
59	GO:0048364: root development	5.27E-03
60	GO:0070588: calcium ion transmembrane transport	5.29E-03
61	GO:0009624: response to nematode	5.34E-03
62	GO:0009833: plant-type primary cell wall biogenesis	5.70E-03
63	GO:0009863: salicylic acid mediated signaling pathway	6.12E-03
64	GO:0010187: negative regulation of seed germination	6.12E-03
65	GO:2000377: regulation of reactive oxygen species metabolic process	6.12E-03
66	GO:0007017: microtubule-based process	6.56E-03
67	GO:0031408: oxylipin biosynthetic process	7.00E-03
68	GO:0019915: lipid storage	7.00E-03
69	GO:0000226: microtubule cytoskeleton organization	9.38E-03
70	GO:0045489: pectin biosynthetic process	9.89E-03
71	GO:0048868: pollen tube development	9.89E-03
72	GO:0010268: brassinosteroid homeostasis	9.89E-03
73	GO:0009739: response to gibberellin	1.03E-02
74	GO:0009416: response to light stimulus	1.04E-02
75	GO:0048825: cotyledon development	1.09E-02
76	GO:0000302: response to reactive oxygen species	1.15E-02
77	GO:0016132: brassinosteroid biosynthetic process	1.15E-02
78	GO:0010583: response to cyclopentenone	1.20E-02
79	GO:0006351: transcription, DNA-templated	1.27E-02
80	GO:0019760: glucosinolate metabolic process	1.31E-02
81	GO:0009639: response to red or far red light	1.31E-02
82	GO:0016125: sterol metabolic process	1.31E-02
83	GO:0010029: regulation of seed germination	1.55E-02
84	GO:0080167: response to karrikin	1.78E-02
85	GO:0010200: response to chitin	1.84E-02
86	GO:0009832: plant-type cell wall biogenesis	1.86E-02
87	GO:0009834: plant-type secondary cell wall biogenesis	1.92E-02
88	GO:0009867: jasmonic acid mediated signaling pathway	2.12E-02
89	GO:0006839: mitochondrial transport	2.33E-02
90	GO:0016310: phosphorylation	2.44E-02
91	GO:0032259: methylation	2.51E-02
92	GO:0071555: cell wall organization	2.52E-02
93	GO:0009640: photomorphogenesis	2.54E-02
94	GO:0006979: response to oxidative stress	2.55E-02
95	GO:0006629: lipid metabolic process	2.62E-02
96	GO:0009644: response to high light intensity	2.69E-02
97	GO:0009846: pollen germination	2.99E-02
98	GO:0042538: hyperosmotic salinity response	2.99E-02
99	GO:0006857: oligopeptide transport	3.30E-02
100	GO:0009873: ethylene-activated signaling pathway	3.38E-02
101	GO:0009740: gibberellic acid mediated signaling pathway	3.87E-02
102	GO:0009058: biosynthetic process	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0017048: Rho GTPase binding	0.00E+00
2	GO:0052631: sphingolipid delta-8 desaturase activity	0.00E+00
3	GO:0003883: CTP synthase activity	6.10E-06
4	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.12E-05
5	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.12E-05
6	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.12E-05
7	GO:0004105: choline-phosphate cytidylyltransferase activity	1.16E-04
8	GO:0043565: sequence-specific DNA binding	2.63E-04
9	GO:0016629: 12-oxophytodienoate reductase activity	2.69E-04
10	GO:0017022: myosin binding	2.69E-04
11	GO:0017040: ceramidase activity	2.69E-04
12	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	4.45E-04
13	GO:0070330: aromatase activity	4.45E-04
14	GO:0045330: aspartyl esterase activity	4.98E-04
15	GO:0030599: pectinesterase activity	6.33E-04
16	GO:0016746: transferase activity, transferring acyl groups	7.07E-04
17	GO:0004722: protein serine/threonine phosphatase activity	7.68E-04
18	GO:0080122: AMP transmembrane transporter activity	1.07E-03
19	GO:0018685: alkane 1-monooxygenase activity	1.07E-03
20	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.07E-03
21	GO:0009922: fatty acid elongase activity	1.07E-03
22	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.31E-03
23	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.31E-03
24	GO:0005347: ATP transmembrane transporter activity	1.56E-03
25	GO:0015217: ADP transmembrane transporter activity	1.56E-03
26	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.64E-03
27	GO:0005096: GTPase activator activity	1.81E-03
28	GO:0016209: antioxidant activity	2.13E-03
29	GO:0000989: transcription factor activity, transcription factor binding	2.74E-03
30	GO:0015114: phosphate ion transmembrane transporter activity	4.50E-03
31	GO:0005388: calcium-transporting ATPase activity	4.50E-03
32	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.89E-03
33	GO:0003700: transcription factor activity, sequence-specific DNA binding	5.44E-03
34	GO:0004707: MAP kinase activity	7.00E-03
35	GO:0008289: lipid binding	7.60E-03
36	GO:0030570: pectate lyase activity	7.92E-03
37	GO:0016760: cellulose synthase (UDP-forming) activity	7.92E-03
38	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	8.59E-03
39	GO:0010181: FMN binding	1.04E-02
40	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.17E-02
41	GO:0016791: phosphatase activity	1.31E-02
42	GO:0016759: cellulose synthase activity	1.31E-02
43	GO:0005200: structural constituent of cytoskeleton	1.37E-02
44	GO:0016413: O-acetyltransferase activity	1.43E-02
45	GO:0016301: kinase activity	1.47E-02
46	GO:0046872: metal ion binding	1.81E-02
47	GO:0004674: protein serine/threonine kinase activity	2.40E-02
48	GO:0044212: transcription regulatory region DNA binding	2.52E-02
49	GO:0043621: protein self-association	2.69E-02
50	GO:0035091: phosphatidylinositol binding	2.69E-02
51	GO:0031625: ubiquitin protein ligase binding	3.38E-02
52	GO:0016491: oxidoreductase activity	3.55E-02
53	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.63E-02
54	GO:0016874: ligase activity	3.87E-02
55	GO:0004672: protein kinase activity	4.06E-02

Rank	GO Term	Adjusted P value
1	GO:0009505: plant-type cell wall	1.12E-04
2	GO:0070382: exocytic vesicle	1.16E-04
3	GO:0030133: transport vesicle	2.69E-04
4	GO:0005652: nuclear lamina	4.45E-04
5	GO:0045177: apical part of cell	6.38E-04
6	GO:0005789: endoplasmic reticulum membrane	8.13E-04
7	GO:0000793: condensed chromosome	1.31E-03
8	GO:0005618: cell wall	1.62E-03
9	GO:0000794: condensed nuclear chromosome	1.84E-03
10	GO:0034399: nuclear periphery	2.13E-03
11	GO:0045298: tubulin complex	2.74E-03
12	GO:0005938: cell cortex	4.50E-03
13	GO:0005768: endosome	5.39E-03
14	GO:0005783: endoplasmic reticulum	5.57E-03
15	GO:0005886: plasma membrane	9.30E-03
16	GO:0031965: nuclear membrane	1.09E-02
17	GO:0046658: anchored component of plasma membrane	1.22E-02
18	GO:0071944: cell periphery	1.26E-02
19	GO:0005802: trans-Golgi network	1.88E-02
20	GO:0005622: intracellular	2.14E-02
21	GO:0090406: pollen tube	2.54E-02
22	GO:0016021: integral component of membrane	3.07E-02
23	GO:0010008: endosome membrane	3.63E-02
24	GO:0022626: cytosolic ribosome	4.44E-02
25	GO:0005654: nucleoplasm	4.65E-02