co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G59080

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071289: cellular response to nickel ion	0.00E+00
2	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
3	GO:1900067: regulation of cellular response to alkaline pH	0.00E+00
4	GO:0006862: nucleotide transport	0.00E+00
5	GO:2001142: nicotinate transport	0.00E+00
6	GO:0042353: fucose biosynthetic process	0.00E+00
7	GO:0034775: glutathione transmembrane transport	0.00E+00
8	GO:0010046: response to mycotoxin	0.00E+00
9	GO:0046967: cytosol to ER transport	0.00E+00
10	GO:0035264: multicellular organism growth	0.00E+00
11	GO:0032499: detection of peptidoglycan	0.00E+00
12	GO:2001143: N-methylnicotinate transport	0.00E+00
13	GO:0002752: cell surface pattern recognition receptor signaling pathway	0.00E+00
14	GO:0010200: response to chitin	7.75E-24
15	GO:0002679: respiratory burst involved in defense response	2.63E-07
16	GO:0051865: protein autoubiquitination	4.69E-07
17	GO:0009611: response to wounding	7.16E-07
18	GO:0006468: protein phosphorylation	2.11E-05
19	GO:2000280: regulation of root development	3.56E-05
20	GO:0051707: response to other organism	4.20E-05
21	GO:0010193: response to ozone	5.18E-05
22	GO:0009620: response to fungus	1.43E-04
23	GO:0006751: glutathione catabolic process	1.90E-04
24	GO:0009695: jasmonic acid biosynthetic process	2.01E-04
25	GO:0009737: response to abscisic acid	2.95E-04
26	GO:0006955: immune response	3.33E-04
27	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	3.33E-04
28	GO:0006952: defense response	3.64E-04
29	GO:0010726: positive regulation of hydrogen peroxide metabolic process	3.73E-04
30	GO:0051180: vitamin transport	3.73E-04
31	GO:0006562: proline catabolic process	3.73E-04
32	GO:0007229: integrin-mediated signaling pathway	3.73E-04
33	GO:0030974: thiamine pyrophosphate transport	3.73E-04
34	GO:0050691: regulation of defense response to virus by host	3.73E-04
35	GO:0006680: glucosylceramide catabolic process	3.73E-04
36	GO:0032491: detection of molecule of fungal origin	3.73E-04
37	GO:1900384: regulation of flavonol biosynthetic process	3.73E-04
38	GO:2000070: regulation of response to water deprivation	4.18E-04
39	GO:0045010: actin nucleation	4.18E-04
40	GO:0006470: protein dephosphorylation	6.24E-04
41	GO:0042754: negative regulation of circadian rhythm	8.10E-04
42	GO:0010372: positive regulation of gibberellin biosynthetic process	8.10E-04
43	GO:0006741: NADP biosynthetic process	8.10E-04
44	GO:2000030: regulation of response to red or far red light	8.10E-04
45	GO:0015893: drug transport	8.10E-04
46	GO:0046939: nucleotide phosphorylation	8.10E-04
47	GO:0010133: proline catabolic process to glutamate	8.10E-04
48	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.11E-03
49	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	1.31E-03
50	GO:0080168: abscisic acid transport	1.31E-03
51	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	1.31E-03
52	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	1.31E-03
53	GO:0019674: NAD metabolic process	1.31E-03
54	GO:0009723: response to ethylene	1.37E-03
55	GO:0070588: calcium ion transmembrane transport	1.58E-03
56	GO:0045087: innate immune response	1.76E-03
57	GO:0006537: glutamate biosynthetic process	1.89E-03
58	GO:0033014: tetrapyrrole biosynthetic process	1.89E-03
59	GO:0030100: regulation of endocytosis	1.89E-03
60	GO:0009399: nitrogen fixation	1.89E-03
61	GO:0071323: cellular response to chitin	1.89E-03
62	GO:0019363: pyridine nucleotide biosynthetic process	1.89E-03
63	GO:0009863: salicylic acid mediated signaling pathway	1.95E-03
64	GO:0031408: oxylipin biosynthetic process	2.37E-03
65	GO:0009652: thigmotropism	2.54E-03
66	GO:0045727: positive regulation of translation	2.54E-03
67	GO:0006536: glutamate metabolic process	2.54E-03
68	GO:0010107: potassium ion import	2.54E-03
69	GO:0071219: cellular response to molecule of bacterial origin	2.54E-03
70	GO:0045324: late endosome to vacuole transport	2.54E-03
71	GO:0034440: lipid oxidation	2.54E-03
72	GO:1902347: response to strigolactone	2.54E-03
73	GO:0009694: jasmonic acid metabolic process	2.54E-03
74	GO:0015743: malate transport	2.54E-03
75	GO:0009686: gibberellin biosynthetic process	2.83E-03
76	GO:0009651: response to salt stress	3.01E-03
77	GO:0009414: response to water deprivation	3.10E-03
78	GO:0009164: nucleoside catabolic process	3.25E-03
79	GO:0030041: actin filament polymerization	3.25E-03
80	GO:0045487: gibberellin catabolic process	3.25E-03
81	GO:0010117: photoprotection	3.25E-03
82	GO:0006979: response to oxidative stress	3.33E-03
83	GO:0009753: response to jasmonic acid	3.48E-03
84	GO:0010256: endomembrane system organization	4.02E-03
85	GO:0048317: seed morphogenesis	4.02E-03
86	GO:0006796: phosphate-containing compound metabolic process	4.02E-03
87	GO:0047484: regulation of response to osmotic stress	4.02E-03
88	GO:1900425: negative regulation of defense response to bacterium	4.02E-03
89	GO:0010337: regulation of salicylic acid metabolic process	4.02E-03
90	GO:0010942: positive regulation of cell death	4.02E-03
91	GO:0048544: recognition of pollen	4.18E-03
92	GO:0009749: response to glucose	4.48E-03
93	GO:0002229: defense response to oomycetes	4.79E-03
94	GO:0009873: ethylene-activated signaling pathway	4.82E-03
95	GO:2000067: regulation of root morphogenesis	4.85E-03
96	GO:1901001: negative regulation of response to salt stress	4.85E-03
97	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	4.85E-03
98	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	4.85E-03
99	GO:0010555: response to mannitol	4.85E-03
100	GO:0080086: stamen filament development	4.85E-03
101	GO:0006970: response to osmotic stress	5.20E-03
102	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	5.73E-03
103	GO:1900057: positive regulation of leaf senescence	5.73E-03
104	GO:0051510: regulation of unidimensional cell growth	5.73E-03
105	GO:0006401: RNA catabolic process	5.73E-03
106	GO:0016567: protein ubiquitination	5.88E-03
107	GO:0009742: brassinosteroid mediated signaling pathway	6.01E-03
108	GO:0006402: mRNA catabolic process	6.65E-03
109	GO:1900150: regulation of defense response to fungus	6.65E-03
110	GO:0046777: protein autophosphorylation	7.14E-03
111	GO:0009699: phenylpropanoid biosynthetic process	7.64E-03
112	GO:0009932: cell tip growth	7.64E-03
113	GO:0007186: G-protein coupled receptor signaling pathway	7.64E-03
114	GO:0048193: Golgi vesicle transport	7.64E-03
115	GO:0098656: anion transmembrane transport	8.66E-03
116	GO:0090305: nucleic acid phosphodiester bond hydrolysis	8.66E-03
117	GO:0090333: regulation of stomatal closure	8.66E-03
118	GO:0006783: heme biosynthetic process	8.66E-03
119	GO:0009835: fruit ripening	8.66E-03
120	GO:0035556: intracellular signal transduction	9.24E-03
121	GO:0006779: porphyrin-containing compound biosynthetic process	9.74E-03
122	GO:0009086: methionine biosynthetic process	9.74E-03
123	GO:0008202: steroid metabolic process	9.74E-03
124	GO:0042742: defense response to bacterium	9.82E-03
125	GO:0055062: phosphate ion homeostasis	1.09E-02
126	GO:0006896: Golgi to vacuole transport	1.09E-02
127	GO:0006782: protoporphyrinogen IX biosynthetic process	1.09E-02
128	GO:0019538: protein metabolic process	1.09E-02
129	GO:0048829: root cap development	1.09E-02
130	GO:0010015: root morphogenesis	1.20E-02
131	GO:0009698: phenylpropanoid metabolic process	1.20E-02
132	GO:1903507: negative regulation of nucleic acid-templated transcription	1.20E-02
133	GO:0009750: response to fructose	1.20E-02
134	GO:0030148: sphingolipid biosynthetic process	1.20E-02
135	GO:0006839: mitochondrial transport	1.32E-02
136	GO:0007166: cell surface receptor signaling pathway	1.33E-02
137	GO:0071365: cellular response to auxin stimulus	1.33E-02
138	GO:0009617: response to bacterium	1.40E-02
139	GO:0055046: microgametogenesis	1.45E-02
140	GO:0009640: photomorphogenesis	1.49E-02
141	GO:0048467: gynoecium development	1.58E-02
142	GO:0034605: cellular response to heat	1.58E-02
143	GO:0002237: response to molecule of bacterial origin	1.58E-02
144	GO:0009969: xyloglucan biosynthetic process	1.71E-02
145	GO:0009901: anther dehiscence	1.71E-02
146	GO:0071732: cellular response to nitric oxide	1.71E-02
147	GO:0031347: regulation of defense response	1.81E-02
148	GO:2000377: regulation of reactive oxygen species metabolic process	1.99E-02
149	GO:0010224: response to UV-B	2.08E-02
150	GO:0048278: vesicle docking	2.29E-02
151	GO:0016998: cell wall macromolecule catabolic process	2.29E-02
152	GO:0030245: cellulose catabolic process	2.44E-02
153	GO:0016226: iron-sulfur cluster assembly	2.44E-02
154	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.44E-02
155	GO:0030433: ubiquitin-dependent ERAD pathway	2.44E-02
156	GO:0031348: negative regulation of defense response	2.44E-02
157	GO:0009693: ethylene biosynthetic process	2.60E-02
158	GO:0071215: cellular response to abscisic acid stimulus	2.60E-02
159	GO:0071369: cellular response to ethylene stimulus	2.60E-02
160	GO:0040007: growth	2.60E-02
161	GO:0009738: abscisic acid-activated signaling pathway	2.62E-02
162	GO:0009555: pollen development	2.75E-02
163	GO:0048443: stamen development	2.76E-02
164	GO:0019722: calcium-mediated signaling	2.76E-02
165	GO:0009306: protein secretion	2.76E-02
166	GO:0010214: seed coat development	2.76E-02
167	GO:0048653: anther development	3.08E-02
168	GO:0042631: cellular response to water deprivation	3.08E-02
169	GO:0000271: polysaccharide biosynthetic process	3.08E-02
170	GO:0010118: stomatal movement	3.08E-02
171	GO:0009960: endosperm development	3.25E-02
172	GO:0045489: pectin biosynthetic process	3.25E-02
173	GO:0009741: response to brassinosteroid	3.25E-02
174	GO:0045892: negative regulation of transcription, DNA-templated	3.27E-02
175	GO:0000398: mRNA splicing, via spliceosome	3.31E-02
176	GO:0061025: membrane fusion	3.42E-02
177	GO:0006355: regulation of transcription, DNA-templated	3.45E-02
178	GO:0006623: protein targeting to vacuole	3.60E-02
179	GO:0009791: post-embryonic development	3.60E-02
180	GO:0009845: seed germination	3.88E-02
181	GO:0031047: gene silencing by RNA	3.96E-02
182	GO:0009630: gravitropism	3.96E-02
183	GO:0009751: response to salicylic acid	4.08E-02
184	GO:0071281: cellular response to iron ion	4.14E-02
185	GO:1901657: glycosyl compound metabolic process	4.14E-02
186	GO:0009790: embryo development	4.18E-02
187	GO:0019760: glucosinolate metabolic process	4.33E-02
188	GO:0009639: response to red or far red light	4.33E-02
189	GO:0006904: vesicle docking involved in exocytosis	4.52E-02
190	GO:0009409: response to cold	4.63E-02
191	GO:0051607: defense response to virus	4.71E-02
192	GO:0001666: response to hypoxia	4.91E-02
193	GO:0007623: circadian rhythm	4.93E-02
194	GO:0006351: transcription, DNA-templated	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0015215: nucleotide transmembrane transporter activity	0.00E+00
2	GO:0070566: adenylyltransferase activity	0.00E+00
3	GO:0008419: RNA lariat debranching enzyme activity	0.00E+00
4	GO:0005522: profilin binding	0.00E+00
5	GO:2001080: chitosan binding	0.00E+00
6	GO:0090417: N-methylnicotinate transporter activity	0.00E+00
7	GO:0080123: jasmonate-amino synthetase activity	0.00E+00
8	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
9	GO:0090416: nicotinate transporter activity	0.00E+00
10	GO:0016301: kinase activity	8.08E-06
11	GO:0003840: gamma-glutamyltransferase activity	2.19E-05
12	GO:0036374: glutathione hydrolase activity	2.19E-05
13	GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity	4.81E-05
14	GO:0005524: ATP binding	2.34E-04
15	GO:0004672: protein kinase activity	2.94E-04
16	GO:0102425: myricetin 3-O-glucosyltransferase activity	3.33E-04
17	GO:0102360: daphnetin 3-O-glucosyltransferase activity	3.33E-04
18	GO:0090422: thiamine pyrophosphate transporter activity	3.73E-04
19	GO:0015085: calcium ion transmembrane transporter activity	3.73E-04
20	GO:0004657: proline dehydrogenase activity	3.73E-04
21	GO:0004348: glucosylceramidase activity	3.73E-04
22	GO:0047150: betaine-homocysteine S-methyltransferase activity	3.73E-04
23	GO:0090440: abscisic acid transporter activity	3.73E-04
24	GO:0042736: NADH kinase activity	3.73E-04
25	GO:0047893: flavonol 3-O-glucosyltransferase activity	4.18E-04
26	GO:0003951: NAD+ kinase activity	5.11E-04
27	GO:0004722: protein serine/threonine phosphatase activity	6.24E-04
28	GO:0043565: sequence-specific DNA binding	6.94E-04
29	GO:0004842: ubiquitin-protein transferase activity	7.77E-04
30	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	8.09E-04
31	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	8.10E-04
32	GO:0016629: 12-oxophytodienoate reductase activity	8.10E-04
33	GO:0004103: choline kinase activity	8.10E-04
34	GO:0008883: glutamyl-tRNA reductase activity	8.10E-04
35	GO:0001047: core promoter binding	8.10E-04
36	GO:0003958: NADPH-hemoprotein reductase activity	8.10E-04
37	GO:0019888: protein phosphatase regulator activity	1.25E-03
38	GO:0031683: G-protein beta/gamma-subunit complex binding	1.31E-03
39	GO:0004758: serine C-palmitoyltransferase activity	1.31E-03
40	GO:0046423: allene-oxide cyclase activity	1.31E-03
41	GO:0004383: guanylate cyclase activity	1.31E-03
42	GO:0016165: linoleate 13S-lipoxygenase activity	1.31E-03
43	GO:0001664: G-protein coupled receptor binding	1.31E-03
44	GO:0004674: protein serine/threonine kinase activity	1.50E-03
45	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.57E-03
46	GO:0019201: nucleotide kinase activity	1.89E-03
47	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.89E-03
48	GO:0001653: peptide receptor activity	1.89E-03
49	GO:0004351: glutamate decarboxylase activity	1.89E-03
50	GO:0035251: UDP-glucosyltransferase activity	2.37E-03
51	GO:0043015: gamma-tubulin binding	2.54E-03
52	GO:0019199: transmembrane receptor protein kinase activity	2.54E-03
53	GO:0005253: anion channel activity	2.54E-03
54	GO:0047631: ADP-ribose diphosphatase activity	3.25E-03
55	GO:0004356: glutamate-ammonia ligase activity	3.25E-03
56	GO:0000210: NAD+ diphosphatase activity	4.02E-03
57	GO:0010181: FMN binding	4.18E-03
58	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	4.85E-03
59	GO:0004017: adenylate kinase activity	4.85E-03
60	GO:0019900: kinase binding	4.85E-03
61	GO:0003779: actin binding	5.37E-03
62	GO:0004427: inorganic diphosphatase activity	5.73E-03
63	GO:0016621: cinnamoyl-CoA reductase activity	5.73E-03
64	GO:0015140: malate transmembrane transporter activity	5.73E-03
65	GO:0019899: enzyme binding	5.73E-03
66	GO:0008143: poly(A) binding	5.73E-03
67	GO:0004143: diacylglycerol kinase activity	5.73E-03
68	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	6.65E-03
69	GO:0016758: transferase activity, transferring hexosyl groups	7.19E-03
70	GO:0008142: oxysterol binding	7.64E-03
71	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	7.64E-03
72	GO:0030170: pyridoxal phosphate binding	8.49E-03
73	GO:0003700: transcription factor activity, sequence-specific DNA binding	9.54E-03
74	GO:0047617: acyl-CoA hydrolase activity	9.74E-03
75	GO:0044212: transcription regulatory region DNA binding	9.82E-03
76	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.03E-02
77	GO:0004864: protein phosphatase inhibitor activity	1.09E-02
78	GO:0003676: nucleic acid binding	1.25E-02
79	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.26E-02
80	GO:0009055: electron carrier activity	1.30E-02
81	GO:0030246: carbohydrate binding	1.41E-02
82	GO:0005388: calcium-transporting ATPase activity	1.45E-02
83	GO:0000175: 3'-5'-exoribonuclease activity	1.45E-02
84	GO:0005315: inorganic phosphate transmembrane transporter activity	1.45E-02
85	GO:0005262: calcium channel activity	1.45E-02
86	GO:0005516: calmodulin binding	1.70E-02
87	GO:0008061: chitin binding	1.71E-02
88	GO:0003714: transcription corepressor activity	1.99E-02
89	GO:0004540: ribonuclease activity	2.29E-02
90	GO:0004707: MAP kinase activity	2.29E-02
91	GO:0019706: protein-cysteine S-palmitoyltransferase activity	2.29E-02
92	GO:0008408: 3'-5' exonuclease activity	2.29E-02
93	GO:0050660: flavin adenine dinucleotide binding	2.35E-02
94	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.44E-02
95	GO:0022891: substrate-specific transmembrane transporter activity	2.60E-02
96	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.62E-02
97	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.62E-02
98	GO:0008514: organic anion transmembrane transporter activity	2.76E-02
99	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	3.20E-02
100	GO:0046872: metal ion binding	3.27E-02
101	GO:0016853: isomerase activity	3.42E-02
102	GO:0050662: coenzyme binding	3.42E-02
103	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	3.66E-02
104	GO:0004518: nuclease activity	3.96E-02
105	GO:0051015: actin filament binding	4.14E-02
106	GO:0015144: carbohydrate transmembrane transporter activity	4.28E-02
107	GO:0015297: antiporter activity	4.71E-02
108	GO:0005351: sugar:proton symporter activity	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0005911: cell-cell junction	3.73E-04
2	GO:0016442: RISC complex	3.73E-04
3	GO:0005737: cytoplasm	4.08E-04
4	GO:0010494: cytoplasmic stress granule	6.13E-04
5	GO:0005886: plasma membrane	6.60E-04
6	GO:0000159: protein phosphatase type 2A complex	9.70E-04
7	GO:0070062: extracellular exosome	1.89E-03
8	GO:0000178: exosome (RNase complex)	3.25E-03
9	GO:0005770: late endosome	3.88E-03
10	GO:0030140: trans-Golgi network transport vesicle	4.02E-03
11	GO:0031463: Cul3-RING ubiquitin ligase complex	4.02E-03
12	GO:0030173: integral component of Golgi membrane	4.85E-03
13	GO:0000932: P-body	6.94E-03
14	GO:0016604: nuclear body	9.74E-03
15	GO:0090404: pollen tube tip	1.20E-02
16	GO:0071013: catalytic step 2 spliceosome	1.20E-02
17	GO:0048471: perinuclear region of cytoplasm	1.20E-02
18	GO:0031902: late endosome membrane	1.37E-02
19	GO:0005758: mitochondrial intermembrane space	1.99E-02
20	GO:0030136: clathrin-coated vesicle	2.92E-02
21	GO:0005634: nucleus	3.22E-02
22	GO:0005743: mitochondrial inner membrane	3.79E-02
23	GO:0000145: exocyst	3.96E-02
24	GO:0032580: Golgi cisterna membrane	4.33E-02