GO Enrichment Analysis of Co-expressed Genes with
AT3G59990
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006592: ornithine biosynthetic process | 0.00E+00 |
| 2 | GO:2001006: regulation of cellulose biosynthetic process | 6.10E-05 |
| 3 | GO:0031468: nuclear envelope reassembly | 6.10E-05 |
| 4 | GO:0051603: proteolysis involved in cellular protein catabolic process | 1.45E-04 |
| 5 | GO:0006432: phenylalanyl-tRNA aminoacylation | 1.48E-04 |
| 6 | GO:0071668: plant-type cell wall assembly | 1.48E-04 |
| 7 | GO:0006511: ubiquitin-dependent protein catabolic process | 1.50E-04 |
| 8 | GO:0046417: chorismate metabolic process | 2.51E-04 |
| 9 | GO:0010452: histone H3-K36 methylation | 2.51E-04 |
| 10 | GO:0008333: endosome to lysosome transport | 2.51E-04 |
| 11 | GO:1904278: positive regulation of wax biosynthetic process | 2.51E-04 |
| 12 | GO:0001676: long-chain fatty acid metabolic process | 3.65E-04 |
| 13 | GO:0051259: protein oligomerization | 3.65E-04 |
| 14 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 3.65E-04 |
| 15 | GO:0071249: cellular response to nitrate | 4.88E-04 |
| 16 | GO:0010286: heat acclimation | 5.29E-04 |
| 17 | GO:0051568: histone H3-K4 methylation | 7.57E-04 |
| 18 | GO:0043248: proteasome assembly | 7.57E-04 |
| 19 | GO:0050821: protein stabilization | 1.21E-03 |
| 20 | GO:0006526: arginine biosynthetic process | 1.38E-03 |
| 21 | GO:0009808: lignin metabolic process | 1.38E-03 |
| 22 | GO:0048589: developmental growth | 1.55E-03 |
| 23 | GO:0009245: lipid A biosynthetic process | 1.55E-03 |
| 24 | GO:0016441: posttranscriptional gene silencing | 1.92E-03 |
| 25 | GO:0009073: aromatic amino acid family biosynthetic process | 2.12E-03 |
| 26 | GO:0006378: mRNA polyadenylation | 2.12E-03 |
| 27 | GO:0010152: pollen maturation | 2.32E-03 |
| 28 | GO:0016925: protein sumoylation | 2.32E-03 |
| 29 | GO:0006446: regulation of translational initiation | 2.74E-03 |
| 30 | GO:0007030: Golgi organization | 2.96E-03 |
| 31 | GO:0034976: response to endoplasmic reticulum stress | 3.18E-03 |
| 32 | GO:0046686: response to cadmium ion | 3.34E-03 |
| 33 | GO:0006406: mRNA export from nucleus | 3.42E-03 |
| 34 | GO:0006289: nucleotide-excision repair | 3.42E-03 |
| 35 | GO:0016226: iron-sulfur cluster assembly | 4.15E-03 |
| 36 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 4.39E-03 |
| 37 | GO:0048443: stamen development | 4.65E-03 |
| 38 | GO:0006457: protein folding | 4.83E-03 |
| 39 | GO:0042147: retrograde transport, endosome to Golgi | 4.92E-03 |
| 40 | GO:0080022: primary root development | 5.19E-03 |
| 41 | GO:0008360: regulation of cell shape | 5.46E-03 |
| 42 | GO:0061025: membrane fusion | 5.74E-03 |
| 43 | GO:0006414: translational elongation | 5.77E-03 |
| 44 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 6.32E-03 |
| 45 | GO:0010193: response to ozone | 6.32E-03 |
| 46 | GO:0010090: trichome morphogenesis | 6.91E-03 |
| 47 | GO:0045454: cell redox homeostasis | 9.00E-03 |
| 48 | GO:0009817: defense response to fungus, incompatible interaction | 9.82E-03 |
| 49 | GO:0048527: lateral root development | 1.09E-02 |
| 50 | GO:0009910: negative regulation of flower development | 1.09E-02 |
| 51 | GO:0000724: double-strand break repair via homologous recombination | 1.12E-02 |
| 52 | GO:0006631: fatty acid metabolic process | 1.31E-02 |
| 53 | GO:0009965: leaf morphogenesis | 1.51E-02 |
| 54 | GO:0010224: response to UV-B | 1.76E-02 |
| 55 | GO:0009908: flower development | 1.79E-02 |
| 56 | GO:0006412: translation | 2.07E-02 |
| 57 | GO:0016569: covalent chromatin modification | 2.11E-02 |
| 58 | GO:0018105: peptidyl-serine phosphorylation | 2.25E-02 |
| 59 | GO:0000398: mRNA splicing, via spliceosome | 2.44E-02 |
| 60 | GO:0006633: fatty acid biosynthetic process | 3.04E-02 |
| 61 | GO:0009651: response to salt stress | 3.90E-02 |
| 62 | GO:0009826: unidimensional cell growth | 4.31E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008777: acetylornithine deacetylase activity | 0.00E+00 |
| 2 | GO:0004298: threonine-type endopeptidase activity | 3.29E-10 |
| 3 | GO:0008233: peptidase activity | 3.51E-07 |
| 4 | GO:0030544: Hsp70 protein binding | 6.10E-05 |
| 5 | GO:1990585: hydroxyproline O-arabinosyltransferase activity | 1.48E-04 |
| 6 | GO:0004106: chorismate mutase activity | 1.48E-04 |
| 7 | GO:0004826: phenylalanine-tRNA ligase activity | 1.48E-04 |
| 8 | GO:0043130: ubiquitin binding | 1.63E-04 |
| 9 | GO:0008430: selenium binding | 2.51E-04 |
| 10 | GO:0070628: proteasome binding | 4.88E-04 |
| 11 | GO:0010011: auxin binding | 4.88E-04 |
| 12 | GO:0008237: metallopeptidase activity | 5.29E-04 |
| 13 | GO:0031386: protein tag | 6.19E-04 |
| 14 | GO:0031593: polyubiquitin binding | 7.57E-04 |
| 15 | GO:0031177: phosphopantetheine binding | 7.57E-04 |
| 16 | GO:0051117: ATPase binding | 7.57E-04 |
| 17 | GO:0000035: acyl binding | 9.01E-04 |
| 18 | GO:0102391: decanoate--CoA ligase activity | 9.01E-04 |
| 19 | GO:0003746: translation elongation factor activity | 9.58E-04 |
| 20 | GO:0004467: long-chain fatty acid-CoA ligase activity | 1.05E-03 |
| 21 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 1.21E-03 |
| 22 | GO:0008327: methyl-CpG binding | 2.12E-03 |
| 23 | GO:0000049: tRNA binding | 2.32E-03 |
| 24 | GO:0000166: nucleotide binding | 3.48E-03 |
| 25 | GO:0043424: protein histidine kinase binding | 3.65E-03 |
| 26 | GO:0003756: protein disulfide isomerase activity | 4.65E-03 |
| 27 | GO:0003735: structural constituent of ribosome | 4.84E-03 |
| 28 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 6.91E-03 |
| 29 | GO:0003684: damaged DNA binding | 7.21E-03 |
| 30 | GO:0050897: cobalt ion binding | 1.09E-02 |
| 31 | GO:0003729: mRNA binding | 1.41E-02 |
| 32 | GO:0008565: protein transporter activity | 2.94E-02 |
| 33 | GO:0005515: protein binding | 3.18E-02 |
| 34 | GO:0003743: translation initiation factor activity | 3.63E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0097361: CIA complex | 0.00E+00 |
| 2 | GO:0000502: proteasome complex | 4.02E-11 |
| 3 | GO:0005839: proteasome core complex | 3.29E-10 |
| 4 | GO:0005829: cytosol | 2.28E-07 |
| 5 | GO:0019773: proteasome core complex, alpha-subunit complex | 3.35E-05 |
| 6 | GO:0022626: cytosolic ribosome | 7.20E-05 |
| 7 | GO:0005853: eukaryotic translation elongation factor 1 complex | 2.51E-04 |
| 8 | GO:0046861: glyoxysomal membrane | 2.51E-04 |
| 9 | GO:0005849: mRNA cleavage factor complex | 3.65E-04 |
| 10 | GO:0005737: cytoplasm | 4.14E-04 |
| 11 | GO:0016593: Cdc73/Paf1 complex | 4.88E-04 |
| 12 | GO:0005771: multivesicular body | 7.57E-04 |
| 13 | GO:0030904: retromer complex | 7.57E-04 |
| 14 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 8.96E-04 |
| 15 | GO:0005801: cis-Golgi network | 9.01E-04 |
| 16 | GO:0009514: glyoxysome | 1.38E-03 |
| 17 | GO:0005840: ribosome | 1.83E-03 |
| 18 | GO:0005834: heterotrimeric G-protein complex | 2.04E-03 |
| 19 | GO:0008541: proteasome regulatory particle, lid subcomplex | 2.12E-03 |
| 20 | GO:0005732: small nucleolar ribonucleoprotein complex | 2.50E-03 |
| 21 | GO:0070469: respiratory chain | 3.65E-03 |
| 22 | GO:0005730: nucleolus | 3.79E-03 |
| 23 | GO:0005794: Golgi apparatus | 6.38E-03 |
| 24 | GO:0015934: large ribosomal subunit | 1.09E-02 |
| 25 | GO:0031902: late endosome membrane | 1.31E-02 |
| 26 | GO:0005759: mitochondrial matrix | 3.04E-02 |
| 27 | GO:0005802: trans-Golgi network | 3.17E-02 |
| 28 | GO:0005634: nucleus | 3.54E-02 |
| 29 | GO:0005768: endosome | 3.60E-02 |
| 30 | GO:0022627: cytosolic small ribosomal subunit | 3.97E-02 |
| 31 | GO:0005774: vacuolar membrane | 4.06E-02 |