co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G57660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080180: 2-methylguanosine metabolic process	0.00E+00
2	GO:0090070: positive regulation of ribosome biogenesis	0.00E+00
3	GO:0051391: tRNA acetylation	0.00E+00
4	GO:0039694: viral RNA genome replication	0.00E+00
5	GO:0090069: regulation of ribosome biogenesis	0.00E+00
6	GO:0071426: ribonucleoprotein complex export from nucleus	0.00E+00
7	GO:0006364: rRNA processing	4.12E-17
8	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	8.58E-10
9	GO:0009553: embryo sac development	8.66E-08
10	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.05E-07
11	GO:0006405: RNA export from nucleus	1.69E-05
12	GO:0010501: RNA secondary structure unwinding	3.22E-05
13	GO:0042254: ribosome biogenesis	3.34E-05
14	GO:0000028: ribosomal small subunit assembly	6.41E-05
15	GO:0036228: protein targeting to nuclear inner membrane	1.08E-04
16	GO:0000469: cleavage involved in rRNA processing	1.08E-04
17	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	1.08E-04
18	GO:0030490: maturation of SSU-rRNA	1.08E-04
19	GO:0010930: negative regulation of auxin mediated signaling pathway	1.08E-04
20	GO:1902182: shoot apical meristem development	1.08E-04
21	GO:0000972: transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	1.08E-04
22	GO:2000232: regulation of rRNA processing	1.08E-04
23	GO:0043985: histone H4-R3 methylation	1.08E-04
24	GO:0080009: mRNA methylation	2.52E-04
25	GO:0034470: ncRNA processing	2.52E-04
26	GO:0009793: embryo development ending in seed dormancy	4.02E-04
27	GO:0006421: asparaginyl-tRNA aminoacylation	4.19E-04
28	GO:0045604: regulation of epidermal cell differentiation	4.19E-04
29	GO:0009561: megagametogenesis	5.60E-04
30	GO:0007276: gamete generation	6.01E-04
31	GO:0006606: protein import into nucleus	6.53E-04
32	GO:0010197: polar nucleus fusion	7.01E-04
33	GO:0006479: protein methylation	7.98E-04
34	GO:1900864: mitochondrial RNA modification	7.98E-04
35	GO:0046345: abscisic acid catabolic process	7.98E-04
36	GO:0042274: ribosomal small subunit biogenesis	7.98E-04
37	GO:0042273: ribosomal large subunit biogenesis	7.98E-04
38	GO:0048825: cotyledon development	8.05E-04
39	GO:0009790: embryo development	9.73E-04
40	GO:0009451: RNA modification	1.23E-03
41	GO:0000741: karyogamy	1.23E-03
42	GO:0030488: tRNA methylation	1.47E-03
43	GO:0048444: floral organ morphogenesis	1.47E-03
44	GO:0016444: somatic cell DNA recombination	1.47E-03
45	GO:0010077: maintenance of inflorescence meristem identity	1.47E-03
46	GO:0006400: tRNA modification	1.73E-03
47	GO:0045995: regulation of embryonic development	1.73E-03
48	GO:0001522: pseudouridine synthesis	2.00E-03
49	GO:0019827: stem cell population maintenance	2.00E-03
50	GO:0042255: ribosome assembly	2.00E-03
51	GO:0051301: cell division	2.14E-03
52	GO:0009880: embryonic pattern specification	2.28E-03
53	GO:2000024: regulation of leaf development	2.57E-03
54	GO:0001708: cell fate specification	2.57E-03
55	GO:0006349: regulation of gene expression by genetic imprinting	2.88E-03
56	GO:1900865: chloroplast RNA modification	2.88E-03
57	GO:0006913: nucleocytoplasmic transport	3.53E-03
58	GO:0010582: floral meristem determinacy	3.87E-03
59	GO:0032259: methylation	4.20E-03
60	GO:2000012: regulation of auxin polar transport	4.23E-03
61	GO:0010030: positive regulation of seed germination	4.96E-03
62	GO:0000027: ribosomal large subunit assembly	5.75E-03
63	GO:0051302: regulation of cell division	6.15E-03
64	GO:0006334: nucleosome assembly	6.56E-03
65	GO:0009294: DNA mediated transformation	7.42E-03
66	GO:0009693: ethylene biosynthetic process	7.42E-03
67	GO:0051028: mRNA transport	8.32E-03
68	GO:0006342: chromatin silencing	9.26E-03
69	GO:0009960: endosperm development	9.26E-03
70	GO:0010305: leaf vascular tissue pattern formation	9.26E-03
71	GO:0048366: leaf development	1.53E-02
72	GO:0008219: cell death	1.68E-02
73	GO:0000724: double-strand break repair via homologous recombination	1.92E-02
74	GO:0009926: auxin polar transport	2.38E-02
75	GO:0000154: rRNA modification	2.59E-02
76	GO:0006260: DNA replication	2.73E-02
77	GO:0009909: regulation of flower development	3.17E-02
78	GO:0006417: regulation of translation	3.17E-02
79	GO:0006396: RNA processing	3.86E-02
80	GO:0009555: pollen development	4.23E-02

Rank	GO Term	Adjusted P value
1	GO:0003963: RNA-3'-phosphate cyclase activity	0.00E+00
2	GO:0004164: diphthine synthase activity	0.00E+00
3	GO:0034062: 5'-3' RNA polymerase activity	0.00E+00
4	GO:0003723: RNA binding	2.19E-14
5	GO:0000166: nucleotide binding	2.49E-12
6	GO:0008026: ATP-dependent helicase activity	3.20E-09
7	GO:0070181: small ribosomal subunit rRNA binding	2.29E-06
8	GO:0004004: ATP-dependent RNA helicase activity	4.37E-06
9	GO:0030515: snoRNA binding	4.92E-05
10	GO:0017056: structural constituent of nuclear pore	6.41E-05
11	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	1.08E-04
12	GO:0005487: nucleocytoplasmic transporter activity	1.21E-04
13	GO:0001054: RNA polymerase I activity	1.69E-04
14	GO:0043021: ribonucleoprotein complex binding	2.52E-04
15	GO:0008168: methyltransferase activity	2.94E-04
16	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.88E-04
17	GO:0004816: asparagine-tRNA ligase activity	4.19E-04
18	GO:0048027: mRNA 5'-UTR binding	6.01E-04
19	GO:0004519: endonuclease activity	9.02E-04
20	GO:0043022: ribosome binding	2.00E-03
21	GO:0042393: histone binding	2.26E-03
22	GO:0005543: phospholipid binding	3.53E-03
23	GO:0004521: endoribonuclease activity	3.87E-03
24	GO:0001056: RNA polymerase III activity	3.87E-03
25	GO:0003887: DNA-directed DNA polymerase activity	5.35E-03
26	GO:0043130: ubiquitin binding	5.75E-03
27	GO:0003713: transcription coactivator activity	9.26E-03
28	GO:0008536: Ran GTPase binding	9.26E-03
29	GO:0008080: N-acetyltransferase activity	9.26E-03
30	GO:0003676: nucleic acid binding	1.51E-02
31	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.62E-02
32	GO:0000987: core promoter proximal region sequence-specific DNA binding	2.05E-02
33	GO:0005524: ATP binding	3.00E-02
34	GO:0004386: helicase activity	4.02E-02
35	GO:0019843: rRNA binding	4.44E-02

Rank	GO Term	Adjusted P value
1	GO:0034455: t-UTP complex	0.00E+00
2	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	0.00E+00
3	GO:0030688: preribosome, small subunit precursor	0.00E+00
4	GO:0036396: MIS complex	0.00E+00
5	GO:0019034: viral replication complex	0.00E+00
6	GO:0005730: nucleolus	2.09E-31
7	GO:0005634: nucleus	5.66E-13
8	GO:0032040: small-subunit processome	3.94E-08
9	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.28E-07
10	GO:0030687: preribosome, large subunit precursor	4.08E-07
11	GO:0070545: PeBoW complex	6.05E-07
12	GO:0034399: nuclear periphery	6.41E-05
13	GO:0005763: mitochondrial small ribosomal subunit	1.00E-04
14	GO:0005736: DNA-directed RNA polymerase I complex	1.00E-04
15	GO:0044611: nuclear pore inner ring	1.08E-04
16	GO:0044613: nuclear pore central transport channel	2.52E-04
17	GO:0005643: nuclear pore	1.58E-03
18	GO:0005829: cytosol	2.26E-03
19	GO:0005666: DNA-directed RNA polymerase III complex	2.88E-03
20	GO:0005834: heterotrimeric G-protein complex	4.31E-03
21	GO:0043234: protein complex	5.35E-03
22	GO:0005654: nucleoplasm	5.92E-03
23	GO:0042651: thylakoid membrane	6.15E-03
24	GO:0015935: small ribosomal subunit	6.56E-03
25	GO:0030529: intracellular ribonucleoprotein complex	1.39E-02
26	GO:0015934: large ribosomal subunit	1.86E-02
27	GO:0005635: nuclear envelope	3.09E-02
28	GO:0016607: nuclear speck	3.39E-02