GO Enrichment Analysis of Co-expressed Genes with
AT3G59300
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 2 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 3 | GO:0006114: glycerol biosynthetic process | 0.00E+00 |
| 4 | GO:0010027: thylakoid membrane organization | 1.24E-07 |
| 5 | GO:0010206: photosystem II repair | 1.88E-05 |
| 6 | GO:0009773: photosynthetic electron transport in photosystem I | 3.37E-05 |
| 7 | GO:0043686: co-translational protein modification | 3.64E-05 |
| 8 | GO:0043007: maintenance of rDNA | 3.64E-05 |
| 9 | GO:0046520: sphingoid biosynthetic process | 3.64E-05 |
| 10 | GO:0009768: photosynthesis, light harvesting in photosystem I | 8.79E-05 |
| 11 | GO:0018026: peptidyl-lysine monomethylation | 9.09E-05 |
| 12 | GO:0090391: granum assembly | 1.58E-04 |
| 13 | GO:0071554: cell wall organization or biogenesis | 2.11E-04 |
| 14 | GO:0006020: inositol metabolic process | 2.33E-04 |
| 15 | GO:0042823: pyridoxal phosphate biosynthetic process | 2.33E-04 |
| 16 | GO:0006021: inositol biosynthetic process | 3.14E-04 |
| 17 | GO:0015994: chlorophyll metabolic process | 3.14E-04 |
| 18 | GO:0016311: dephosphorylation | 3.83E-04 |
| 19 | GO:0031365: N-terminal protein amino acid modification | 4.01E-04 |
| 20 | GO:0018298: protein-chromophore linkage | 4.02E-04 |
| 21 | GO:0010218: response to far red light | 4.43E-04 |
| 22 | GO:0042793: transcription from plastid promoter | 4.92E-04 |
| 23 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 4.92E-04 |
| 24 | GO:0046855: inositol phosphate dephosphorylation | 4.92E-04 |
| 25 | GO:0009637: response to blue light | 5.07E-04 |
| 26 | GO:0015979: photosynthesis | 5.34E-04 |
| 27 | GO:0010114: response to red light | 6.47E-04 |
| 28 | GO:0010196: nonphotochemical quenching | 6.87E-04 |
| 29 | GO:0016559: peroxisome fission | 7.90E-04 |
| 30 | GO:0009642: response to light intensity | 7.90E-04 |
| 31 | GO:0009657: plastid organization | 8.97E-04 |
| 32 | GO:0043085: positive regulation of catalytic activity | 1.36E-03 |
| 33 | GO:0006790: sulfur compound metabolic process | 1.49E-03 |
| 34 | GO:0050826: response to freezing | 1.62E-03 |
| 35 | GO:0010207: photosystem II assembly | 1.76E-03 |
| 36 | GO:0010020: chloroplast fission | 1.76E-03 |
| 37 | GO:0046854: phosphatidylinositol phosphorylation | 1.89E-03 |
| 38 | GO:0008299: isoprenoid biosynthetic process | 2.33E-03 |
| 39 | GO:0061077: chaperone-mediated protein folding | 2.48E-03 |
| 40 | GO:0009561: megagametogenesis | 2.96E-03 |
| 41 | GO:0009658: chloroplast organization | 3.13E-03 |
| 42 | GO:0006662: glycerol ether metabolic process | 3.47E-03 |
| 43 | GO:1901657: glycosyl compound metabolic process | 4.37E-03 |
| 44 | GO:0015995: chlorophyll biosynthetic process | 5.76E-03 |
| 45 | GO:0034599: cellular response to oxidative stress | 7.51E-03 |
| 46 | GO:0009640: photomorphogenesis | 8.68E-03 |
| 47 | GO:0009416: response to light stimulus | 1.01E-02 |
| 48 | GO:0006364: rRNA processing | 1.07E-02 |
| 49 | GO:0009790: embryo development | 1.80E-02 |
| 50 | GO:0007623: circadian rhythm | 2.02E-02 |
| 51 | GO:0008380: RNA splicing | 2.29E-02 |
| 52 | GO:0009723: response to ethylene | 3.06E-02 |
| 53 | GO:0045454: cell redox homeostasis | 3.66E-02 |
| 54 | GO:0032259: methylation | 4.12E-02 |
| 55 | GO:0006281: DNA repair | 4.25E-02 |
| 56 | GO:0006397: mRNA processing | 4.38E-02 |
| 57 | GO:0009793: embryo development ending in seed dormancy | 4.73E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043136: glycerol-3-phosphatase activity | 0.00E+00 |
| 2 | GO:0000121: glycerol-1-phosphatase activity | 0.00E+00 |
| 3 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 4 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 5 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 6 | GO:0000170: sphingosine hydroxylase activity | 3.64E-05 |
| 7 | GO:0042586: peptide deformylase activity | 3.64E-05 |
| 8 | GO:0031072: heat shock protein binding | 4.65E-05 |
| 9 | GO:0031409: pigment binding | 6.97E-05 |
| 10 | GO:0005528: FK506 binding | 7.86E-05 |
| 11 | GO:0019172: glyoxalase III activity | 9.09E-05 |
| 12 | GO:0047746: chlorophyllase activity | 9.09E-05 |
| 13 | GO:0052832: inositol monophosphate 3-phosphatase activity | 9.09E-05 |
| 14 | GO:0042284: sphingolipid delta-4 desaturase activity | 9.09E-05 |
| 15 | GO:0008934: inositol monophosphate 1-phosphatase activity | 9.09E-05 |
| 16 | GO:0052833: inositol monophosphate 4-phosphatase activity | 9.09E-05 |
| 17 | GO:0070402: NADPH binding | 1.58E-04 |
| 18 | GO:0016413: O-acetyltransferase activity | 2.91E-04 |
| 19 | GO:0016279: protein-lysine N-methyltransferase activity | 3.14E-04 |
| 20 | GO:0004045: aminoacyl-tRNA hydrolase activity | 3.14E-04 |
| 21 | GO:0016168: chlorophyll binding | 3.27E-04 |
| 22 | GO:0004462: lactoylglutathione lyase activity | 4.92E-04 |
| 23 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 5.88E-04 |
| 24 | GO:0005198: structural molecule activity | 7.24E-04 |
| 25 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.50E-04 |
| 26 | GO:0004033: aldo-keto reductase (NADP) activity | 7.90E-04 |
| 27 | GO:0051082: unfolded protein binding | 1.20E-03 |
| 28 | GO:0008047: enzyme activator activity | 1.24E-03 |
| 29 | GO:0046872: metal ion binding | 2.20E-03 |
| 30 | GO:0042802: identical protein binding | 2.58E-03 |
| 31 | GO:0003756: protein disulfide isomerase activity | 2.96E-03 |
| 32 | GO:0047134: protein-disulfide reductase activity | 3.13E-03 |
| 33 | GO:0004791: thioredoxin-disulfide reductase activity | 3.64E-03 |
| 34 | GO:0016853: isomerase activity | 3.64E-03 |
| 35 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 4.37E-03 |
| 36 | GO:0003924: GTPase activity | 5.69E-03 |
| 37 | GO:0102483: scopolin beta-glucosidase activity | 5.76E-03 |
| 38 | GO:0030145: manganese ion binding | 6.83E-03 |
| 39 | GO:0003993: acid phosphatase activity | 7.51E-03 |
| 40 | GO:0008422: beta-glucosidase activity | 7.74E-03 |
| 41 | GO:0015035: protein disulfide oxidoreductase activity | 1.40E-02 |
| 42 | GO:0005525: GTP binding | 1.67E-02 |
| 43 | GO:0008017: microtubule binding | 2.09E-02 |
| 44 | GO:0003824: catalytic activity | 2.25E-02 |
| 45 | GO:0016491: oxidoreductase activity | 2.70E-02 |
| 46 | GO:0000287: magnesium ion binding | 2.72E-02 |
| 47 | GO:0016787: hydrolase activity | 4.38E-02 |
| 48 | GO:0009055: electron carrier activity | 4.46E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 4.26E-24 |
| 2 | GO:0009534: chloroplast thylakoid | 6.10E-23 |
| 3 | GO:0009535: chloroplast thylakoid membrane | 4.85E-20 |
| 4 | GO:0009543: chloroplast thylakoid lumen | 1.94E-09 |
| 5 | GO:0031977: thylakoid lumen | 7.86E-09 |
| 6 | GO:0009570: chloroplast stroma | 1.54E-08 |
| 7 | GO:0009579: thylakoid | 6.27E-08 |
| 8 | GO:0010287: plastoglobule | 4.30E-06 |
| 9 | GO:0009515: granal stacked thylakoid | 3.64E-05 |
| 10 | GO:0009941: chloroplast envelope | 5.61E-05 |
| 11 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 9.09E-05 |
| 12 | GO:0009522: photosystem I | 1.82E-04 |
| 13 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.01E-03 |
| 14 | GO:0009508: plastid chromosome | 1.62E-03 |
| 15 | GO:0030095: chloroplast photosystem II | 1.76E-03 |
| 16 | GO:0030076: light-harvesting complex | 1.89E-03 |
| 17 | GO:0009654: photosystem II oxygen evolving complex | 2.33E-03 |
| 18 | GO:0009523: photosystem II | 3.82E-03 |
| 19 | GO:0019898: extrinsic component of membrane | 3.82E-03 |
| 20 | GO:0009295: nucleoid | 4.75E-03 |
| 21 | GO:0030529: intracellular ribonucleoprotein complex | 5.15E-03 |
| 22 | GO:0009707: chloroplast outer membrane | 6.18E-03 |
| 23 | GO:0009706: chloroplast inner membrane | 1.37E-02 |
| 24 | GO:0016021: integral component of membrane | 1.45E-02 |
| 25 | GO:0005623: cell | 1.64E-02 |
| 26 | GO:0031969: chloroplast membrane | 3.22E-02 |