GO Enrichment Analysis of Co-expressed Genes with
AT3G59540
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1904874: positive regulation of telomerase RNA localization to Cajal body | 0.00E+00 |
| 2 | GO:0007530: sex determination | 0.00E+00 |
| 3 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 4 | GO:1990569: UDP-N-acetylglucosamine transmembrane transport | 0.00E+00 |
| 5 | GO:0015789: UDP-N-acetylgalactosamine transport | 0.00E+00 |
| 6 | GO:0090239: regulation of histone H4 acetylation | 0.00E+00 |
| 7 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 8 | GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process | 0.00E+00 |
| 9 | GO:1903857: negative regulation of cytokinin dehydrogenase activity | 0.00E+00 |
| 10 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 11 | GO:0034050: host programmed cell death induced by symbiont | 0.00E+00 |
| 12 | GO:0046487: glyoxylate metabolic process | 0.00E+00 |
| 13 | GO:0006412: translation | 3.73E-175 |
| 14 | GO:0042254: ribosome biogenesis | 2.92E-63 |
| 15 | GO:0000027: ribosomal large subunit assembly | 6.41E-14 |
| 16 | GO:0006626: protein targeting to mitochondrion | 4.97E-11 |
| 17 | GO:0000028: ribosomal small subunit assembly | 5.83E-07 |
| 18 | GO:0000387: spliceosomal snRNP assembly | 2.34E-06 |
| 19 | GO:0009967: positive regulation of signal transduction | 1.24E-05 |
| 20 | GO:0000398: mRNA splicing, via spliceosome | 1.31E-05 |
| 21 | GO:0009955: adaxial/abaxial pattern specification | 1.40E-05 |
| 22 | GO:0006364: rRNA processing | 3.04E-05 |
| 23 | GO:1902626: assembly of large subunit precursor of preribosome | 4.17E-05 |
| 24 | GO:0002181: cytoplasmic translation | 4.17E-05 |
| 25 | GO:0009735: response to cytokinin | 1.52E-04 |
| 26 | GO:0042274: ribosomal small subunit biogenesis | 1.53E-04 |
| 27 | GO:0031167: rRNA methylation | 2.34E-04 |
| 28 | GO:0045040: protein import into mitochondrial outer membrane | 3.30E-04 |
| 29 | GO:0030150: protein import into mitochondrial matrix | 3.58E-04 |
| 30 | GO:0006458: 'de novo' protein folding | 4.39E-04 |
| 31 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 5.32E-04 |
| 32 | GO:0032365: intracellular lipid transport | 5.32E-04 |
| 33 | GO:0006407: rRNA export from nucleus | 5.32E-04 |
| 34 | GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process | 5.32E-04 |
| 35 | GO:0031120: snRNA pseudouridine synthesis | 5.32E-04 |
| 36 | GO:0031118: rRNA pseudouridine synthesis | 5.32E-04 |
| 37 | GO:0015801: aromatic amino acid transport | 5.32E-04 |
| 38 | GO:0030490: maturation of SSU-rRNA | 5.32E-04 |
| 39 | GO:0006434: seryl-tRNA aminoacylation | 5.32E-04 |
| 40 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 5.32E-04 |
| 41 | GO:0006414: translational elongation | 6.13E-04 |
| 42 | GO:0001510: RNA methylation | 8.55E-04 |
| 43 | GO:0015786: UDP-glucose transport | 1.14E-03 |
| 44 | GO:0045905: positive regulation of translational termination | 1.14E-03 |
| 45 | GO:0045901: positive regulation of translational elongation | 1.14E-03 |
| 46 | GO:0045041: protein import into mitochondrial intermembrane space | 1.14E-03 |
| 47 | GO:0048569: post-embryonic animal organ development | 1.14E-03 |
| 48 | GO:0043981: histone H4-K5 acetylation | 1.14E-03 |
| 49 | GO:0006452: translational frameshifting | 1.14E-03 |
| 50 | GO:0006820: anion transport | 1.86E-03 |
| 51 | GO:0009150: purine ribonucleotide metabolic process | 1.88E-03 |
| 52 | GO:0015783: GDP-fucose transport | 1.88E-03 |
| 53 | GO:0010476: gibberellin mediated signaling pathway | 1.88E-03 |
| 54 | GO:0042256: mature ribosome assembly | 1.88E-03 |
| 55 | GO:0048467: gynoecium development | 2.39E-03 |
| 56 | GO:0006165: nucleoside diphosphate phosphorylation | 2.72E-03 |
| 57 | GO:0006228: UTP biosynthetic process | 2.72E-03 |
| 58 | GO:0006164: purine nucleotide biosynthetic process | 2.72E-03 |
| 59 | GO:0007004: telomere maintenance via telomerase | 2.72E-03 |
| 60 | GO:0070301: cellular response to hydrogen peroxide | 2.72E-03 |
| 61 | GO:0006241: CTP biosynthetic process | 2.72E-03 |
| 62 | GO:0072334: UDP-galactose transmembrane transport | 2.72E-03 |
| 63 | GO:0006183: GTP biosynthetic process | 3.66E-03 |
| 64 | GO:0061077: chaperone-mediated protein folding | 4.03E-03 |
| 65 | GO:0046686: response to cadmium ion | 4.25E-03 |
| 66 | GO:0007005: mitochondrion organization | 4.41E-03 |
| 67 | GO:0019408: dolichol biosynthetic process | 4.70E-03 |
| 68 | GO:1902183: regulation of shoot apical meristem development | 4.70E-03 |
| 69 | GO:0008283: cell proliferation | 4.80E-03 |
| 70 | GO:0009793: embryo development ending in seed dormancy | 4.80E-03 |
| 71 | GO:0071215: cellular response to abscisic acid stimulus | 4.81E-03 |
| 72 | GO:0040007: growth | 4.81E-03 |
| 73 | GO:0006413: translational initiation | 4.85E-03 |
| 74 | GO:0009965: leaf morphogenesis | 5.58E-03 |
| 75 | GO:0009651: response to salt stress | 5.74E-03 |
| 76 | GO:0016070: RNA metabolic process | 5.82E-03 |
| 77 | GO:0000470: maturation of LSU-rRNA | 5.82E-03 |
| 78 | GO:0008033: tRNA processing | 6.14E-03 |
| 79 | GO:0000911: cytokinesis by cell plate formation | 7.03E-03 |
| 80 | GO:0042026: protein refolding | 7.03E-03 |
| 81 | GO:0000245: spliceosomal complex assembly | 7.03E-03 |
| 82 | GO:0016444: somatic cell DNA recombination | 7.03E-03 |
| 83 | GO:1901001: negative regulation of response to salt stress | 7.03E-03 |
| 84 | GO:0006635: fatty acid beta-oxidation | 8.20E-03 |
| 85 | GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c | 8.33E-03 |
| 86 | GO:0009645: response to low light intensity stimulus | 8.33E-03 |
| 87 | GO:0001522: pseudouridine synthesis | 9.70E-03 |
| 88 | GO:0001558: regulation of cell growth | 1.11E-02 |
| 89 | GO:0030968: endoplasmic reticulum unfolded protein response | 1.11E-02 |
| 90 | GO:0006189: 'de novo' IMP biosynthetic process | 1.27E-02 |
| 91 | GO:0015780: nucleotide-sugar transport | 1.27E-02 |
| 92 | GO:0098656: anion transmembrane transport | 1.27E-02 |
| 93 | GO:0009245: lipid A biosynthetic process | 1.27E-02 |
| 94 | GO:0010162: seed dormancy process | 1.59E-02 |
| 95 | GO:0009845: seed germination | 1.63E-02 |
| 96 | GO:0015031: protein transport | 1.74E-02 |
| 97 | GO:0006913: nucleocytoplasmic transport | 1.76E-02 |
| 98 | GO:0015770: sucrose transport | 1.76E-02 |
| 99 | GO:0010015: root morphogenesis | 1.76E-02 |
| 100 | GO:0071365: cellular response to auxin stimulus | 1.94E-02 |
| 101 | GO:0006790: sulfur compound metabolic process | 1.94E-02 |
| 102 | GO:0012501: programmed cell death | 1.94E-02 |
| 103 | GO:0009409: response to cold | 1.98E-02 |
| 104 | GO:0010102: lateral root morphogenesis | 2.13E-02 |
| 105 | GO:0010628: positive regulation of gene expression | 2.13E-02 |
| 106 | GO:2000028: regulation of photoperiodism, flowering | 2.13E-02 |
| 107 | GO:0006446: regulation of translational initiation | 2.32E-02 |
| 108 | GO:0008380: RNA splicing | 2.77E-02 |
| 109 | GO:0009644: response to high light intensity | 2.77E-02 |
| 110 | GO:0009944: polarity specification of adaxial/abaxial axis | 2.93E-02 |
| 111 | GO:0006289: nucleotide-excision repair | 2.93E-02 |
| 112 | GO:0006487: protein N-linked glycosylation | 2.93E-02 |
| 113 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 3.10E-02 |
| 114 | GO:0051302: regulation of cell division | 3.14E-02 |
| 115 | GO:0003333: amino acid transmembrane transport | 3.36E-02 |
| 116 | GO:0051260: protein homooligomerization | 3.36E-02 |
| 117 | GO:0010431: seed maturation | 3.36E-02 |
| 118 | GO:0006334: nucleosome assembly | 3.36E-02 |
| 119 | GO:0009294: DNA mediated transformation | 3.81E-02 |
| 120 | GO:0010584: pollen exine formation | 4.05E-02 |
| 121 | GO:0000413: protein peptidyl-prolyl isomerization | 4.53E-02 |
| 122 | GO:0010197: polar nucleus fusion | 4.77E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034513: box H/ACA snoRNA binding | 0.00E+00 |
| 2 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 3 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 4 | GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity | 0.00E+00 |
| 5 | GO:0003735: structural constituent of ribosome | 8.26E-215 |
| 6 | GO:0003729: mRNA binding | 2.54E-38 |
| 7 | GO:0019843: rRNA binding | 5.46E-17 |
| 8 | GO:0003723: RNA binding | 9.92E-10 |
| 9 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 3.08E-06 |
| 10 | GO:0003746: translation elongation factor activity | 6.31E-06 |
| 11 | GO:0005078: MAP-kinase scaffold activity | 1.24E-05 |
| 12 | GO:0030515: snoRNA binding | 2.20E-05 |
| 13 | GO:0015288: porin activity | 3.24E-05 |
| 14 | GO:0008649: rRNA methyltransferase activity | 4.17E-05 |
| 15 | GO:0008097: 5S rRNA binding | 8.87E-05 |
| 16 | GO:0044183: protein binding involved in protein folding | 1.29E-04 |
| 17 | GO:0004828: serine-tRNA ligase activity | 5.32E-04 |
| 18 | GO:0005080: protein kinase C binding | 5.32E-04 |
| 19 | GO:0035614: snRNA stem-loop binding | 5.32E-04 |
| 20 | GO:0043022: ribosome binding | 7.02E-04 |
| 21 | GO:0008308: voltage-gated anion channel activity | 8.55E-04 |
| 22 | GO:0032934: sterol binding | 1.14E-03 |
| 23 | GO:0030619: U1 snRNA binding | 1.14E-03 |
| 24 | GO:0015173: aromatic amino acid transmembrane transporter activity | 1.14E-03 |
| 25 | GO:0070034: telomerase RNA binding | 1.14E-03 |
| 26 | GO:0001055: RNA polymerase II activity | 1.20E-03 |
| 27 | GO:0001054: RNA polymerase I activity | 1.62E-03 |
| 28 | GO:0001056: RNA polymerase III activity | 1.86E-03 |
| 29 | GO:0032947: protein complex scaffold | 1.88E-03 |
| 30 | GO:0070181: small ribosomal subunit rRNA binding | 1.88E-03 |
| 31 | GO:0005457: GDP-fucose transmembrane transporter activity | 1.88E-03 |
| 32 | GO:0070180: large ribosomal subunit rRNA binding | 1.88E-03 |
| 33 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 1.88E-03 |
| 34 | GO:0015266: protein channel activity | 2.11E-03 |
| 35 | GO:0005460: UDP-glucose transmembrane transporter activity | 2.72E-03 |
| 36 | GO:0004550: nucleoside diphosphate kinase activity | 2.72E-03 |
| 37 | GO:0047627: adenylylsulfatase activity | 2.72E-03 |
| 38 | GO:0070628: proteasome binding | 3.66E-03 |
| 39 | GO:0045547: dehydrodolichyl diphosphate synthase activity | 4.70E-03 |
| 40 | GO:0005275: amine transmembrane transporter activity | 4.70E-03 |
| 41 | GO:0005459: UDP-galactose transmembrane transporter activity | 4.70E-03 |
| 42 | GO:0031593: polyubiquitin binding | 5.82E-03 |
| 43 | GO:0031177: phosphopantetheine binding | 5.82E-03 |
| 44 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 5.82E-03 |
| 45 | GO:0000035: acyl binding | 7.03E-03 |
| 46 | GO:0051920: peroxiredoxin activity | 7.03E-03 |
| 47 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 7.04E-03 |
| 48 | GO:0005338: nucleotide-sugar transmembrane transporter activity | 8.33E-03 |
| 49 | GO:0008235: metalloexopeptidase activity | 8.33E-03 |
| 50 | GO:0008121: ubiquinol-cytochrome-c reductase activity | 8.33E-03 |
| 51 | GO:0016209: antioxidant activity | 9.70E-03 |
| 52 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 9.70E-03 |
| 53 | GO:0051082: unfolded protein binding | 1.11E-02 |
| 54 | GO:0008515: sucrose transmembrane transporter activity | 1.76E-02 |
| 55 | GO:0051119: sugar transmembrane transporter activity | 2.52E-02 |
| 56 | GO:0003743: translation initiation factor activity | 2.70E-02 |
| 57 | GO:0004407: histone deacetylase activity | 2.93E-02 |
| 58 | GO:0043130: ubiquitin binding | 2.93E-02 |
| 59 | GO:0005216: ion channel activity | 3.14E-02 |
| 60 | GO:0051087: chaperone binding | 3.14E-02 |
| 61 | GO:0004298: threonine-type endopeptidase activity | 3.36E-02 |
| 62 | GO:0008514: organic anion transmembrane transporter activity | 4.05E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0072589: box H/ACA scaRNP complex | 0.00E+00 |
| 2 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 3 | GO:0043186: P granule | 0.00E+00 |
| 4 | GO:0090661: box H/ACA telomerase RNP complex | 0.00E+00 |
| 5 | GO:0005840: ribosome | 8.92E-143 |
| 6 | GO:0022626: cytosolic ribosome | 2.06E-129 |
| 7 | GO:0022625: cytosolic large ribosomal subunit | 1.60E-127 |
| 8 | GO:0022627: cytosolic small ribosomal subunit | 1.15E-92 |
| 9 | GO:0005730: nucleolus | 1.71E-50 |
| 10 | GO:0005829: cytosol | 7.32E-43 |
| 11 | GO:0005737: cytoplasm | 3.25E-39 |
| 12 | GO:0009506: plasmodesma | 2.54E-26 |
| 13 | GO:0015934: large ribosomal subunit | 1.27E-21 |
| 14 | GO:0016020: membrane | 4.87E-17 |
| 15 | GO:0005774: vacuolar membrane | 1.79E-15 |
| 16 | GO:0015935: small ribosomal subunit | 1.90E-13 |
| 17 | GO:0005773: vacuole | 2.47E-09 |
| 18 | GO:0005618: cell wall | 2.38E-08 |
| 19 | GO:0005732: small nucleolar ribonucleoprotein complex | 6.15E-08 |
| 20 | GO:0005742: mitochondrial outer membrane translocase complex | 9.75E-07 |
| 21 | GO:0009507: chloroplast | 1.20E-06 |
| 22 | GO:0015030: Cajal body | 2.34E-06 |
| 23 | GO:0005681: spliceosomal complex | 4.45E-06 |
| 24 | GO:0019013: viral nucleocapsid | 8.84E-06 |
| 25 | GO:0034719: SMN-Sm protein complex | 4.17E-05 |
| 26 | GO:0005853: eukaryotic translation elongation factor 1 complex | 4.17E-05 |
| 27 | GO:0046930: pore complex | 4.56E-05 |
| 28 | GO:0005685: U1 snRNP | 6.16E-05 |
| 29 | GO:0071011: precatalytic spliceosome | 8.09E-05 |
| 30 | GO:0071013: catalytic step 2 spliceosome | 1.29E-04 |
| 31 | GO:0005682: U5 snRNP | 1.53E-04 |
| 32 | GO:0005665: DNA-directed RNA polymerase II, core complex | 1.59E-04 |
| 33 | GO:0005687: U4 snRNP | 2.34E-04 |
| 34 | GO:0097526: spliceosomal tri-snRNP complex | 2.34E-04 |
| 35 | GO:0031428: box C/D snoRNP complex | 3.30E-04 |
| 36 | GO:0005758: mitochondrial intermembrane space | 3.58E-04 |
| 37 | GO:0005886: plasma membrane | 3.71E-04 |
| 38 | GO:0005689: U12-type spliceosomal complex | 4.39E-04 |
| 39 | GO:0005741: mitochondrial outer membrane | 4.63E-04 |
| 40 | GO:0030686: 90S preribosome | 5.32E-04 |
| 41 | GO:0005688: U6 snRNP | 7.02E-04 |
| 42 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 8.55E-04 |
| 43 | GO:0005736: DNA-directed RNA polymerase I complex | 1.02E-03 |
| 44 | GO:0035145: exon-exon junction complex | 1.14E-03 |
| 45 | GO:0071010: prespliceosome | 1.14E-03 |
| 46 | GO:0005666: DNA-directed RNA polymerase III complex | 1.20E-03 |
| 47 | GO:0005686: U2 snRNP | 1.40E-03 |
| 48 | GO:0000418: DNA-directed RNA polymerase IV complex | 1.40E-03 |
| 49 | GO:0032040: small-subunit processome | 1.86E-03 |
| 50 | GO:0034715: pICln-Sm protein complex | 1.88E-03 |
| 51 | GO:0005743: mitochondrial inner membrane | 1.98E-03 |
| 52 | GO:1990726: Lsm1-7-Pat1 complex | 2.72E-03 |
| 53 | GO:0031429: box H/ACA snoRNP complex | 2.72E-03 |
| 54 | GO:0000419: DNA-directed RNA polymerase V complex | 2.99E-03 |
| 55 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 5.24E-03 |
| 56 | GO:0000243: commitment complex | 5.82E-03 |
| 57 | GO:0005762: mitochondrial large ribosomal subunit | 7.03E-03 |
| 58 | GO:0016272: prefoldin complex | 7.03E-03 |
| 59 | GO:0031359: integral component of chloroplast outer membrane | 8.33E-03 |
| 60 | GO:0071004: U2-type prespliceosome | 9.70E-03 |
| 61 | GO:0030529: intracellular ribonucleoprotein complex | 1.19E-02 |
| 62 | GO:0016604: nuclear body | 1.43E-02 |
| 63 | GO:0005740: mitochondrial envelope | 1.59E-02 |
| 64 | GO:0005852: eukaryotic translation initiation factor 3 complex | 1.76E-02 |
| 65 | GO:0048471: perinuclear region of cytoplasm | 1.76E-02 |
| 66 | GO:0031307: integral component of mitochondrial outer membrane | 1.94E-02 |
| 67 | GO:0005622: intracellular | 2.15E-02 |
| 68 | GO:0005750: mitochondrial respiratory chain complex III | 2.32E-02 |
| 69 | GO:0070469: respiratory chain | 3.14E-02 |
| 70 | GO:0005839: proteasome core complex | 3.36E-02 |
| 71 | GO:0000502: proteasome complex | 3.45E-02 |
| 72 | GO:0005834: heterotrimeric G-protein complex | 4.33E-02 |
| 73 | GO:0009706: chloroplast inner membrane | 4.88E-02 |