Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G58700

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000494: box C/D snoRNA 3'-end processing0.00E+00
2GO:0006384: transcription initiation from RNA polymerase III promoter0.00E+00
3GO:1904874: positive regulation of telomerase RNA localization to Cajal body0.00E+00
4GO:0043461: proton-transporting ATP synthase complex assembly0.00E+00
5GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
6GO:1990258: histone glutamine methylation0.00E+00
7GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
8GO:0090239: regulation of histone H4 acetylation0.00E+00
9GO:0072321: chaperone-mediated protein transport0.00E+00
10GO:0000740: nuclear membrane fusion0.00E+00
11GO:0044843: cell cycle G1/S phase transition0.00E+00
12GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
13GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
14GO:0006412: translation4.40E-179
15GO:0042254: ribosome biogenesis4.30E-72
16GO:0000027: ribosomal large subunit assembly4.64E-13
17GO:0006626: protein targeting to mitochondrion3.14E-12
18GO:0000028: ribosomal small subunit assembly1.94E-08
19GO:0006364: rRNA processing8.28E-07
20GO:0000398: mRNA splicing, via spliceosome5.54E-06
21GO:0000387: spliceosomal snRNP assembly5.88E-06
22GO:0009967: positive regulation of signal transduction2.11E-05
23GO:0045041: protein import into mitochondrial intermembrane space2.11E-05
24GO:0009955: adaxial/abaxial pattern specification2.82E-05
25GO:0006458: 'de novo' protein folding2.82E-05
26GO:1902626: assembly of large subunit precursor of preribosome6.86E-05
27GO:0002181: cytoplasmic translation6.86E-05
28GO:0008033: tRNA processing1.73E-04
29GO:0010162: seed dormancy process1.90E-04
30GO:0010197: polar nucleus fusion1.97E-04
31GO:0042274: ribosomal small subunit biogenesis2.41E-04
32GO:0080156: mitochondrial mRNA modification2.83E-04
33GO:0031167: rRNA methylation3.62E-04
34GO:0045040: protein import into mitochondrial outer membrane5.03E-04
35GO:0016070: RNA metabolic process5.03E-04
36GO:0009735: response to cytokinin5.24E-04
37GO:0030150: protein import into mitochondrial matrix6.19E-04
38GO:0042026: protein refolding6.66E-04
39GO:0000245: spliceosomal complex assembly6.66E-04
40GO:0016444: somatic cell DNA recombination6.66E-04
41GO:0006414: translational elongation6.70E-04
42GO:0006434: seryl-tRNA aminoacylation7.03E-04
43GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.03E-04
44GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.03E-04
45GO:0018002: N-terminal peptidyl-glutamic acid acetylation7.03E-04
46GO:0006407: rRNA export from nucleus7.03E-04
47GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process7.03E-04
48GO:0031120: snRNA pseudouridine synthesis7.03E-04
49GO:0006475: internal protein amino acid acetylation7.03E-04
50GO:0031118: rRNA pseudouridine synthesis7.03E-04
51GO:0015801: aromatic amino acid transport7.03E-04
52GO:0048453: sepal formation7.03E-04
53GO:0017198: N-terminal peptidyl-serine acetylation7.03E-04
54GO:0031060: regulation of histone methylation7.03E-04
55GO:0030490: maturation of SSU-rRNA7.03E-04
56GO:0061077: chaperone-mediated protein folding7.93E-04
57GO:0001510: RNA methylation1.28E-03
58GO:0048569: post-embryonic animal organ development1.52E-03
59GO:0043981: histone H4-K5 acetylation1.52E-03
60GO:0010198: synergid death1.52E-03
61GO:0015786: UDP-glucose transport1.52E-03
62GO:0045859: regulation of protein kinase activity1.52E-03
63GO:2000072: regulation of defense response to fungus, incompatible interaction1.52E-03
64GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine1.52E-03
65GO:0008283: cell proliferation1.65E-03
66GO:0045039: protein import into mitochondrial inner membrane2.50E-03
67GO:0010452: histone H3-K36 methylation2.50E-03
68GO:0006954: inflammatory response2.50E-03
69GO:1904278: positive regulation of wax biosynthetic process2.50E-03
70GO:0009150: purine ribonucleotide metabolic process2.50E-03
71GO:0015783: GDP-fucose transport2.50E-03
72GO:0034227: tRNA thio-modification2.50E-03
73GO:0010476: gibberellin mediated signaling pathway2.50E-03
74GO:0042256: mature ribosome assembly2.50E-03
75GO:0090506: axillary shoot meristem initiation2.50E-03
76GO:0010338: leaf formation2.50E-03
77GO:0006820: anion transport2.84E-03
78GO:0009793: embryo development ending in seed dormancy2.99E-03
79GO:0051085: chaperone mediated protein folding requiring cofactor3.64E-03
80GO:0006241: CTP biosynthetic process3.64E-03
81GO:0072334: UDP-galactose transmembrane transport3.64E-03
82GO:0006165: nucleoside diphosphate phosphorylation3.64E-03
83GO:0006228: UTP biosynthetic process3.64E-03
84GO:0006164: purine nucleotide biosynthetic process3.64E-03
85GO:0009855: determination of bilateral symmetry3.64E-03
86GO:0009558: embryo sac cellularization3.64E-03
87GO:0046513: ceramide biosynthetic process3.64E-03
88GO:0007004: telomere maintenance via telomerase3.64E-03
89GO:0070301: cellular response to hydrogen peroxide3.64E-03
90GO:0006183: GTP biosynthetic process4.92E-03
91GO:0042273: ribosomal large subunit biogenesis4.92E-03
92GO:2000032: regulation of secondary shoot formation4.92E-03
93GO:0009944: polarity specification of adaxial/abaxial axis5.08E-03
94GO:0046686: response to cadmium ion5.31E-03
95GO:0006334: nucleosome assembly6.18E-03
96GO:0019408: dolichol biosynthetic process6.33E-03
97GO:1902183: regulation of shoot apical meristem development6.33E-03
98GO:0007005: mitochondrion organization6.77E-03
99GO:0071215: cellular response to abscisic acid stimulus7.40E-03
100GO:0009294: DNA mediated transformation7.40E-03
101GO:0040007: growth7.40E-03
102GO:0000470: maturation of LSU-rRNA7.86E-03
103GO:0010358: leaf shaping7.86E-03
104GO:0016554: cytidine to uridine editing7.86E-03
105GO:0000741: karyogamy7.86E-03
106GO:0051568: histone H3-K4 methylation7.86E-03
107GO:0006413: translational initiation9.33E-03
108GO:0000413: protein peptidyl-prolyl isomerization9.46E-03
109GO:0000911: cytokinesis by cell plate formation9.51E-03
110GO:0000054: ribosomal subunit export from nucleus9.51E-03
111GO:0009648: photoperiodism9.51E-03
112GO:0009965: leaf morphogenesis9.65E-03
113GO:0080186: developmental vegetative growth1.13E-02
114GO:0009645: response to low light intensity stimulus1.13E-02
115GO:0035265: organ growth1.32E-02
116GO:0001522: pseudouridine synthesis1.32E-02
117GO:0050821: protein stabilization1.32E-02
118GO:0001558: regulation of cell growth1.51E-02
119GO:0030968: endoplasmic reticulum unfolded protein response1.51E-02
120GO:0043562: cellular response to nitrogen levels1.51E-02
121GO:0007338: single fertilization1.72E-02
122GO:0009245: lipid A biosynthetic process1.72E-02
123GO:0048507: meristem development1.72E-02
124GO:0006189: 'de novo' IMP biosynthetic process1.72E-02
125GO:0048589: developmental growth1.72E-02
126GO:0015780: nucleotide-sugar transport1.72E-02
127GO:0098656: anion transmembrane transport1.72E-02
128GO:0015031: protein transport1.83E-02
129GO:0009553: embryo sac development1.84E-02
130GO:0009651: response to salt stress1.93E-02
131GO:0042761: very long-chain fatty acid biosynthetic process1.94E-02
132GO:0009409: response to cold2.10E-02
133GO:0030422: production of siRNA involved in RNA interference2.16E-02
134GO:0016441: posttranscriptional gene silencing2.16E-02
135GO:0006913: nucleocytoplasmic transport2.40E-02
136GO:0015770: sucrose transport2.40E-02
137GO:0010015: root morphogenesis2.40E-02
138GO:0006790: sulfur compound metabolic process2.64E-02
139GO:0010102: lateral root morphogenesis2.90E-02
140GO:2000028: regulation of photoperiodism, flowering2.90E-02
141GO:0000724: double-strand break repair via homologous recombination2.92E-02
142GO:0048467: gynoecium development3.16E-02
143GO:0048440: carpel development3.16E-02
144GO:0009933: meristem structural organization3.16E-02
145GO:0006446: regulation of translational initiation3.16E-02
146GO:0006289: nucleotide-excision repair3.98E-02
147GO:0006487: protein N-linked glycosylation3.98E-02
148GO:0009644: response to high light intensity4.25E-02
149GO:0051302: regulation of cell division4.27E-02
150GO:0003333: amino acid transmembrane transport4.57E-02
151GO:0015992: proton transport4.57E-02
152GO:0051260: protein homooligomerization4.57E-02
153GO:0010431: seed maturation4.57E-02
154GO:0008380: RNA splicing4.71E-02
RankGO TermAdjusted P value
1GO:0034513: box H/ACA snoRNA binding0.00E+00
2GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity0.00E+00
3GO:1990259: histone-glutamine methyltransferase activity0.00E+00
4GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
5GO:0003735: structural constituent of ribosome6.01E-226
6GO:0003729: mRNA binding6.01E-38
7GO:0019843: rRNA binding6.17E-17
8GO:0003723: RNA binding5.37E-13
9GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity6.62E-07
10GO:0030515: snoRNA binding8.51E-07
11GO:0044183: protein binding involved in protein folding1.18E-05
12GO:0001056: RNA polymerase III activity1.61E-05
13GO:0005078: MAP-kinase scaffold activity2.11E-05
14GO:0008649: rRNA methyltransferase activity6.86E-05
15GO:0008097: 5S rRNA binding1.42E-04
16GO:0001055: RNA polymerase II activity1.51E-04
17GO:0003746: translation elongation factor activity1.88E-04
18GO:0001054: RNA polymerase I activity2.35E-04
19GO:0003899: DNA-directed 5'-3' RNA polymerase activity5.42E-04
20GO:0004407: histone deacetylase activity6.19E-04
21GO:0000824: inositol tetrakisphosphate 3-kinase activity7.03E-04
22GO:1990189: peptide-serine-N-acetyltransferase activity7.03E-04
23GO:0004828: serine-tRNA ligase activity7.03E-04
24GO:0004679: AMP-activated protein kinase activity7.03E-04
25GO:0047326: inositol tetrakisphosphate 5-kinase activity7.03E-04
26GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity7.03E-04
27GO:0048037: cofactor binding7.03E-04
28GO:1990190: peptide-glutamate-N-acetyltransferase activity7.03E-04
29GO:0005080: protein kinase C binding7.03E-04
30GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity7.03E-04
31GO:0035614: snRNA stem-loop binding7.03E-04
32GO:0051082: unfolded protein binding1.02E-03
33GO:0015288: porin activity1.06E-03
34GO:0008308: voltage-gated anion channel activity1.28E-03
35GO:0015173: aromatic amino acid transmembrane transporter activity1.52E-03
36GO:0070034: telomerase RNA binding1.52E-03
37GO:0004750: ribulose-phosphate 3-epimerase activity1.52E-03
38GO:0004775: succinate-CoA ligase (ADP-forming) activity1.52E-03
39GO:0043141: ATP-dependent 5'-3' DNA helicase activity1.52E-03
40GO:0035241: protein-arginine omega-N monomethyltransferase activity1.52E-03
41GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity1.52E-03
42GO:0030619: U1 snRNA binding1.52E-03
43GO:0004776: succinate-CoA ligase (GDP-forming) activity1.52E-03
44GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity1.52E-03
45GO:0050291: sphingosine N-acyltransferase activity1.52E-03
46GO:0000166: nucleotide binding1.99E-03
47GO:0032947: protein complex scaffold2.50E-03
48GO:0070181: small ribosomal subunit rRNA binding2.50E-03
49GO:0005457: GDP-fucose transmembrane transporter activity2.50E-03
50GO:0008469: histone-arginine N-methyltransferase activity2.50E-03
51GO:0015462: ATPase-coupled protein transmembrane transporter activity2.50E-03
52GO:0015266: protein channel activity3.23E-03
53GO:0005460: UDP-glucose transmembrane transporter activity3.64E-03
54GO:0004550: nucleoside diphosphate kinase activity3.64E-03
55GO:0047627: adenylylsulfatase activity3.64E-03
56GO:0070628: proteasome binding4.92E-03
57GO:0005459: UDP-galactose transmembrane transporter activity6.33E-03
58GO:0045547: dehydrodolichyl diphosphate synthase activity6.33E-03
59GO:0005275: amine transmembrane transporter activity6.33E-03
60GO:0042393: histone binding7.09E-03
61GO:0031593: polyubiquitin binding7.86E-03
62GO:0031177: phosphopantetheine binding7.86E-03
63GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity7.86E-03
64GO:0000035: acyl binding9.51E-03
65GO:0019887: protein kinase regulator activity9.51E-03
66GO:0051920: peroxiredoxin activity9.51E-03
67GO:0005338: nucleotide-sugar transmembrane transporter activity1.13E-02
68GO:0008235: metalloexopeptidase activity1.13E-02
69GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.32E-02
70GO:0043022: ribosome binding1.32E-02
71GO:0016209: antioxidant activity1.32E-02
72GO:0008515: sucrose transmembrane transporter activity2.40E-02
73GO:0000049: tRNA binding2.64E-02
74GO:0050897: cobalt ion binding2.78E-02
75GO:0031072: heat shock protein binding2.90E-02
76GO:0005507: copper ion binding3.18E-02
77GO:0051119: sugar transmembrane transporter activity3.43E-02
78GO:0043130: ubiquitin binding3.98E-02
79GO:0051087: chaperone binding4.27E-02
80GO:0036459: thiol-dependent ubiquitinyl hydrolase activity4.57E-02
81GO:0004298: threonine-type endopeptidase activity4.57E-02
82GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.58E-02
83GO:0003743: translation initiation factor activity4.59E-02
RankGO TermAdjusted P value
1GO:0090661: box H/ACA telomerase RNP complex0.00E+00
2GO:0042719: mitochondrial intermembrane space protein transporter complex0.00E+00
3GO:0072589: box H/ACA scaRNP complex0.00E+00
4GO:0005832: chaperonin-containing T-complex0.00E+00
5GO:0043186: P granule0.00E+00
6GO:0005840: ribosome8.40E-159
7GO:0022626: cytosolic ribosome1.57E-132
8GO:0022625: cytosolic large ribosomal subunit1.06E-128
9GO:0022627: cytosolic small ribosomal subunit2.33E-93
10GO:0005730: nucleolus1.93E-57
11GO:0005829: cytosol2.75E-49
12GO:0005737: cytoplasm2.77E-40
13GO:0009506: plasmodesma5.67E-27
14GO:0015934: large ribosomal subunit1.21E-23
15GO:0005774: vacuolar membrane3.57E-18
16GO:0016020: membrane1.83E-13
17GO:0015935: small ribosomal subunit1.37E-12
18GO:0005773: vacuole1.81E-09
19GO:0005732: small nucleolar ribonucleoprotein complex1.83E-09
20GO:0005618: cell wall1.03E-08
21GO:0005742: mitochondrial outer membrane translocase complex3.80E-08
22GO:0009507: chloroplast2.79E-06
23GO:0005666: DNA-directed RNA polymerase III complex5.88E-06
24GO:0015030: Cajal body5.88E-06
25GO:0005665: DNA-directed RNA polymerase II, core complex1.61E-05
26GO:0031428: box C/D snoRNP complex1.69E-05
27GO:0005681: spliceosomal complex1.75E-05
28GO:0019013: viral nucleocapsid2.13E-05
29GO:0005758: mitochondrial intermembrane space5.41E-05
30GO:0034719: SMN-Sm protein complex6.86E-05
31GO:0005736: DNA-directed RNA polymerase I complex1.17E-04
32GO:0005685: U1 snRNP1.17E-04
33GO:0071011: precatalytic spliceosome1.51E-04
34GO:0000418: DNA-directed RNA polymerase IV complex1.90E-04
35GO:0005886: plasma membrane1.97E-04
36GO:0071013: catalytic step 2 spliceosome2.35E-04
37GO:0005682: U5 snRNP2.41E-04
38GO:0032040: small-subunit processome2.85E-04
39GO:0005687: U4 snRNP3.62E-04
40GO:0097526: spliceosomal tri-snRNP complex3.62E-04
41GO:0000419: DNA-directed RNA polymerase V complex5.40E-04
42GO:0005689: U12-type spliceosomal complex6.66E-04
43GO:0030686: 90S preribosome7.03E-04
44GO:0005741: mitochondrial outer membrane7.93E-04
45GO:0005834: heterotrimeric G-protein complex8.22E-04
46GO:0005688: U6 snRNP1.06E-03
47GO:0046540: U4/U6 x U5 tri-snRNP complex1.28E-03
48GO:0046930: pore complex1.28E-03
49GO:0005743: mitochondrial inner membrane1.40E-03
50GO:0071010: prespliceosome1.52E-03
51GO:0031415: NatA complex1.52E-03
52GO:0005686: U2 snRNP2.14E-03
53GO:0005852: eukaryotic translation initiation factor 3 complex2.47E-03
54GO:0034715: pICln-Sm protein complex2.50E-03
55GO:0005853: eukaryotic translation elongation factor 1 complex2.50E-03
56GO:0005747: mitochondrial respiratory chain complex I3.56E-03
57GO:1990726: Lsm1-7-Pat1 complex3.64E-03
58GO:0031429: box H/ACA snoRNP complex3.64E-03
59GO:0016593: Cdc73/Paf1 complex4.92E-03
60GO:0000243: commitment complex7.86E-03
61GO:0005744: mitochondrial inner membrane presequence translocase complex8.06E-03
62GO:0016272: prefoldin complex9.51E-03
63GO:0071004: U2-type prespliceosome1.32E-02
64GO:0009536: plastid1.68E-02
65GO:0030529: intracellular ribonucleoprotein complex1.84E-02
66GO:0016604: nuclear body1.94E-02
67GO:0005622: intracellular1.97E-02
68GO:0048471: perinuclear region of cytoplasm2.40E-02
69GO:0031307: integral component of mitochondrial outer membrane2.64E-02
70GO:0000786: nucleosome2.92E-02
71GO:0005759: mitochondrial matrix3.37E-02
72GO:0070469: respiratory chain4.27E-02
73GO:0005839: proteasome core complex4.57E-02
74GO:0005739: mitochondrion4.73E-02
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Gene type



Gene DE type