Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G58790

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019593: mannitol biosynthetic process0.00E+00
2GO:0018107: peptidyl-threonine phosphorylation1.27E-04
3GO:0070588: calcium ion transmembrane transport1.64E-04
4GO:0006898: receptor-mediated endocytosis1.74E-04
5GO:1901679: nucleotide transmembrane transport1.74E-04
6GO:0010507: negative regulation of autophagy1.74E-04
7GO:0010289: homogalacturonan biosynthetic process1.74E-04
8GO:0080121: AMP transport2.93E-04
9GO:0044210: 'de novo' CTP biosynthetic process2.93E-04
10GO:0016045: detection of bacterium2.93E-04
11GO:0010359: regulation of anion channel activity2.93E-04
12GO:0010288: response to lead ion2.93E-04
13GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid2.93E-04
14GO:0010325: raffinose family oligosaccharide biosynthetic process2.93E-04
15GO:0010371: regulation of gibberellin biosynthetic process4.23E-04
16GO:0009414: response to water deprivation4.74E-04
17GO:0009873: ethylene-activated signaling pathway5.17E-04
18GO:0015867: ATP transport5.65E-04
19GO:0046345: abscisic acid catabolic process5.65E-04
20GO:0045490: pectin catabolic process6.15E-04
21GO:0019760: glucosinolate metabolic process6.19E-04
22GO:0009739: response to gibberellin7.07E-04
23GO:0006656: phosphatidylcholine biosynthetic process7.14E-04
24GO:0006665: sphingolipid metabolic process7.14E-04
25GO:0032957: inositol trisphosphate metabolic process7.14E-04
26GO:0035435: phosphate ion transmembrane transport8.73E-04
27GO:1900425: negative regulation of defense response to bacterium8.73E-04
28GO:0006751: glutathione catabolic process8.73E-04
29GO:0015866: ADP transport8.73E-04
30GO:0045962: positive regulation of development, heterochronic8.73E-04
31GO:2000033: regulation of seed dormancy process1.04E-03
32GO:0098655: cation transmembrane transport1.04E-03
33GO:0009938: negative regulation of gibberellic acid mediated signaling pathway1.40E-03
34GO:0007155: cell adhesion1.40E-03
35GO:0098656: anion transmembrane transport1.80E-03
36GO:0009737: response to abscisic acid1.85E-03
37GO:0042538: hyperosmotic salinity response1.89E-03
38GO:0042761: very long-chain fatty acid biosynthetic process2.01E-03
39GO:0009641: shade avoidance2.23E-03
40GO:0006949: syncytium formation2.23E-03
41GO:0052544: defense response by callose deposition in cell wall2.46E-03
42GO:0048367: shoot system development2.46E-03
43GO:0030154: cell differentiation2.74E-03
44GO:0042545: cell wall modification2.78E-03
45GO:0009624: response to nematode2.86E-03
46GO:0018105: peptidyl-serine phosphorylation2.94E-03
47GO:0050826: response to freezing2.94E-03
48GO:0005986: sucrose biosynthetic process2.94E-03
49GO:0010025: wax biosynthetic process3.71E-03
50GO:0009863: salicylic acid mediated signaling pathway3.98E-03
51GO:0010187: negative regulation of seed germination3.98E-03
52GO:2000377: regulation of reactive oxygen species metabolic process3.98E-03
53GO:0009695: jasmonic acid biosynthetic process4.26E-03
54GO:0031408: oxylipin biosynthetic process4.54E-03
55GO:0009611: response to wounding4.76E-03
56GO:0001944: vasculature development5.13E-03
57GO:0009831: plant-type cell wall modification involved in multidimensional cell growth5.13E-03
58GO:0048443: stamen development5.43E-03
59GO:0010268: brassinosteroid homeostasis6.38E-03
60GO:0048510: regulation of timing of transition from vegetative to reproductive phase7.38E-03
61GO:0010193: response to ozone7.38E-03
62GO:0016132: brassinosteroid biosynthetic process7.38E-03
63GO:1901657: glycosyl compound metabolic process8.07E-03
64GO:0009639: response to red or far red light8.43E-03
65GO:0009828: plant-type cell wall loosening8.43E-03
66GO:0016125: sterol metabolic process8.43E-03
67GO:0006904: vesicle docking involved in exocytosis8.79E-03
68GO:0010029: regulation of seed germination9.92E-03
69GO:0016049: cell growth1.11E-02
70GO:0071555: cell wall organization1.13E-02
71GO:0006979: response to oxidative stress1.15E-02
72GO:0009867: jasmonic acid mediated signaling pathway1.36E-02
73GO:0009751: response to salicylic acid1.37E-02
74GO:0048364: root development1.45E-02
75GO:0006839: mitochondrial transport1.49E-02
76GO:0008283: cell proliferation1.63E-02
77GO:0010114: response to red light1.63E-02
78GO:0051707: response to other organism1.63E-02
79GO:0009965: leaf morphogenesis1.77E-02
80GO:0009664: plant-type cell wall organization1.91E-02
81GO:0005975: carbohydrate metabolic process1.93E-02
82GO:0009809: lignin biosynthetic process2.01E-02
83GO:0043086: negative regulation of catalytic activity2.26E-02
84GO:0006351: transcription, DNA-templated2.27E-02
85GO:0009620: response to fungus2.42E-02
86GO:0009740: gibberellic acid mediated signaling pathway2.47E-02
87GO:0009555: pollen development2.48E-02
88GO:0035556: intracellular signal transduction2.62E-02
89GO:0007275: multicellular organism development2.66E-02
90GO:0055085: transmembrane transport3.14E-02
91GO:0009058: biosynthetic process3.15E-02
92GO:0006470: protein dephosphorylation4.19E-02
93GO:0007166: cell surface receptor signaling pathway4.19E-02
94GO:0009617: response to bacterium4.32E-02
95GO:0010468: regulation of gene expression4.32E-02
96GO:0050832: defense response to fungus4.43E-02
RankGO TermAdjusted P value
1GO:0003883: CTP synthase activity2.69E-06
2GO:0004105: choline-phosphate cytidylyltransferase activity7.23E-05
3GO:0016629: 12-oxophytodienoate reductase activity1.74E-04
4GO:0017040: ceramidase activity1.74E-04
5GO:0003839: gamma-glutamylcyclotransferase activity1.74E-04
6GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity2.93E-04
7GO:0047274: galactinol-sucrose galactosyltransferase activity2.93E-04
8GO:0010295: (+)-abscisic acid 8'-hydroxylase activity2.93E-04
9GO:0047325: inositol tetrakisphosphate 1-kinase activity2.93E-04
10GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity4.23E-04
11GO:0043565: sequence-specific DNA binding6.92E-04
12GO:0080122: AMP transmembrane transporter activity7.14E-04
13GO:0070696: transmembrane receptor protein serine/threonine kinase binding7.14E-04
14GO:0005347: ATP transmembrane transporter activity1.04E-03
15GO:0015217: ADP transmembrane transporter activity1.04E-03
16GO:0016621: cinnamoyl-CoA reductase activity1.21E-03
17GO:0000989: transcription factor activity, transcription factor binding1.80E-03
18GO:0045330: aspartyl esterase activity2.24E-03
19GO:0030599: pectinesterase activity2.70E-03
20GO:0005262: calcium channel activity2.94E-03
21GO:0015114: phosphate ion transmembrane transporter activity2.94E-03
22GO:0005388: calcium-transporting ATPase activity2.94E-03
23GO:0008083: growth factor activity3.19E-03
24GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.19E-03
25GO:0008146: sulfotransferase activity3.44E-03
26GO:0004857: enzyme inhibitor activity3.98E-03
27GO:0046910: pectinesterase inhibitor activity4.58E-03
28GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.58E-03
29GO:0030570: pectate lyase activity5.13E-03
30GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds6.59E-03
31GO:0010181: FMN binding6.70E-03
32GO:0016722: oxidoreductase activity, oxidizing metal ions8.79E-03
33GO:0102483: scopolin beta-glucosidase activity1.07E-02
34GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.11E-02
35GO:0044212: transcription regulatory region DNA binding1.13E-02
36GO:0004222: metalloendopeptidase activity1.23E-02
37GO:0003993: acid phosphatase activity1.40E-02
38GO:0008422: beta-glucosidase activity1.45E-02
39GO:0043621: protein self-association1.72E-02
40GO:0003700: transcription factor activity, sequence-specific DNA binding2.14E-02
41GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.31E-02
42GO:0080043: quercetin 3-O-glucosyltransferase activity2.42E-02
43GO:0080044: quercetin 7-O-glucosyltransferase activity2.42E-02
44GO:0004674: protein serine/threonine kinase activity2.66E-02
45GO:0016829: lyase activity3.20E-02
46GO:0015144: carbohydrate transmembrane transporter activity3.44E-02
47GO:0005516: calmodulin binding3.72E-02
48GO:0005351: sugar:proton symporter activity3.75E-02
49GO:0042626: ATPase activity, coupled to transmembrane movement of substances4.52E-02
RankGO TermAdjusted P value
1GO:0005622: intracellular3.90E-04
2GO:0005618: cell wall3.90E-04
3GO:0046658: anchored component of plasma membrane8.71E-04
4GO:0031012: extracellular matrix2.94E-03
5GO:0000145: exocyst7.72E-03
6GO:0031225: anchored component of membrane8.15E-03
7GO:0005768: endosome9.92E-03
8GO:0005743: mitochondrial inner membrane1.29E-02
9GO:0009505: plant-type cell wall1.51E-02
10GO:0043231: intracellular membrane-bounded organelle1.54E-02
11GO:0010008: endosome membrane2.31E-02
12GO:0005802: trans-Golgi network3.96E-02
13GO:0009506: plasmodesma4.28E-02
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Gene type



Gene DE type