co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G59670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0072321: chaperone-mediated protein transport	0.00E+00
2	GO:0044843: cell cycle G1/S phase transition	0.00E+00
3	GO:0071731: response to nitric oxide	0.00E+00
4	GO:0090069: regulation of ribosome biogenesis	0.00E+00
5	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
6	GO:1990481: mRNA pseudouridine synthesis	0.00E+00
7	GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	0.00E+00
8	GO:0051050: positive regulation of transport	0.00E+00
9	GO:0080180: 2-methylguanosine metabolic process	0.00E+00
10	GO:0000495: box H/ACA snoRNA 3'-end processing	0.00E+00
11	GO:0006364: rRNA processing	6.00E-20
12	GO:0006412: translation	1.03E-11
13	GO:0009553: embryo sac development	3.17E-09
14	GO:0042254: ribosome biogenesis	3.14E-06
15	GO:0045039: protein import into mitochondrial inner membrane	8.31E-06
16	GO:0010162: seed dormancy process	1.33E-05
17	GO:0042273: ribosomal large subunit biogenesis	3.46E-05
18	GO:0000027: ribosomal large subunit assembly	5.63E-05
19	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.13E-04
20	GO:0010501: RNA secondary structure unwinding	1.43E-04
21	GO:0031118: rRNA pseudouridine synthesis	2.20E-04
22	GO:0035266: meristem growth	2.20E-04
23	GO:0030490: maturation of SSU-rRNA	2.20E-04
24	GO:0006177: GMP biosynthetic process	2.20E-04
25	GO:0000494: box C/D snoRNA 3'-end processing	2.20E-04
26	GO:0019877: diaminopimelate biosynthetic process	2.20E-04
27	GO:2000232: regulation of rRNA processing	2.20E-04
28	GO:0043985: histone H4-R3 methylation	2.20E-04
29	GO:1990258: histone glutamine methylation	2.20E-04
30	GO:0006169: adenosine salvage	2.20E-04
31	GO:0031120: snRNA pseudouridine synthesis	2.20E-04
32	GO:0000469: cleavage involved in rRNA processing	2.20E-04
33	GO:0080009: mRNA methylation	4.90E-04
34	GO:2000072: regulation of defense response to fungus, incompatible interaction	4.90E-04
35	GO:0045041: protein import into mitochondrial intermembrane space	4.90E-04
36	GO:0034470: ncRNA processing	4.90E-04
37	GO:0048569: post-embryonic animal organ development	4.90E-04
38	GO:0009967: positive regulation of signal transduction	4.90E-04
39	GO:0006626: protein targeting to mitochondrion	6.01E-04
40	GO:0009451: RNA modification	7.68E-04
41	GO:0045604: regulation of epidermal cell differentiation	7.98E-04
42	GO:0006556: S-adenosylmethionine biosynthetic process	7.98E-04
43	GO:0009944: polarity specification of adaxial/abaxial axis	9.27E-04
44	GO:0051302: regulation of cell division	1.02E-03
45	GO:0007276: gamete generation	1.14E-03
46	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	1.14E-03
47	GO:0009855: determination of bilateral symmetry	1.14E-03
48	GO:0051131: chaperone-mediated protein complex assembly	1.14E-03
49	GO:0007005: mitochondrion organization	1.22E-03
50	GO:0009294: DNA mediated transformation	1.33E-03
51	GO:0009561: megagametogenesis	1.44E-03
52	GO:0006479: protein methylation	1.51E-03
53	GO:1900864: mitochondrial RNA modification	1.51E-03
54	GO:0051781: positive regulation of cell division	1.51E-03
55	GO:0046345: abscisic acid catabolic process	1.51E-03
56	GO:0051205: protein insertion into membrane	1.51E-03
57	GO:0000460: maturation of 5.8S rRNA	1.51E-03
58	GO:0008033: tRNA processing	1.68E-03
59	GO:0010197: polar nucleus fusion	1.81E-03
60	GO:0006461: protein complex assembly	1.93E-03
61	GO:0044209: AMP salvage	1.93E-03
62	GO:0010375: stomatal complex patterning	1.93E-03
63	GO:0031167: rRNA methylation	1.93E-03
64	GO:0016569: covalent chromatin modification	1.94E-03
65	GO:0000470: maturation of LSU-rRNA	2.38E-03
66	GO:0016554: cytidine to uridine editing	2.38E-03
67	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.38E-03
68	GO:0000741: karyogamy	2.38E-03
69	GO:0048444: floral organ morphogenesis	2.86E-03
70	GO:0010077: maintenance of inflorescence meristem identity	2.86E-03
71	GO:0042026: protein refolding	2.86E-03
72	GO:0006458: 'de novo' protein folding	2.86E-03
73	GO:0010374: stomatal complex development	3.36E-03
74	GO:0045995: regulation of embryonic development	3.36E-03
75	GO:0080186: developmental vegetative growth	3.36E-03
76	GO:0006400: tRNA modification	3.36E-03
77	GO:0006413: translational initiation	3.82E-03
78	GO:0000028: ribosomal small subunit assembly	3.90E-03
79	GO:0042255: ribosome assembly	3.90E-03
80	GO:0001510: RNA methylation	4.47E-03
81	GO:0001558: regulation of cell growth	4.47E-03
82	GO:0007338: single fertilization	5.06E-03
83	GO:0048507: meristem development	5.06E-03
84	GO:2000024: regulation of leaf development	5.06E-03
85	GO:0046686: response to cadmium ion	5.08E-03
86	GO:1900865: chloroplast RNA modification	5.68E-03
87	GO:0010449: root meristem growth	5.68E-03
88	GO:0030422: production of siRNA involved in RNA interference	6.32E-03
89	GO:0006259: DNA metabolic process	6.32E-03
90	GO:0009089: lysine biosynthetic process via diaminopimelate	6.98E-03
91	GO:0006352: DNA-templated transcription, initiation	6.98E-03
92	GO:0009735: response to cytokinin	7.48E-03
93	GO:0010582: floral meristem determinacy	7.68E-03
94	GO:2000012: regulation of auxin polar transport	8.39E-03
95	GO:0010030: positive regulation of seed germination	9.90E-03
96	GO:0030150: protein import into mitochondrial matrix	1.15E-02
97	GO:0010073: meristem maintenance	1.23E-02
98	GO:0045892: negative regulation of transcription, DNA-templated	1.23E-02
99	GO:0006457: protein folding	1.27E-02
100	GO:0061077: chaperone-mediated protein folding	1.32E-02
101	GO:0006396: RNA processing	1.35E-02
102	GO:0006730: one-carbon metabolic process	1.40E-02
103	GO:0009693: ethylene biosynthetic process	1.49E-02
104	GO:0071215: cellular response to abscisic acid stimulus	1.49E-02
105	GO:0000413: protein peptidyl-prolyl isomerization	1.77E-02
106	GO:0009960: endosperm development	1.87E-02
107	GO:0010305: leaf vascular tissue pattern formation	1.87E-02
108	GO:0009790: embryo development	1.93E-02
109	GO:0009791: post-embryonic development	2.07E-02
110	GO:0048825: cotyledon development	2.07E-02
111	GO:0080156: mitochondrial mRNA modification	2.17E-02
112	GO:0016032: viral process	2.28E-02
113	GO:0071281: cellular response to iron ion	2.38E-02
114	GO:0009567: double fertilization forming a zygote and endosperm	2.49E-02
115	GO:0009555: pollen development	3.23E-02
116	GO:0016049: cell growth	3.29E-02
117	GO:0010311: lateral root formation	3.53E-02
118	GO:0048527: lateral root development	3.78E-02
119	GO:0009640: photomorphogenesis	4.83E-02

Rank	GO Term	Adjusted P value
1	GO:0050355: triphosphatase activity	0.00E+00
2	GO:0016018: cyclosporin A binding	0.00E+00
3	GO:0003723: RNA binding	8.19E-21
4	GO:0003735: structural constituent of ribosome	1.28E-15
5	GO:0000166: nucleotide binding	9.79E-15
6	GO:0030515: snoRNA binding	1.66E-08
7	GO:0004407: histone deacetylase activity	1.49E-06
8	GO:0043021: ribonucleoprotein complex binding	2.28E-06
9	GO:0008026: ATP-dependent helicase activity	2.45E-06
10	GO:0019843: rRNA binding	4.02E-06
11	GO:0003729: mRNA binding	1.95E-05
12	GO:0004004: ATP-dependent RNA helicase activity	3.36E-05
13	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.76E-04
14	GO:1990259: histone-glutamine methyltransferase activity	2.20E-04
15	GO:0042134: rRNA primary transcript binding	2.20E-04
16	GO:0008840: 4-hydroxy-tetrahydrodipicolinate synthase	2.20E-04
17	GO:0030371: translation repressor activity	2.20E-04
18	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	2.20E-04
19	GO:0004001: adenosine kinase activity	2.20E-04
20	GO:0001055: RNA polymerase II activity	3.41E-04
21	GO:0001054: RNA polymerase I activity	4.63E-04
22	GO:0044183: protein binding involved in protein folding	4.63E-04
23	GO:0003938: IMP dehydrogenase activity	4.90E-04
24	GO:0005078: MAP-kinase scaffold activity	4.90E-04
25	GO:0043141: ATP-dependent 5'-3' DNA helicase activity	4.90E-04
26	GO:0001056: RNA polymerase III activity	5.30E-04
27	GO:0004478: methionine adenosyltransferase activity	7.98E-04
28	GO:0015462: ATPase-coupled protein transmembrane transporter activity	7.98E-04
29	GO:0070181: small ribosomal subunit rRNA binding	7.98E-04
30	GO:0008649: rRNA methyltransferase activity	7.98E-04
31	GO:0008235: metalloexopeptidase activity	3.36E-03
32	GO:0004519: endonuclease activity	4.07E-03
33	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.19E-03
34	GO:0008173: RNA methyltransferase activity	4.47E-03
35	GO:0050897: cobalt ion binding	4.84E-03
36	GO:0003678: DNA helicase activity	5.06E-03
37	GO:0003743: translation initiation factor activity	5.09E-03
38	GO:0003746: translation elongation factor activity	5.30E-03
39	GO:0008168: methyltransferase activity	6.94E-03
40	GO:0004521: endoribonuclease activity	7.68E-03
41	GO:0000049: tRNA binding	7.68E-03
42	GO:0009982: pseudouridine synthase activity	8.39E-03
43	GO:0051087: chaperone binding	1.23E-02
44	GO:0003676: nucleic acid binding	1.27E-02
45	GO:0051082: unfolded protein binding	1.32E-02
46	GO:0003924: GTPase activity	1.57E-02
47	GO:0004527: exonuclease activity	1.87E-02
48	GO:0003713: transcription coactivator activity	1.87E-02
49	GO:0010181: FMN binding	1.97E-02
50	GO:0005524: ATP binding	2.03E-02
51	GO:0008483: transaminase activity	2.60E-02
52	GO:0016787: hydrolase activity	2.73E-02
53	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.29E-02
54	GO:0005515: protein binding	3.32E-02
55	GO:0000987: core promoter proximal region sequence-specific DNA binding	4.16E-02
56	GO:0051539: 4 iron, 4 sulfur cluster binding	4.43E-02
57	GO:0005507: copper ion binding	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0034455: t-UTP complex	0.00E+00
2	GO:0036396: MIS complex	0.00E+00
3	GO:0070545: PeBoW complex	0.00E+00
4	GO:0042719: mitochondrial intermembrane space protein transporter complex	0.00E+00
5	GO:0034457: Mpp10 complex	0.00E+00
6	GO:0005730: nucleolus	1.12E-48
7	GO:0032040: small-subunit processome	3.39E-11
8	GO:0005840: ribosome	3.89E-11
9	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	8.25E-10
10	GO:0022626: cytosolic ribosome	9.85E-09
11	GO:0022625: cytosolic large ribosomal subunit	3.48E-08
12	GO:0005829: cytosol	1.55E-07
13	GO:0005834: heterotrimeric G-protein complex	1.41E-06
14	GO:0022627: cytosolic small ribosomal subunit	1.74E-06
15	GO:0030687: preribosome, large subunit precursor	2.39E-06
16	GO:0005634: nucleus	7.60E-06
17	GO:0031428: box C/D snoRNP complex	8.18E-05
18	GO:0005759: mitochondrial matrix	8.94E-05
19	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	2.20E-04
20	GO:0030688: preribosome, small subunit precursor	2.20E-04
21	GO:0005736: DNA-directed RNA polymerase I complex	2.86E-04
22	GO:0005666: DNA-directed RNA polymerase III complex	3.41E-04
23	GO:0015030: Cajal body	3.41E-04
24	GO:0000418: DNA-directed RNA polymerase IV complex	4.00E-04
25	GO:0005852: eukaryotic translation initiation factor 3 complex	4.63E-04
26	GO:0009506: plasmodesma	4.75E-04
27	GO:0005665: DNA-directed RNA polymerase II, core complex	5.30E-04
28	GO:0005618: cell wall	5.39E-04
29	GO:0015934: large ribosomal subunit	6.00E-04
30	GO:0000419: DNA-directed RNA polymerase V complex	8.40E-04
31	GO:0015935: small ribosomal subunit	1.12E-03
32	GO:0031429: box H/ACA snoRNP complex	1.14E-03
33	GO:0005747: mitochondrial respiratory chain complex I	1.72E-03
34	GO:0005654: nucleoplasm	2.69E-03
35	GO:0031597: cytosolic proteasome complex	2.86E-03
36	GO:0016363: nuclear matrix	2.86E-03
37	GO:0005743: mitochondrial inner membrane	3.21E-03
38	GO:0030529: intracellular ribonucleoprotein complex	3.21E-03
39	GO:0005773: vacuole	3.28E-03
40	GO:0005737: cytoplasm	3.41E-03
41	GO:0034399: nuclear periphery	3.90E-03
42	GO:0005763: mitochondrial small ribosomal subunit	5.06E-03
43	GO:0008180: COP9 signalosome	5.06E-03
44	GO:0005622: intracellular	5.90E-03
45	GO:0005739: mitochondrion	6.00E-03
46	GO:0019013: viral nucleocapsid	8.39E-03
47	GO:0005774: vacuolar membrane	8.82E-03
48	GO:0005758: mitochondrial intermembrane space	1.15E-02
49	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.58E-02
50	GO:0019898: extrinsic component of membrane	2.07E-02
51	GO:0016592: mediator complex	2.28E-02
52	GO:0090406: pollen tube	4.83E-02