Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G59810

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
2GO:0090239: regulation of histone H4 acetylation0.00E+00
3GO:0001881: receptor recycling0.00E+00
4GO:0000740: nuclear membrane fusion0.00E+00
5GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
6GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
7GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
8GO:0007530: sex determination0.00E+00
9GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
10GO:0006412: translation1.37E-113
11GO:0042254: ribosome biogenesis5.46E-45
12GO:0006511: ubiquitin-dependent protein catabolic process2.74E-09
13GO:0000027: ribosomal large subunit assembly3.31E-09
14GO:0000028: ribosomal small subunit assembly3.28E-08
15GO:0000387: spliceosomal snRNP assembly8.81E-06
16GO:0006626: protein targeting to mitochondrion3.12E-05
17GO:0009735: response to cytokinin7.49E-05
18GO:0000398: mRNA splicing, via spliceosome8.15E-05
19GO:1902626: assembly of large subunit precursor of preribosome8.54E-05
20GO:0051603: proteolysis involved in cellular protein catabolic process1.55E-04
21GO:0043248: proteasome assembly6.06E-04
22GO:0046686: response to cadmium ion6.58E-04
23GO:1990258: histone glutamine methylation7.97E-04
24GO:0006475: internal protein amino acid acetylation7.97E-04
25GO:0015801: aromatic amino acid transport7.97E-04
26GO:0017198: N-terminal peptidyl-serine acetylation7.97E-04
27GO:0030490: maturation of SSU-rRNA7.97E-04
28GO:2001006: regulation of cellulose biosynthetic process7.97E-04
29GO:0000494: box C/D snoRNA 3'-end processing7.97E-04
30GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.97E-04
31GO:0018002: N-terminal peptidyl-glutamic acid acetylation7.97E-04
32GO:0006407: rRNA export from nucleus7.97E-04
33GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.97E-04
34GO:0009651: response to salt stress8.00E-04
35GO:0009955: adaxial/abaxial pattern specification8.01E-04
36GO:0015992: proton transport1.01E-03
37GO:0061077: chaperone-mediated protein folding1.01E-03
38GO:0006414: translational elongation1.15E-03
39GO:0001510: RNA methylation1.55E-03
40GO:0045905: positive regulation of translational termination1.72E-03
41GO:0071668: plant-type cell wall assembly1.72E-03
42GO:0000413: protein peptidyl-prolyl isomerization1.72E-03
43GO:0034243: regulation of transcription elongation from RNA polymerase II promoter1.72E-03
44GO:0045901: positive regulation of translational elongation1.72E-03
45GO:0045041: protein import into mitochondrial intermembrane space1.72E-03
46GO:0043981: histone H4-K5 acetylation1.72E-03
47GO:0006452: translational frameshifting1.72E-03
48GO:0010198: synergid death1.72E-03
49GO:0015786: UDP-glucose transport1.72E-03
50GO:0051788: response to misfolded protein1.72E-03
51GO:0006432: phenylalanyl-tRNA aminoacylation1.72E-03
52GO:0009245: lipid A biosynthetic process1.86E-03
53GO:0015031: protein transport2.11E-03
54GO:0009150: purine ribonucleotide metabolic process2.86E-03
55GO:1904278: positive regulation of wax biosynthetic process2.86E-03
56GO:0002181: cytoplasmic translation2.86E-03
57GO:0045793: positive regulation of cell size2.86E-03
58GO:0015783: GDP-fucose transport2.86E-03
59GO:0034227: tRNA thio-modification2.86E-03
60GO:0042256: mature ribosome assembly2.86E-03
61GO:0090506: axillary shoot meristem initiation2.86E-03
62GO:0010452: histone H3-K36 methylation2.86E-03
63GO:0032786: positive regulation of DNA-templated transcription, elongation2.86E-03
64GO:0008333: endosome to lysosome transport2.86E-03
65GO:0006913: nucleocytoplasmic transport2.99E-03
66GO:0016925: protein sumoylation3.43E-03
67GO:0006820: anion transport3.43E-03
68GO:0006228: UTP biosynthetic process4.16E-03
69GO:0006164: purine nucleotide biosynthetic process4.16E-03
70GO:0006168: adenine salvage4.16E-03
71GO:0071786: endoplasmic reticulum tubular network organization4.16E-03
72GO:0009558: embryo sac cellularization4.16E-03
73GO:0032877: positive regulation of DNA endoreduplication4.16E-03
74GO:0046836: glycolipid transport4.16E-03
75GO:0006166: purine ribonucleoside salvage4.16E-03
76GO:0070301: cellular response to hydrogen peroxide4.16E-03
77GO:0051085: chaperone mediated protein folding requiring cofactor4.16E-03
78GO:0009647: skotomorphogenesis4.16E-03
79GO:0006241: CTP biosynthetic process4.16E-03
80GO:0072334: UDP-galactose transmembrane transport4.16E-03
81GO:0010971: positive regulation of G2/M transition of mitotic cell cycle4.16E-03
82GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity4.16E-03
83GO:0006165: nucleoside diphosphate phosphorylation4.16E-03
84GO:2000032: regulation of secondary shoot formation5.62E-03
85GO:0051781: positive regulation of cell division5.62E-03
86GO:0042274: ribosomal small subunit biogenesis5.62E-03
87GO:0010387: COP9 signalosome assembly5.62E-03
88GO:0006183: GTP biosynthetic process5.62E-03
89GO:0010363: regulation of plant-type hypersensitive response5.62E-03
90GO:0006621: protein retention in ER lumen5.62E-03
91GO:0006406: mRNA export from nucleus6.16E-03
92GO:0006487: protein N-linked glycosylation6.16E-03
93GO:0030150: protein import into mitochondrial matrix6.16E-03
94GO:0007029: endoplasmic reticulum organization7.24E-03
95GO:1902183: regulation of shoot apical meristem development7.24E-03
96GO:0044209: AMP salvage7.24E-03
97GO:0031167: rRNA methylation7.24E-03
98GO:0051568: histone H3-K4 methylation9.00E-03
99GO:0006555: methionine metabolic process9.00E-03
100GO:0045040: protein import into mitochondrial outer membrane9.00E-03
101GO:0008283: cell proliferation1.06E-02
102GO:0006120: mitochondrial electron transport, NADH to ubiquinone1.09E-02
103GO:0000245: spliceosomal complex assembly1.09E-02
104GO:0009554: megasporogenesis1.09E-02
105GO:0019509: L-methionine salvage from methylthioadenosine1.09E-02
106GO:1901001: negative regulation of response to salt stress1.09E-02
107GO:0000911: cytokinesis by cell plate formation1.09E-02
108GO:0009612: response to mechanical stimulus1.09E-02
109GO:0006458: 'de novo' protein folding1.09E-02
110GO:0042026: protein refolding1.09E-02
111GO:0015991: ATP hydrolysis coupled proton transport1.15E-02
112GO:0009965: leaf morphogenesis1.23E-02
113GO:0006662: glycerol ether metabolic process1.24E-02
114GO:0006413: translational initiation1.25E-02
115GO:0032880: regulation of protein localization1.29E-02
116GO:0048528: post-embryonic root development1.29E-02
117GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c1.29E-02
118GO:0000338: protein deneddylation1.29E-02
119GO:0006506: GPI anchor biosynthetic process1.51E-02
120GO:0050821: protein stabilization1.51E-02
121GO:0031540: regulation of anthocyanin biosynthetic process1.51E-02
122GO:0009690: cytokinin metabolic process1.51E-02
123GO:0080156: mitochondrial mRNA modification1.54E-02
124GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.65E-02
125GO:0010204: defense response signaling pathway, resistance gene-independent1.74E-02
126GO:0009808: lignin metabolic process1.74E-02
127GO:0010093: specification of floral organ identity1.74E-02
128GO:0022900: electron transport chain1.74E-02
129GO:0010100: negative regulation of photomorphogenesis1.74E-02
130GO:0030163: protein catabolic process1.75E-02
131GO:0006914: autophagy1.87E-02
132GO:0006189: 'de novo' IMP biosynthetic process1.98E-02
133GO:0048589: developmental growth1.98E-02
134GO:0015780: nucleotide-sugar transport1.98E-02
135GO:0098656: anion transmembrane transport1.98E-02
136GO:0046685: response to arsenic-containing substance1.98E-02
137GO:0010267: production of ta-siRNAs involved in RNA interference2.23E-02
138GO:0030042: actin filament depolymerization2.23E-02
139GO:0010449: root meristem growth2.23E-02
140GO:0043069: negative regulation of programmed cell death2.49E-02
141GO:0016441: posttranscriptional gene silencing2.49E-02
142GO:0006325: chromatin organization2.49E-02
143GO:0000103: sulfate assimilation2.49E-02
144GO:0009793: embryo development ending in seed dormancy2.50E-02
145GO:0015770: sucrose transport2.76E-02
146GO:0048229: gametophyte development2.76E-02
147GO:0010015: root morphogenesis2.76E-02
148GO:0006790: sulfur compound metabolic process3.04E-02
149GO:0006499: N-terminal protein myristoylation3.22E-02
150GO:2000028: regulation of photoperiodism, flowering3.33E-02
151GO:0010628: positive regulation of gene expression3.33E-02
152GO:0010102: lateral root morphogenesis3.33E-02
153GO:0010043: response to zinc ion3.38E-02
154GO:0006446: regulation of translational initiation3.63E-02
155GO:0048467: gynoecium development3.63E-02
156GO:0007034: vacuolar transport3.63E-02
157GO:0034599: cellular response to oxidative stress3.87E-02
158GO:0010039: response to iron ion3.93E-02
159GO:0006289: nucleotide-excision repair4.57E-02
160GO:0009116: nucleoside metabolic process4.57E-02
161GO:0045454: cell redox homeostasis4.75E-02
162GO:0009926: auxin polar transport4.76E-02
163GO:0051302: regulation of cell division4.90E-02
RankGO TermAdjusted P value
1GO:0005212: structural constituent of eye lens0.00E+00
2GO:0008752: FMN reductase activity0.00E+00
3GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
4GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
5GO:0052873: FMN reductase (NADPH) activity0.00E+00
6GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
7GO:0003735: structural constituent of ribosome3.56E-145
8GO:0003729: mRNA binding6.94E-27
9GO:0004298: threonine-type endopeptidase activity8.47E-20
10GO:0008233: peptidase activity1.25E-11
11GO:0019843: rRNA binding4.57E-11
12GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.01E-04
13GO:0008097: 5S rRNA binding1.75E-04
14GO:0001055: RNA polymerase II activity1.97E-04
15GO:0003746: translation elongation factor activity2.74E-04
16GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances2.94E-04
17GO:0004576: oligosaccharyl transferase activity2.94E-04
18GO:0001054: RNA polymerase I activity3.04E-04
19GO:0001056: RNA polymerase III activity3.67E-04
20GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity4.37E-04
21GO:0031386: protein tag4.37E-04
22GO:0031177: phosphopantetheine binding6.06E-04
23GO:0005080: protein kinase C binding7.97E-04
24GO:1990190: peptide-glutamate-N-acetyltransferase activity7.97E-04
25GO:0019786: Atg8-specific protease activity7.97E-04
26GO:1990259: histone-glutamine methyltransferase activity7.97E-04
27GO:0035614: snRNA stem-loop binding7.97E-04
28GO:1990189: peptide-serine-N-acetyltransferase activity7.97E-04
29GO:0000035: acyl binding8.01E-04
30GO:0008121: ubiquinol-cytochrome-c reductase activity1.02E-03
31GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.04E-03
32GO:0015288: porin activity1.27E-03
33GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.27E-03
34GO:0043022: ribosome binding1.27E-03
35GO:0003723: RNA binding1.29E-03
36GO:0008308: voltage-gated anion channel activity1.55E-03
37GO:0030619: U1 snRNA binding1.72E-03
38GO:0015173: aromatic amino acid transmembrane transporter activity1.72E-03
39GO:0018708: thiol S-methyltransferase activity1.72E-03
40GO:0004826: phenylalanine-tRNA ligase activity1.72E-03
41GO:0019779: Atg8 activating enzyme activity1.72E-03
42GO:0008649: rRNA methyltransferase activity2.86E-03
43GO:0070181: small ribosomal subunit rRNA binding2.86E-03
44GO:0005457: GDP-fucose transmembrane transporter activity2.86E-03
45GO:0008430: selenium binding2.86E-03
46GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity2.86E-03
47GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.86E-03
48GO:0044183: protein binding involved in protein folding2.99E-03
49GO:0004129: cytochrome-c oxidase activity2.99E-03
50GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.51E-03
51GO:0015266: protein channel activity3.91E-03
52GO:0004550: nucleoside diphosphate kinase activity4.16E-03
53GO:0047627: adenylylsulfatase activity4.16E-03
54GO:0017089: glycolipid transporter activity4.16E-03
55GO:0003999: adenine phosphoribosyltransferase activity4.16E-03
56GO:0005460: UDP-glucose transmembrane transporter activity4.16E-03
57GO:0000993: RNA polymerase II core binding5.62E-03
58GO:0016004: phospholipase activator activity5.62E-03
59GO:0010011: auxin binding5.62E-03
60GO:0051861: glycolipid binding5.62E-03
61GO:0046923: ER retention sequence binding5.62E-03
62GO:0070628: proteasome binding5.62E-03
63GO:0019776: Atg8 ligase activity5.62E-03
64GO:0005528: FK506 binding6.16E-03
65GO:0005459: UDP-galactose transmembrane transporter activity7.24E-03
66GO:0005275: amine transmembrane transporter activity7.24E-03
67GO:0031593: polyubiquitin binding9.00E-03
68GO:0047134: protein-disulfide reductase activity1.06E-02
69GO:0051920: peroxiredoxin activity1.09E-02
70GO:0030515: snoRNA binding1.29E-02
71GO:0005338: nucleotide-sugar transmembrane transporter activity1.29E-02
72GO:0042162: telomeric DNA binding1.29E-02
73GO:0004791: thioredoxin-disulfide reductase activity1.34E-02
74GO:0004872: receptor activity1.43E-02
75GO:0016209: antioxidant activity1.51E-02
76GO:0008137: NADH dehydrogenase (ubiquinone) activity1.54E-02
77GO:0008173: RNA methyltransferase activity1.74E-02
78GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.75E-02
79GO:0008237: metallopeptidase activity1.99E-02
80GO:0051082: unfolded protein binding2.44E-02
81GO:0015035: protein disulfide oxidoreductase activity2.53E-02
82GO:0008794: arsenate reductase (glutaredoxin) activity2.76E-02
83GO:0008327: methyl-CpG binding2.76E-02
84GO:0008515: sucrose transmembrane transporter activity2.76E-02
85GO:0046961: proton-transporting ATPase activity, rotational mechanism2.76E-02
86GO:0000049: tRNA binding3.04E-02
87GO:0031072: heat shock protein binding3.33E-02
88GO:0050897: cobalt ion binding3.38E-02
89GO:0003697: single-stranded DNA binding3.70E-02
90GO:0051119: sugar transmembrane transporter activity3.93E-02
91GO:0003712: transcription cofactor activity3.93E-02
92GO:0051536: iron-sulfur cluster binding4.57E-02
93GO:0043130: ubiquitin binding4.57E-02
94GO:0043424: protein histidine kinase binding4.90E-02
RankGO TermAdjusted P value
1GO:0016469: proton-transporting two-sector ATPase complex0.00E+00
2GO:0043186: P granule0.00E+00
3GO:0097361: CIA complex0.00E+00
4GO:0005840: ribosome1.46E-107
5GO:0022626: cytosolic ribosome3.54E-103
6GO:0022625: cytosolic large ribosomal subunit2.95E-85
7GO:0022627: cytosolic small ribosomal subunit1.47E-66
8GO:0005829: cytosol2.20E-38
9GO:0005737: cytoplasm3.62E-34
10GO:0005730: nucleolus3.15E-30
11GO:0005839: proteasome core complex8.47E-20
12GO:0005774: vacuolar membrane1.32E-18
13GO:0000502: proteasome complex1.65E-18
14GO:0009506: plasmodesma3.68E-17
15GO:0015934: large ribosomal subunit1.06E-11
16GO:0005773: vacuole3.11E-11
17GO:0019773: proteasome core complex, alpha-subunit complex7.36E-10
18GO:0016020: membrane6.45E-08
19GO:0015935: small ribosomal subunit2.60E-07
20GO:0005732: small nucleolar ribonucleoprotein complex8.73E-07
21GO:0005750: mitochondrial respiratory chain complex III1.60E-06
22GO:0009507: chloroplast8.02E-06
23GO:0005665: DNA-directed RNA polymerase II, core complex2.36E-05
24GO:0019013: viral nucleocapsid3.12E-05
25GO:0005618: cell wall4.46E-05
26GO:0000419: DNA-directed RNA polymerase V complex6.31E-05
27GO:0034719: SMN-Sm protein complex8.54E-05
28GO:0005742: mitochondrial outer membrane translocase complex1.16E-04
29GO:0005736: DNA-directed RNA polymerase I complex1.53E-04
30GO:0005685: U1 snRNP1.53E-04
31GO:0005666: DNA-directed RNA polymerase III complex1.97E-04
32GO:0071011: precatalytic spliceosome1.97E-04
33GO:0016471: vacuolar proton-transporting V-type ATPase complex2.94E-04
34GO:0005682: U5 snRNP2.94E-04
35GO:0071013: catalytic step 2 spliceosome3.04E-04
36GO:0008250: oligosaccharyltransferase complex4.37E-04
37GO:0005687: U4 snRNP4.37E-04
38GO:0097526: spliceosomal tri-snRNP complex4.37E-04
39GO:0005788: endoplasmic reticulum lumen7.54E-04
40GO:0005758: mitochondrial intermembrane space7.86E-04
41GO:0009510: plasmodesmatal desmotubule7.97E-04
42GO:0030686: 90S preribosome7.97E-04
43GO:0032044: DSIF complex7.97E-04
44GO:0019774: proteasome core complex, beta-subunit complex7.97E-04
45GO:0005689: U12-type spliceosomal complex8.01E-04
46GO:0005681: spliceosomal complex1.03E-03
47GO:0000421: autophagosome membrane1.27E-03
48GO:0046930: pore complex1.55E-03
49GO:0005697: telomerase holoenzyme complex1.72E-03
50GO:0071010: prespliceosome1.72E-03
51GO:0031415: NatA complex1.72E-03
52GO:0035145: exon-exon junction complex1.72E-03
53GO:0015030: Cajal body2.21E-03
54GO:0005686: U2 snRNP2.58E-03
55GO:0000418: DNA-directed RNA polymerase IV complex2.58E-03
56GO:0005853: eukaryotic translation elongation factor 1 complex2.86E-03
57GO:0034715: pICln-Sm protein complex2.86E-03
58GO:0008541: proteasome regulatory particle, lid subcomplex2.99E-03
59GO:0005886: plasma membrane3.02E-03
60GO:0005783: endoplasmic reticulum3.16E-03
61GO:0033180: proton-transporting V-type ATPase, V1 domain4.16E-03
62GO:1990726: Lsm1-7-Pat1 complex4.16E-03
63GO:0071782: endoplasmic reticulum tubular network4.16E-03
64GO:0005775: vacuolar lumen4.16E-03
65GO:0005747: mitochondrial respiratory chain complex I4.77E-03
66GO:0005753: mitochondrial proton-transporting ATP synthase complex4.96E-03
67GO:0005776: autophagosome5.62E-03
68GO:0016593: Cdc73/Paf1 complex5.62E-03
69GO:0000445: THO complex part of transcription export complex5.62E-03
70GO:0070469: respiratory chain6.81E-03
71GO:0005746: mitochondrial respiratory chain7.24E-03
72GO:0005741: mitochondrial outer membrane7.50E-03
73GO:0031410: cytoplasmic vesicle8.22E-03
74GO:0005771: multivesicular body9.00E-03
75GO:0000243: commitment complex9.00E-03
76GO:0030904: retromer complex9.00E-03
77GO:0031428: box C/D snoRNP complex9.00E-03
78GO:0016272: prefoldin complex1.09E-02
79GO:0005622: intracellular1.22E-02
80GO:0000347: THO complex1.29E-02
81GO:0071004: U2-type prespliceosome1.51E-02
82GO:0045273: respiratory chain complex II1.51E-02
83GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)1.51E-02
84GO:0005688: U6 snRNP1.51E-02
85GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane1.51E-02
86GO:0046540: U4/U6 x U5 tri-snRNP complex1.74E-02
87GO:0008180: COP9 signalosome1.98E-02
88GO:0031090: organelle membrane1.98E-02
89GO:0016604: nuclear body2.23E-02
90GO:0005740: mitochondrial envelope2.49E-02
91GO:0005852: eukaryotic translation initiation factor 3 complex2.76E-02
92GO:0032040: small-subunit processome3.04E-02
93GO:0031307: integral component of mitochondrial outer membrane3.04E-02
94GO:0009508: plastid chromosome3.33E-02
95GO:0005739: mitochondrion3.90E-02
96GO:0005769: early endosome4.25E-02
97GO:0005759: mitochondrial matrix4.28E-02
98GO:0045271: respiratory chain complex I4.90E-02
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Gene type



Gene DE type