GO Enrichment Analysis of Co-expressed Genes with
AT3G59490
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046294: formaldehyde catabolic process | 0.00E+00 |
| 2 | GO:0016093: polyprenol metabolic process | 0.00E+00 |
| 3 | GO:0036172: thiamine salvage | 0.00E+00 |
| 4 | GO:0045747: positive regulation of Notch signaling pathway | 0.00E+00 |
| 5 | GO:0032928: regulation of superoxide anion generation | 0.00E+00 |
| 6 | GO:0032780: negative regulation of ATPase activity | 0.00E+00 |
| 7 | GO:1902265: abscisic acid homeostasis | 8.25E-05 |
| 8 | GO:0006567: threonine catabolic process | 8.25E-05 |
| 9 | GO:0010036: response to boron-containing substance | 8.25E-05 |
| 10 | GO:0016122: xanthophyll metabolic process | 1.97E-04 |
| 11 | GO:0010343: singlet oxygen-mediated programmed cell death | 1.97E-04 |
| 12 | GO:0043617: cellular response to sucrose starvation | 3.29E-04 |
| 13 | GO:0009150: purine ribonucleotide metabolic process | 3.29E-04 |
| 14 | GO:0071492: cellular response to UV-A | 3.29E-04 |
| 15 | GO:0031022: nuclear migration along microfilament | 3.29E-04 |
| 16 | GO:0009399: nitrogen fixation | 4.75E-04 |
| 17 | GO:0006516: glycoprotein catabolic process | 4.75E-04 |
| 18 | GO:0046713: borate transport | 4.75E-04 |
| 19 | GO:0006520: cellular amino acid metabolic process | 4.96E-04 |
| 20 | GO:0006221: pyrimidine nucleotide biosynthetic process | 6.32E-04 |
| 21 | GO:0009902: chloroplast relocation | 6.32E-04 |
| 22 | GO:0034613: cellular protein localization | 6.32E-04 |
| 23 | GO:0006542: glutamine biosynthetic process | 6.32E-04 |
| 24 | GO:0070534: protein K63-linked ubiquitination | 6.32E-04 |
| 25 | GO:0006545: glycine biosynthetic process | 6.32E-04 |
| 26 | GO:0071486: cellular response to high light intensity | 6.32E-04 |
| 27 | GO:0009765: photosynthesis, light harvesting | 6.32E-04 |
| 28 | GO:0000304: response to singlet oxygen | 8.00E-04 |
| 29 | GO:0010117: photoprotection | 8.00E-04 |
| 30 | GO:0009229: thiamine diphosphate biosynthetic process | 8.00E-04 |
| 31 | GO:0009228: thiamine biosynthetic process | 9.77E-04 |
| 32 | GO:0006796: phosphate-containing compound metabolic process | 9.77E-04 |
| 33 | GO:0006301: postreplication repair | 9.77E-04 |
| 34 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 9.77E-04 |
| 35 | GO:0006555: methionine metabolic process | 9.77E-04 |
| 36 | GO:0006120: mitochondrial electron transport, NADH to ubiquinone | 1.16E-03 |
| 37 | GO:0010016: shoot system morphogenesis | 1.16E-03 |
| 38 | GO:0009903: chloroplast avoidance movement | 1.16E-03 |
| 39 | GO:0019509: L-methionine salvage from methylthioadenosine | 1.16E-03 |
| 40 | GO:0050790: regulation of catalytic activity | 1.36E-03 |
| 41 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 1.57E-03 |
| 42 | GO:0030091: protein repair | 1.57E-03 |
| 43 | GO:0009704: de-etiolation | 1.57E-03 |
| 44 | GO:0009231: riboflavin biosynthetic process | 1.57E-03 |
| 45 | GO:0051453: regulation of intracellular pH | 2.26E-03 |
| 46 | GO:0009688: abscisic acid biosynthetic process | 2.51E-03 |
| 47 | GO:0006790: sulfur compound metabolic process | 3.03E-03 |
| 48 | GO:0030048: actin filament-based movement | 3.31E-03 |
| 49 | GO:0000162: tryptophan biosynthetic process | 4.18E-03 |
| 50 | GO:0006487: protein N-linked glycosylation | 4.48E-03 |
| 51 | GO:0019915: lipid storage | 5.12E-03 |
| 52 | GO:0016226: iron-sulfur cluster assembly | 5.45E-03 |
| 53 | GO:0009693: ethylene biosynthetic process | 5.78E-03 |
| 54 | GO:0006012: galactose metabolic process | 5.78E-03 |
| 55 | GO:0005975: carbohydrate metabolic process | 5.94E-03 |
| 56 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 6.48E-03 |
| 57 | GO:0007059: chromosome segregation | 7.57E-03 |
| 58 | GO:0009646: response to absence of light | 7.57E-03 |
| 59 | GO:0009851: auxin biosynthetic process | 7.95E-03 |
| 60 | GO:0007264: small GTPase mediated signal transduction | 8.73E-03 |
| 61 | GO:0006464: cellular protein modification process | 9.53E-03 |
| 62 | GO:0016579: protein deubiquitination | 1.04E-02 |
| 63 | GO:0051607: defense response to virus | 1.04E-02 |
| 64 | GO:0010029: regulation of seed germination | 1.12E-02 |
| 65 | GO:0042128: nitrate assimilation | 1.17E-02 |
| 66 | GO:0007568: aging | 1.44E-02 |
| 67 | GO:0009637: response to blue light | 1.54E-02 |
| 68 | GO:0009853: photorespiration | 1.54E-02 |
| 69 | GO:0006629: lipid metabolic process | 1.66E-02 |
| 70 | GO:0009744: response to sucrose | 1.84E-02 |
| 71 | GO:0000209: protein polyubiquitination | 1.89E-02 |
| 72 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 2.11E-02 |
| 73 | GO:0006486: protein glycosylation | 2.28E-02 |
| 74 | GO:0051603: proteolysis involved in cellular protein catabolic process | 2.33E-02 |
| 75 | GO:0006417: regulation of translation | 2.45E-02 |
| 76 | GO:0048367: shoot system development | 2.62E-02 |
| 77 | GO:0035556: intracellular signal transduction | 3.12E-02 |
| 78 | GO:0009058: biosynthetic process | 3.56E-02 |
| 79 | GO:0009737: response to abscisic acid | 3.66E-02 |
| 80 | GO:0006633: fatty acid biosynthetic process | 4.04E-02 |
| 81 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 4.67E-02 |
| 82 | GO:0006470: protein dephosphorylation | 4.75E-02 |
| 83 | GO:0010468: regulation of gene expression | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003826: alpha-ketoacid dehydrogenase activity | 0.00E+00 |
| 2 | GO:0018738: S-formylglutathione hydrolase activity | 0.00E+00 |
| 3 | GO:0004147: dihydrolipoamide branched chain acyltransferase activity | 0.00E+00 |
| 4 | GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity | 0.00E+00 |
| 5 | GO:0042030: ATPase inhibitor activity | 0.00E+00 |
| 6 | GO:0004417: hydroxyethylthiazole kinase activity | 0.00E+00 |
| 7 | GO:0043754: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity | 0.00E+00 |
| 8 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 3.39E-06 |
| 9 | GO:0004793: threonine aldolase activity | 8.25E-05 |
| 10 | GO:0080139: borate efflux transmembrane transporter activity | 8.25E-05 |
| 11 | GO:0016783: sulfurtransferase activity | 8.25E-05 |
| 12 | GO:0008732: L-allo-threonine aldolase activity | 8.25E-05 |
| 13 | GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity | 8.25E-05 |
| 14 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 8.25E-05 |
| 15 | GO:0033984: indole-3-glycerol-phosphate lyase activity | 8.25E-05 |
| 16 | GO:0004560: alpha-L-fucosidase activity | 8.25E-05 |
| 17 | GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity | 8.25E-05 |
| 18 | GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | 1.97E-04 |
| 19 | GO:0004848: ureidoglycolate hydrolase activity | 3.29E-04 |
| 20 | GO:0003935: GTP cyclohydrolase II activity | 3.29E-04 |
| 21 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 3.29E-04 |
| 22 | GO:0004792: thiosulfate sulfurtransferase activity | 4.75E-04 |
| 23 | GO:0046715: borate transmembrane transporter activity | 4.75E-04 |
| 24 | GO:0047627: adenylylsulfatase activity | 4.75E-04 |
| 25 | GO:0004834: tryptophan synthase activity | 6.32E-04 |
| 26 | GO:0005452: inorganic anion exchanger activity | 8.00E-04 |
| 27 | GO:0004356: glutamate-ammonia ligase activity | 8.00E-04 |
| 28 | GO:0015301: anion:anion antiporter activity | 8.00E-04 |
| 29 | GO:0016407: acetyltransferase activity | 8.00E-04 |
| 30 | GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity | 9.77E-04 |
| 31 | GO:0004427: inorganic diphosphatase activity | 1.36E-03 |
| 32 | GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity | 1.57E-03 |
| 33 | GO:0004034: aldose 1-epimerase activity | 1.57E-03 |
| 34 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 2.02E-03 |
| 35 | GO:0004713: protein tyrosine kinase activity | 2.51E-03 |
| 36 | GO:0004386: helicase activity | 3.71E-03 |
| 37 | GO:0051536: iron-sulfur cluster binding | 4.48E-03 |
| 38 | GO:0004176: ATP-dependent peptidase activity | 5.12E-03 |
| 39 | GO:0016853: isomerase activity | 7.57E-03 |
| 40 | GO:0004843: thiol-dependent ubiquitin-specific protease activity | 8.33E-03 |
| 41 | GO:0004197: cysteine-type endopeptidase activity | 8.73E-03 |
| 42 | GO:0008237: metallopeptidase activity | 9.94E-03 |
| 43 | GO:0008483: transaminase activity | 9.94E-03 |
| 44 | GO:0016168: chlorophyll binding | 1.12E-02 |
| 45 | GO:0061630: ubiquitin protein ligase activity | 1.18E-02 |
| 46 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 1.39E-02 |
| 47 | GO:0004222: metalloendopeptidase activity | 1.39E-02 |
| 48 | GO:0005198: structural molecule activity | 2.00E-02 |
| 49 | GO:0031625: ubiquitin protein ligase binding | 2.45E-02 |
| 50 | GO:0008234: cysteine-type peptidase activity | 2.45E-02 |
| 51 | GO:0022857: transmembrane transporter activity | 2.80E-02 |
| 52 | GO:0016829: lyase activity | 3.63E-02 |
| 53 | GO:0030170: pyridoxal phosphate binding | 3.70E-02 |
| 54 | GO:0005507: copper ion binding | 4.19E-02 |
| 55 | GO:0005525: GTP binding | 4.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043674: columella | 8.25E-05 |
| 2 | GO:0005747: mitochondrial respiratory chain complex I | 3.14E-04 |
| 3 | GO:0016328: lateral plasma membrane | 3.29E-04 |
| 4 | GO:0009517: PSII associated light-harvesting complex II | 6.32E-04 |
| 5 | GO:0031372: UBC13-MMS2 complex | 6.32E-04 |
| 6 | GO:0031463: Cul3-RING ubiquitin ligase complex | 9.77E-04 |
| 7 | GO:0005773: vacuole | 1.11E-03 |
| 8 | GO:0031090: organelle membrane | 2.02E-03 |
| 9 | GO:0005765: lysosomal membrane | 2.77E-03 |
| 10 | GO:0005764: lysosome | 3.59E-03 |
| 11 | GO:0042651: thylakoid membrane | 4.80E-03 |
| 12 | GO:0045271: respiratory chain complex I | 4.80E-03 |
| 13 | GO:0005759: mitochondrial matrix | 5.32E-03 |
| 14 | GO:0009523: photosystem II | 7.95E-03 |
| 15 | GO:0031969: chloroplast membrane | 1.12E-02 |
| 16 | GO:0005819: spindle | 1.64E-02 |
| 17 | GO:0031902: late endosome membrane | 1.74E-02 |
| 18 | GO:0031966: mitochondrial membrane | 2.16E-02 |
| 19 | GO:0016607: nuclear speck | 2.62E-02 |
| 20 | GO:0005777: peroxisome | 3.39E-02 |
| 21 | GO:0005623: cell | 3.50E-02 |
| 22 | GO:0005737: cytoplasm | 3.93E-02 |
| 23 | GO:0005615: extracellular space | 4.67E-02 |