co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G58510

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043462: regulation of ATPase activity	0.00E+00
2	GO:0006457: protein folding	2.26E-06
3	GO:0009408: response to heat	2.65E-06
4	GO:0051131: chaperone-mediated protein complex assembly	2.80E-06
5	GO:0009699: phenylpropanoid biosynthetic process	4.53E-05
6	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	7.39E-05
7	GO:1902182: shoot apical meristem development	7.39E-05
8	GO:0051014: actin filament severing	7.39E-05
9	GO:0071277: cellular response to calcium ion	7.39E-05
10	GO:0003400: regulation of COPII vesicle coating	7.39E-05
11	GO:0099636: cytoplasmic streaming	7.39E-05
12	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	7.39E-05
13	GO:0009073: aromatic amino acid family biosynthetic process	9.76E-05
14	GO:0000266: mitochondrial fission	1.14E-04
15	GO:0009805: coumarin biosynthetic process	1.77E-04
16	GO:0051262: protein tetramerization	1.77E-04
17	GO:0010372: positive regulation of gibberellin biosynthetic process	1.77E-04
18	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	1.77E-04
19	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	2.99E-04
20	GO:0052546: cell wall pectin metabolic process	2.99E-04
21	GO:0070475: rRNA base methylation	2.99E-04
22	GO:0010165: response to X-ray	2.99E-04
23	GO:0042780: tRNA 3'-end processing	2.99E-04
24	GO:0006065: UDP-glucuronate biosynthetic process	2.99E-04
25	GO:0009306: protein secretion	3.42E-04
26	GO:0045227: capsule polysaccharide biosynthetic process	5.75E-04
27	GO:0051764: actin crosslink formation	5.75E-04
28	GO:0033358: UDP-L-arabinose biosynthetic process	5.75E-04
29	GO:1902347: response to strigolactone	5.75E-04
30	GO:0080037: negative regulation of cytokinin-activated signaling pathway	5.75E-04
31	GO:0016926: protein desumoylation	7.29E-04
32	GO:2000762: regulation of phenylpropanoid metabolic process	7.29E-04
33	GO:0009911: positive regulation of flower development	7.56E-04
34	GO:0000470: maturation of LSU-rRNA	8.91E-04
35	GO:0033365: protein localization to organelle	8.91E-04
36	GO:0006810: transport	1.02E-03
37	GO:0015977: carbon fixation	1.06E-03
38	GO:0009423: chorismate biosynthetic process	1.06E-03
39	GO:0006744: ubiquinone biosynthetic process	1.24E-03
40	GO:0051693: actin filament capping	1.24E-03
41	GO:0006099: tricarboxylic acid cycle	1.27E-03
42	GO:0048366: leaf development	1.34E-03
43	GO:0006839: mitochondrial transport	1.38E-03
44	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.43E-03
45	GO:0030162: regulation of proteolysis	1.43E-03
46	GO:0006402: mRNA catabolic process	1.43E-03
47	GO:0006605: protein targeting	1.43E-03
48	GO:0050821: protein stabilization	1.43E-03
49	GO:0009808: lignin metabolic process	1.63E-03
50	GO:0007338: single fertilization	1.83E-03
51	GO:0007062: sister chromatid cohesion	1.83E-03
52	GO:0090332: stomatal closure	2.05E-03
53	GO:0030042: actin filament depolymerization	2.05E-03
54	GO:0008202: steroid metabolic process	2.05E-03
55	GO:0010215: cellulose microfibril organization	2.28E-03
56	GO:0006896: Golgi to vacuole transport	2.28E-03
57	GO:0019538: protein metabolic process	2.28E-03
58	GO:0009909: regulation of flower development	2.30E-03
59	GO:0010015: root morphogenesis	2.51E-03
60	GO:0009698: phenylpropanoid metabolic process	2.51E-03
61	GO:0006913: nucleocytoplasmic transport	2.51E-03
62	GO:0015706: nitrate transport	2.75E-03
63	GO:0006302: double-strand break repair	3.25E-03
64	GO:0034605: cellular response to heat	3.25E-03
65	GO:0007015: actin filament organization	3.25E-03
66	GO:0006446: regulation of translational initiation	3.25E-03
67	GO:0009225: nucleotide-sugar metabolic process	3.51E-03
68	GO:0010167: response to nitrate	3.51E-03
69	GO:0090351: seedling development	3.51E-03
70	GO:0009845: seed germination	3.98E-03
71	GO:0007010: cytoskeleton organization	4.06E-03
72	GO:0010187: negative regulation of seed germination	4.06E-03
73	GO:0080147: root hair cell development	4.06E-03
74	GO:0051017: actin filament bundle assembly	4.06E-03
75	GO:0061077: chaperone-mediated protein folding	4.63E-03
76	GO:0006413: translational initiation	4.72E-03
77	GO:0016036: cellular response to phosphate starvation	4.72E-03
78	GO:0006012: galactose metabolic process	5.23E-03
79	GO:0040007: growth	5.23E-03
80	GO:0006817: phosphate ion transport	5.54E-03
81	GO:0006342: chromatin silencing	6.51E-03
82	GO:0048868: pollen tube development	6.51E-03
83	GO:0007059: chromosome segregation	6.84E-03
84	GO:0032502: developmental process	7.89E-03
85	GO:0031047: gene silencing by RNA	7.89E-03
86	GO:0009567: double fertilization forming a zygote and endosperm	8.61E-03
87	GO:0010286: heat acclimation	8.98E-03
88	GO:0016579: protein deubiquitination	9.36E-03
89	GO:0080167: response to karrikin	9.71E-03
90	GO:0009615: response to virus	9.74E-03
91	GO:0009816: defense response to bacterium, incompatible interaction	1.01E-02
92	GO:0042128: nitrate assimilation	1.05E-02
93	GO:0006888: ER to Golgi vesicle-mediated transport	1.09E-02
94	GO:0048573: photoperiodism, flowering	1.09E-02
95	GO:0016049: cell growth	1.13E-02
96	GO:0048767: root hair elongation	1.22E-02
97	GO:0009813: flavonoid biosynthetic process	1.22E-02
98	GO:0000724: double-strand break repair via homologous recombination	1.34E-02
99	GO:0045087: innate immune response	1.39E-02
100	GO:0008283: cell proliferation	1.66E-02
101	GO:0009636: response to toxic substance	1.80E-02
102	GO:0009965: leaf morphogenesis	1.80E-02
103	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.90E-02
104	GO:0009809: lignin biosynthetic process	2.05E-02
105	GO:0006364: rRNA processing	2.05E-02
106	GO:0046686: response to cadmium ion	2.07E-02
107	GO:0006417: regulation of translation	2.21E-02
108	GO:0009611: response to wounding	2.61E-02
109	GO:0006396: RNA processing	2.69E-02
110	GO:0009742: brassinosteroid mediated signaling pathway	2.75E-02
111	GO:0009793: embryo development ending in seed dormancy	3.39E-02
112	GO:0007623: circadian rhythm	3.89E-02
113	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	4.22E-02
114	GO:0009617: response to bacterium	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0004164: diphthine synthase activity	0.00E+00
2	GO:0050220: prostaglandin-E synthase activity	0.00E+00
3	GO:0016710: trans-cinnamate 4-monooxygenase activity	0.00E+00
4	GO:0004107: chorismate synthase activity	0.00E+00
5	GO:0046409: p-coumarate 3-hydroxylase activity	0.00E+00
6	GO:0051082: unfolded protein binding	2.08E-05
7	GO:0005090: Sar guanyl-nucleotide exchange factor activity	7.39E-05
8	GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity	7.39E-05
9	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	7.39E-05
10	GO:0031072: heat shock protein binding	1.31E-04
11	GO:0032934: sterol binding	1.77E-04
12	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	1.77E-04
13	GO:0050736: O-malonyltransferase activity	1.77E-04
14	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	1.77E-04
15	GO:0042781: 3'-tRNA processing endoribonuclease activity	2.99E-04
16	GO:0008964: phosphoenolpyruvate carboxylase activity	2.99E-04
17	GO:0003979: UDP-glucose 6-dehydrogenase activity	2.99E-04
18	GO:0050373: UDP-arabinose 4-epimerase activity	5.75E-04
19	GO:0016929: SUMO-specific protease activity	7.29E-04
20	GO:0003729: mRNA binding	1.05E-03
21	GO:0051020: GTPase binding	1.06E-03
22	GO:0004012: phospholipid-translocating ATPase activity	1.06E-03
23	GO:0003978: UDP-glucose 4-epimerase activity	1.06E-03
24	GO:0004656: procollagen-proline 4-dioxygenase activity	1.06E-03
25	GO:0004525: ribonuclease III activity	1.43E-03
26	GO:0008142: oxysterol binding	1.63E-03
27	GO:0015112: nitrate transmembrane transporter activity	2.05E-03
28	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.00E-03
29	GO:0004022: alcohol dehydrogenase (NAD) activity	3.00E-03
30	GO:0004175: endopeptidase activity	3.25E-03
31	GO:0031418: L-ascorbic acid binding	4.06E-03
32	GO:0043130: ubiquitin binding	4.06E-03
33	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	4.63E-03
34	GO:0000166: nucleotide binding	4.81E-03
35	GO:0003743: translation initiation factor activity	5.91E-03
36	GO:0003723: RNA binding	6.03E-03
37	GO:0005524: ATP binding	6.34E-03
38	GO:0042802: identical protein binding	6.43E-03
39	GO:0001085: RNA polymerase II transcription factor binding	6.51E-03
40	GO:0010181: FMN binding	6.84E-03
41	GO:0004843: thiol-dependent ubiquitin-specific protease activity	7.53E-03
42	GO:0004518: nuclease activity	7.89E-03
43	GO:0051015: actin filament binding	8.25E-03
44	GO:0004721: phosphoprotein phosphatase activity	1.09E-02
45	GO:0005506: iron ion binding	1.16E-02
46	GO:0005096: GTPase activator activity	1.22E-02
47	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.30E-02
48	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.39E-02
49	GO:0005515: protein binding	1.50E-02
50	GO:0042393: histone binding	1.52E-02
51	GO:0005198: structural molecule activity	1.80E-02
52	GO:0051287: NAD binding	1.90E-02
53	GO:0031625: ubiquitin protein ligase binding	2.21E-02
54	GO:0008234: cysteine-type peptidase activity	2.21E-02
55	GO:0016887: ATPase activity	2.23E-02
56	GO:0003779: actin binding	2.58E-02
57	GO:0015035: protein disulfide oxidoreductase activity	2.69E-02
58	GO:0016746: transferase activity, transferring acyl groups	2.69E-02
59	GO:0016740: transferase activity	3.11E-02
60	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.39E-02
61	GO:0008017: microtubule binding	4.02E-02
62	GO:0005525: GTP binding	4.19E-02

Rank	GO Term	Adjusted P value
1	GO:0005829: cytosol	3.22E-07
2	GO:0045252: oxoglutarate dehydrogenase complex	7.39E-05
3	GO:0016442: RISC complex	7.39E-05
4	GO:0030688: preribosome, small subunit precursor	7.39E-05
5	GO:0005783: endoplasmic reticulum	1.02E-04
6	GO:0005737: cytoplasm	3.55E-04
7	GO:0005886: plasma membrane	4.87E-04
8	GO:0030915: Smc5-Smc6 complex	7.29E-04
9	GO:0005789: endoplasmic reticulum membrane	1.09E-03
10	GO:0005730: nucleolus	1.31E-03
11	GO:0005794: Golgi apparatus	1.40E-03
12	GO:0010494: cytoplasmic stress granule	1.83E-03
13	GO:0005884: actin filament	2.51E-03
14	GO:0048471: perinuclear region of cytoplasm	2.51E-03
15	GO:0030176: integral component of endoplasmic reticulum membrane	3.51E-03
16	GO:0005623: cell	3.78E-03
17	GO:0005741: mitochondrial outer membrane	4.63E-03
18	GO:0005618: cell wall	5.80E-03
19	GO:0030136: clathrin-coated vesicle	5.86E-03
20	GO:0009506: plasmodesma	5.86E-03
21	GO:0031965: nuclear membrane	7.19E-03
22	GO:0032580: Golgi cisterna membrane	8.61E-03
23	GO:0000932: P-body	9.74E-03
24	GO:0005622: intracellular	9.99E-03
25	GO:0005667: transcription factor complex	1.05E-02
26	GO:0019005: SCF ubiquitin ligase complex	1.17E-02
27	GO:0005743: mitochondrial inner membrane	1.33E-02
28	GO:0031902: late endosome membrane	1.57E-02
29	GO:0000139: Golgi membrane	1.73E-02
30	GO:0005856: cytoskeleton	1.80E-02
31	GO:0005635: nuclear envelope	2.15E-02
32	GO:0010008: endosome membrane	2.37E-02
33	GO:0005834: heterotrimeric G-protein complex	2.42E-02
34	GO:0009524: phragmoplast	3.21E-02
35	GO:0005802: trans-Golgi network	4.08E-02
36	GO:0005768: endosome	4.63E-02