Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G58620

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome0.00E+00
2GO:0010412: mannan metabolic process0.00E+00
3GO:0032953: regulation of (1->3)-beta-D-glucan biosynthetic process0.00E+00
4GO:0019593: mannitol biosynthetic process0.00E+00
5GO:0071289: cellular response to nickel ion0.00E+00
6GO:0006862: nucleotide transport0.00E+00
7GO:0080050: regulation of seed development0.00E+00
8GO:0042353: fucose biosynthetic process0.00E+00
9GO:0035024: negative regulation of Rho protein signal transduction0.00E+00
10GO:0010046: response to mycotoxin0.00E+00
11GO:0010200: response to chitin8.05E-09
12GO:0006468: protein phosphorylation4.36E-06
13GO:0042344: indole glucosinolate catabolic process1.22E-05
14GO:2000280: regulation of root development1.68E-05
15GO:0052544: defense response by callose deposition in cell wall2.83E-05
16GO:0009611: response to wounding4.66E-05
17GO:0009863: salicylic acid mediated signaling pathway8.91E-05
18GO:0009873: ethylene-activated signaling pathway1.04E-04
19GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway2.07E-04
20GO:0006955: immune response2.07E-04
21GO:2000070: regulation of response to water deprivation2.62E-04
22GO:0009609: response to symbiotic bacterium2.72E-04
23GO:0046938: phytochelatin biosynthetic process2.72E-04
24GO:0051180: vitamin transport2.72E-04
25GO:0030974: thiamine pyrophosphate transport2.72E-04
26GO:0009865: pollen tube adhesion2.72E-04
27GO:0006680: glucosylceramide catabolic process2.72E-04
28GO:0009624: response to nematode5.13E-04
29GO:0010507: negative regulation of autophagy5.99E-04
30GO:0031407: oxylipin metabolic process5.99E-04
31GO:0042754: negative regulation of circadian rhythm5.99E-04
32GO:0010289: homogalacturonan biosynthetic process5.99E-04
33GO:2000030: regulation of response to red or far red light5.99E-04
34GO:0006898: receptor-mediated endocytosis5.99E-04
35GO:0015893: drug transport5.99E-04
36GO:0052542: defense response by callose deposition5.99E-04
37GO:0015786: UDP-glucose transport5.99E-04
38GO:0009737: response to abscisic acid7.00E-04
39GO:0045793: positive regulation of cell size9.72E-04
40GO:0090630: activation of GTPase activity9.72E-04
41GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid9.72E-04
42GO:0015783: GDP-fucose transport9.72E-04
43GO:0010325: raffinose family oligosaccharide biosynthetic process9.72E-04
44GO:0080168: abscisic acid transport9.72E-04
45GO:0016045: detection of bacterium9.72E-04
46GO:0010359: regulation of anion channel activity9.72E-04
47GO:0070588: calcium ion transmembrane transport1.01E-03
48GO:0009969: xyloglucan biosynthetic process1.01E-03
49GO:2000377: regulation of reactive oxygen species metabolic process1.24E-03
50GO:0009695: jasmonic acid biosynthetic process1.37E-03
51GO:0072334: UDP-galactose transmembrane transport1.39E-03
52GO:0030100: regulation of endocytosis1.39E-03
53GO:0033014: tetrapyrrole biosynthetic process1.39E-03
54GO:0015700: arsenite transport1.39E-03
55GO:0007166: cell surface receptor signaling pathway1.44E-03
56GO:0009269: response to desiccation1.50E-03
57GO:0031408: oxylipin biosynthetic process1.50E-03
58GO:0010468: regulation of gene expression1.53E-03
59GO:0042538: hyperosmotic salinity response1.80E-03
60GO:0009694: jasmonic acid metabolic process1.86E-03
61GO:0046355: mannan catabolic process1.86E-03
62GO:0006536: glutamate metabolic process1.86E-03
63GO:1902347: response to strigolactone1.86E-03
64GO:0042335: cuticle development2.27E-03
65GO:0048497: maintenance of floral organ identity2.37E-03
66GO:0006665: sphingolipid metabolic process2.37E-03
67GO:0032957: inositol trisphosphate metabolic process2.37E-03
68GO:0009247: glycolipid biosynthetic process2.37E-03
69GO:0048359: mucilage metabolic process involved in seed coat development2.37E-03
70GO:0006873: cellular ion homeostasis2.37E-03
71GO:0045489: pectin biosynthetic process2.45E-03
72GO:0010256: endomembrane system organization2.93E-03
73GO:0047484: regulation of response to osmotic stress2.93E-03
74GO:0010337: regulation of salicylic acid metabolic process2.93E-03
75GO:0042545: cell wall modification2.97E-03
76GO:0010193: response to ozone3.02E-03
77GO:0006952: defense response3.25E-03
78GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.33E-03
79GO:0080113: regulation of seed growth3.52E-03
80GO:0009861: jasmonic acid and ethylene-dependent systemic resistance3.52E-03
81GO:0010555: response to mannitol3.52E-03
82GO:1901001: negative regulation of response to salt stress3.52E-03
83GO:2000033: regulation of seed dormancy process3.52E-03
84GO:1902074: response to salt4.15E-03
85GO:0030497: fatty acid elongation4.15E-03
86GO:0007155: cell adhesion4.82E-03
87GO:0009938: negative regulation of gibberellic acid mediated signaling pathway4.82E-03
88GO:1900150: regulation of defense response to fungus4.82E-03
89GO:0019375: galactolipid biosynthetic process4.82E-03
90GO:0009699: phenylpropanoid biosynthetic process5.52E-03
91GO:0009827: plant-type cell wall modification5.52E-03
92GO:0045490: pectin catabolic process6.18E-03
93GO:0007623: circadian rhythm6.18E-03
94GO:0010150: leaf senescence6.18E-03
95GO:0015780: nucleotide-sugar transport6.25E-03
96GO:0098656: anion transmembrane transport6.25E-03
97GO:0046685: response to arsenic-containing substance6.25E-03
98GO:0006783: heme biosynthetic process6.25E-03
99GO:0006811: ion transport6.27E-03
100GO:0006779: porphyrin-containing compound biosynthetic process7.03E-03
101GO:0010018: far-red light signaling pathway7.03E-03
102GO:0048268: clathrin coat assembly7.03E-03
103GO:0007346: regulation of mitotic cell cycle7.03E-03
104GO:0006355: regulation of transcription, DNA-templated7.63E-03
105GO:0006782: protoporphyrinogen IX biosynthetic process7.82E-03
106GO:0055062: phosphate ion homeostasis7.82E-03
107GO:0019538: protein metabolic process7.82E-03
108GO:0006839: mitochondrial transport8.22E-03
109GO:0016310: phosphorylation8.22E-03
110GO:0006351: transcription, DNA-templated8.35E-03
111GO:0006897: endocytosis8.57E-03
112GO:0010015: root morphogenesis8.66E-03
113GO:0000038: very long-chain fatty acid metabolic process8.66E-03
114GO:0009682: induced systemic resistance8.66E-03
115GO:0018119: peptidyl-cysteine S-nitrosylation8.66E-03
116GO:0009640: photomorphogenesis9.30E-03
117GO:0071365: cellular response to auxin stimulus9.52E-03
118GO:0010105: negative regulation of ethylene-activated signaling pathway9.52E-03
119GO:0018107: peptidyl-threonine phosphorylation1.04E-02
120GO:0005986: sucrose biosynthetic process1.04E-02
121GO:0048467: gynoecium development1.13E-02
122GO:0006970: response to osmotic stress1.19E-02
123GO:0071732: cellular response to nitric oxide1.23E-02
124GO:0009585: red, far-red light phototransduction1.26E-02
125GO:0010224: response to UV-B1.30E-02
126GO:0009833: plant-type primary cell wall biogenesis1.33E-02
127GO:0010025: wax biosynthetic process1.33E-02
128GO:0042753: positive regulation of circadian rhythm1.33E-02
129GO:0010187: negative regulation of seed germination1.43E-02
130GO:0016998: cell wall macromolecule catabolic process1.64E-02
131GO:0009620: response to fungus1.64E-02
132GO:0051321: meiotic cell cycle1.64E-02
133GO:0031348: negative regulation of defense response1.75E-02
134GO:0030245: cellulose catabolic process1.75E-02
135GO:0010017: red or far-red light signaling pathway1.75E-02
136GO:0030433: ubiquitin-dependent ERAD pathway1.75E-02
137GO:0071369: cellular response to ethylene stimulus1.86E-02
138GO:0001944: vasculature development1.86E-02
139GO:0010089: xylem development1.97E-02
140GO:0010584: pollen exine formation1.97E-02
141GO:0048443: stamen development1.97E-02
142GO:0006817: phosphate ion transport1.97E-02
143GO:0019722: calcium-mediated signaling1.97E-02
144GO:0009409: response to cold2.13E-02
145GO:0000271: polysaccharide biosynthetic process2.21E-02
146GO:0009751: response to salicylic acid2.28E-02
147GO:0048868: pollen tube development2.33E-02
148GO:0009960: endosperm development2.33E-02
149GO:0048544: recognition of pollen2.45E-02
150GO:0009753: response to jasmonic acid2.53E-02
151GO:0005975: carbohydrate metabolic process2.58E-02
152GO:0009749: response to glucose2.58E-02
153GO:0009790: embryo development2.62E-02
154GO:0000302: response to reactive oxygen species2.71E-02
155GO:0006633: fatty acid biosynthetic process2.82E-02
156GO:1901657: glycosyl compound metabolic process2.97E-02
157GO:0071281: cellular response to iron ion2.97E-02
158GO:0019760: glucosinolate metabolic process3.10E-02
159GO:0009639: response to red or far red light3.10E-02
160GO:0007267: cell-cell signaling3.24E-02
161GO:0009739: response to gibberellin3.47E-02
162GO:0010027: thylakoid membrane organization3.52E-02
163GO:0006470: protein dephosphorylation3.55E-02
164GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.66E-02
165GO:0010029: regulation of seed germination3.66E-02
166GO:0009617: response to bacterium3.70E-02
167GO:0009414: response to water deprivation3.74E-02
168GO:0009627: systemic acquired resistance3.80E-02
169GO:0071555: cell wall organization3.88E-02
170GO:0042742: defense response to bacterium3.88E-02
171GO:0006979: response to oxidative stress3.92E-02
172GO:0015995: chlorophyll biosynthetic process3.95E-02
173GO:0010411: xyloglucan metabolic process3.95E-02
174GO:0008219: cell death4.25E-02
175GO:0009817: defense response to fungus, incompatible interaction4.25E-02
176GO:0048481: plant ovule development4.25E-02
177GO:0030244: cellulose biosynthetic process4.25E-02
178GO:0048767: root hair elongation4.40E-02
179GO:0009834: plant-type secondary cell wall biogenesis4.55E-02
180GO:0010119: regulation of stomatal movement4.71E-02
181GO:0006865: amino acid transport4.86E-02
RankGO TermAdjusted P value
1GO:0080123: jasmonate-amino synthetase activity0.00E+00
2GO:0032442: phenylcoumaran benzylic ether reductase activity0.00E+00
3GO:0015215: nucleotide transmembrane transporter activity0.00E+00
4GO:0070566: adenylyltransferase activity0.00E+00
5GO:0017048: Rho GTPase binding0.00E+00
6GO:0016629: 12-oxophytodienoate reductase activity3.41E-06
7GO:0009922: fatty acid elongase activity7.90E-05
8GO:0016301: kinase activity1.05E-04
9GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.77E-04
10GO:0090422: thiamine pyrophosphate transporter activity2.72E-04
11GO:0046870: cadmium ion binding2.72E-04
12GO:0015446: ATPase-coupled arsenite transmembrane transporter activity2.72E-04
13GO:0090440: abscisic acid transporter activity2.72E-04
14GO:0004348: glucosylceramidase activity2.72E-04
15GO:0071992: phytochelatin transmembrane transporter activity2.72E-04
16GO:0004674: protein serine/threonine kinase activity3.29E-04
17GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.53E-04
18GO:0004103: choline kinase activity5.99E-04
19GO:0008883: glutamyl-tRNA reductase activity5.99E-04
20GO:0001047: core promoter binding5.99E-04
21GO:0017040: ceramidase activity5.99E-04
22GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity5.99E-04
23GO:0005457: GDP-fucose transmembrane transporter activity9.72E-04
24GO:0047325: inositol tetrakisphosphate 1-kinase activity9.72E-04
25GO:0047274: galactinol-sucrose galactosyltransferase activity9.72E-04
26GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity9.72E-04
27GO:0046423: allene-oxide cyclase activity9.72E-04
28GO:0004383: guanylate cyclase activity9.72E-04
29GO:0043565: sequence-specific DNA binding1.01E-03
30GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.12E-03
31GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.12E-03
32GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.12E-03
33GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity1.39E-03
34GO:0004351: glutamate decarboxylase activity1.39E-03
35GO:0001653: peptide receptor activity1.39E-03
36GO:0033843: xyloglucan 6-xylosyltransferase activity1.39E-03
37GO:0016756: glutathione gamma-glutamylcysteinyltransferase activity1.39E-03
38GO:0035250: UDP-galactosyltransferase activity1.39E-03
39GO:0003883: CTP synthase activity1.39E-03
40GO:0005460: UDP-glucose transmembrane transporter activity1.39E-03
41GO:0016985: mannan endo-1,4-beta-mannosidase activity1.86E-03
42GO:0008514: organic anion transmembrane transporter activity1.94E-03
43GO:0005516: calmodulin binding2.18E-03
44GO:0005524: ATP binding2.22E-03
45GO:0045330: aspartyl esterase activity2.24E-03
46GO:0070696: transmembrane receptor protein serine/threonine kinase binding2.37E-03
47GO:0005459: UDP-galactose transmembrane transporter activity2.37E-03
48GO:0010181: FMN binding2.63E-03
49GO:0030599: pectinesterase activity2.86E-03
50GO:0019137: thioglucosidase activity2.93E-03
51GO:0051020: GTPase binding3.52E-03
52GO:0016621: cinnamoyl-CoA reductase activity4.15E-03
53GO:0019899: enzyme binding4.15E-03
54GO:0102483: scopolin beta-glucosidase activity5.13E-03
55GO:0008308: voltage-gated anion channel activity5.52E-03
56GO:0015297: antiporter activity5.83E-03
57GO:0000989: transcription factor activity, transcription factor binding6.25E-03
58GO:0003700: transcription factor activity, sequence-specific DNA binding7.55E-03
59GO:0005545: 1-phosphatidylinositol binding7.82E-03
60GO:0004713: protein tyrosine kinase activity7.82E-03
61GO:0008422: beta-glucosidase activity7.87E-03
62GO:0004672: protein kinase activity8.31E-03
63GO:0005262: calcium channel activity1.04E-02
64GO:0005388: calcium-transporting ATPase activity1.04E-02
65GO:0005315: inorganic phosphate transmembrane transporter activity1.04E-02
66GO:0008083: growth factor activity1.13E-02
67GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.13E-02
68GO:0044212: transcription regulatory region DNA binding1.27E-02
69GO:0031625: ubiquitin protein ligase binding1.39E-02
70GO:0004857: enzyme inhibitor activity1.43E-02
71GO:0051087: chaperone binding1.53E-02
72GO:0004707: MAP kinase activity1.64E-02
73GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.75E-02
74GO:0018024: histone-lysine N-methyltransferase activity2.09E-02
75GO:0030246: carbohydrate binding2.13E-02
76GO:0016758: transferase activity, transferring hexosyl groups2.19E-02
77GO:0030276: clathrin binding2.33E-02
78GO:0050662: coenzyme binding2.45E-02
79GO:0016722: oxidoreductase activity, oxidizing metal ions3.24E-02
80GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.24E-02
81GO:0016413: O-acetyltransferase activity3.38E-02
82GO:0008757: S-adenosylmethionine-dependent methyltransferase activity4.10E-02
83GO:0005096: GTPase activator activity4.40E-02
84GO:0015238: drug transmembrane transporter activity4.40E-02
85GO:0003824: catalytic activity4.43E-02
86GO:0004693: cyclin-dependent protein serine/threonine kinase activity4.55E-02
RankGO TermAdjusted P value
1GO:0005768: endosome5.41E-05
2GO:0070382: exocytic vesicle2.72E-04
3GO:0005802: trans-Golgi network7.00E-04
4GO:0005886: plasma membrane1.16E-03
5GO:0045177: apical part of cell1.39E-03
6GO:0046658: anchored component of plasma membrane1.80E-03
7GO:0030173: integral component of Golgi membrane3.52E-03
8GO:0016604: nuclear body7.03E-03
9GO:0005794: Golgi apparatus8.47E-03
10GO:0031902: late endosome membrane8.57E-03
11GO:0005618: cell wall9.00E-03
12GO:0005938: cell cortex1.04E-02
13GO:0010008: endosome membrane1.54E-02
14GO:0016607: nuclear speck1.54E-02
15GO:0005905: clathrin-coated pit1.64E-02
16GO:0009706: chloroplast inner membrane1.79E-02
17GO:0009536: plastid1.80E-02
18GO:0009505: plant-type cell wall1.87E-02
19GO:0030136: clathrin-coated vesicle2.09E-02
20GO:0005743: mitochondrial inner membrane2.12E-02
21GO:0000139: Golgi membrane2.13E-02
22GO:0005770: late endosome2.33E-02
23GO:0005694: chromosome2.84E-02
24GO:0032580: Golgi cisterna membrane3.10E-02
25GO:0009506: plasmodesma3.19E-02
26GO:0016021: integral component of membrane4.49E-02
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Gene type



Gene DE type