GO Enrichment Analysis of Co-expressed Genes with
AT3G57290
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002188: translation reinitiation | 0.00E+00 |
| 2 | GO:0006627: protein processing involved in protein targeting to mitochondrion | 0.00E+00 |
| 3 | GO:0033587: shikimate biosynthetic process | 0.00E+00 |
| 4 | GO:0048867: stem cell fate determination | 0.00E+00 |
| 5 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 6 | GO:0001732: formation of cytoplasmic translation initiation complex | 0.00E+00 |
| 7 | GO:0006413: translational initiation | 2.20E-07 |
| 8 | GO:0042254: ribosome biogenesis | 2.41E-05 |
| 9 | GO:0043609: regulation of carbon utilization | 3.64E-05 |
| 10 | GO:0006430: lysyl-tRNA aminoacylation | 3.64E-05 |
| 11 | GO:0019877: diaminopimelate biosynthetic process | 3.64E-05 |
| 12 | GO:0010163: high-affinity potassium ion import | 9.09E-05 |
| 13 | GO:0080009: mRNA methylation | 9.09E-05 |
| 14 | GO:0031538: negative regulation of anthocyanin metabolic process | 9.09E-05 |
| 15 | GO:0031204: posttranslational protein targeting to membrane, translocation | 9.09E-05 |
| 16 | GO:0034470: ncRNA processing | 9.09E-05 |
| 17 | GO:0019632: shikimate metabolic process | 9.09E-05 |
| 18 | GO:0045039: protein import into mitochondrial inner membrane | 1.58E-04 |
| 19 | GO:0006556: S-adenosylmethionine biosynthetic process | 1.58E-04 |
| 20 | GO:0046686: response to cadmium ion | 2.06E-04 |
| 21 | GO:0043967: histone H4 acetylation | 2.33E-04 |
| 22 | GO:0071329: cellular response to sucrose stimulus | 2.33E-04 |
| 23 | GO:0019287: isopentenyl diphosphate biosynthetic process, mevalonate pathway | 3.14E-04 |
| 24 | GO:0033320: UDP-D-xylose biosynthetic process | 3.14E-04 |
| 25 | GO:0051205: protein insertion into membrane | 3.14E-04 |
| 26 | GO:0006461: protein complex assembly | 4.01E-04 |
| 27 | GO:0043248: proteasome assembly | 4.92E-04 |
| 28 | GO:0042732: D-xylose metabolic process | 4.92E-04 |
| 29 | GO:0043966: histone H3 acetylation | 5.88E-04 |
| 30 | GO:0009094: L-phenylalanine biosynthetic process | 5.88E-04 |
| 31 | GO:0000054: ribosomal subunit export from nucleus | 5.88E-04 |
| 32 | GO:0009423: chorismate biosynthetic process | 5.88E-04 |
| 33 | GO:0006368: transcription elongation from RNA polymerase II promoter | 6.87E-04 |
| 34 | GO:0010928: regulation of auxin mediated signaling pathway | 7.90E-04 |
| 35 | GO:0035265: organ growth | 7.90E-04 |
| 36 | GO:0006875: cellular metal ion homeostasis | 7.90E-04 |
| 37 | GO:2000024: regulation of leaf development | 1.01E-03 |
| 38 | GO:0034765: regulation of ion transmembrane transport | 1.01E-03 |
| 39 | GO:0006098: pentose-phosphate shunt | 1.01E-03 |
| 40 | GO:0010162: seed dormancy process | 1.24E-03 |
| 41 | GO:0009089: lysine biosynthetic process via diaminopimelate | 1.36E-03 |
| 42 | GO:0009073: aromatic amino acid family biosynthetic process | 1.36E-03 |
| 43 | GO:0006913: nucleocytoplasmic transport | 1.36E-03 |
| 44 | GO:0006415: translational termination | 1.36E-03 |
| 45 | GO:0010152: pollen maturation | 1.49E-03 |
| 46 | GO:0006108: malate metabolic process | 1.62E-03 |
| 47 | GO:0009225: nucleotide-sugar metabolic process | 1.89E-03 |
| 48 | GO:0006457: protein folding | 2.06E-03 |
| 49 | GO:0009944: polarity specification of adaxial/abaxial axis | 2.18E-03 |
| 50 | GO:0010073: meristem maintenance | 2.33E-03 |
| 51 | GO:0006874: cellular calcium ion homeostasis | 2.33E-03 |
| 52 | GO:0006730: one-carbon metabolic process | 2.64E-03 |
| 53 | GO:0009294: DNA mediated transformation | 2.80E-03 |
| 54 | GO:0009693: ethylene biosynthetic process | 2.80E-03 |
| 55 | GO:0009561: megagametogenesis | 2.96E-03 |
| 56 | GO:0008284: positive regulation of cell proliferation | 3.13E-03 |
| 57 | GO:0010501: RNA secondary structure unwinding | 3.30E-03 |
| 58 | GO:0006606: protein import into nucleus | 3.30E-03 |
| 59 | GO:0042391: regulation of membrane potential | 3.30E-03 |
| 60 | GO:0030163: protein catabolic process | 4.37E-03 |
| 61 | GO:0071281: cellular response to iron ion | 4.37E-03 |
| 62 | GO:0016126: sterol biosynthetic process | 5.15E-03 |
| 63 | GO:0006888: ER to Golgi vesicle-mediated transport | 5.76E-03 |
| 64 | GO:0006810: transport | 5.90E-03 |
| 65 | GO:0006099: tricarboxylic acid cycle | 7.51E-03 |
| 66 | GO:0006839: mitochondrial transport | 7.97E-03 |
| 67 | GO:0008283: cell proliferation | 8.68E-03 |
| 68 | GO:0009735: response to cytokinin | 9.23E-03 |
| 69 | GO:0000154: rRNA modification | 9.42E-03 |
| 70 | GO:0009846: pollen germination | 1.02E-02 |
| 71 | GO:0009793: embryo development ending in seed dormancy | 1.05E-02 |
| 72 | GO:0009809: lignin biosynthetic process | 1.07E-02 |
| 73 | GO:0006096: glycolytic process | 1.20E-02 |
| 74 | GO:0009624: response to nematode | 1.37E-02 |
| 75 | GO:0009058: biosynthetic process | 1.67E-02 |
| 76 | GO:0009651: response to salt stress | 1.68E-02 |
| 77 | GO:0009790: embryo development | 1.80E-02 |
| 78 | GO:0016036: cellular response to phosphate starvation | 1.92E-02 |
| 79 | GO:0010468: regulation of gene expression | 2.29E-02 |
| 80 | GO:0006412: translation | 2.93E-02 |
| 81 | GO:0005975: carbohydrate metabolic process | 3.12E-02 |
| 82 | GO:0045892: negative regulation of transcription, DNA-templated | 3.70E-02 |
| 83 | GO:0006886: intracellular protein transport | 3.74E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003855: 3-dehydroquinate dehydratase activity | 0.00E+00 |
| 2 | GO:0004764: shikimate 3-dehydrogenase (NADP+) activity | 0.00E+00 |
| 3 | GO:0004421: hydroxymethylglutaryl-CoA synthase activity | 0.00E+00 |
| 4 | GO:0003743: translation initiation factor activity | 1.32E-05 |
| 5 | GO:0008746: NAD(P)+ transhydrogenase activity | 3.64E-05 |
| 6 | GO:0008840: 4-hydroxy-tetrahydrodipicolinate synthase | 3.64E-05 |
| 7 | GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | 3.64E-05 |
| 8 | GO:0004824: lysine-tRNA ligase activity | 3.64E-05 |
| 9 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 3.64E-05 |
| 10 | GO:0043024: ribosomal small subunit binding | 9.09E-05 |
| 11 | GO:0004478: methionine adenosyltransferase activity | 1.58E-04 |
| 12 | GO:0019829: cation-transporting ATPase activity | 1.58E-04 |
| 13 | GO:0047769: arogenate dehydratase activity | 3.14E-04 |
| 14 | GO:0004664: prephenate dehydratase activity | 3.14E-04 |
| 15 | GO:0000993: RNA polymerase II core binding | 3.14E-04 |
| 16 | GO:0016615: malate dehydrogenase activity | 4.92E-04 |
| 17 | GO:0048040: UDP-glucuronate decarboxylase activity | 4.92E-04 |
| 18 | GO:0031369: translation initiation factor binding | 4.92E-04 |
| 19 | GO:0005242: inward rectifier potassium channel activity | 5.88E-04 |
| 20 | GO:0070403: NAD+ binding | 5.88E-04 |
| 21 | GO:0030060: L-malate dehydrogenase activity | 5.88E-04 |
| 22 | GO:0030515: snoRNA binding | 6.87E-04 |
| 23 | GO:0030955: potassium ion binding | 1.12E-03 |
| 24 | GO:0004743: pyruvate kinase activity | 1.12E-03 |
| 25 | GO:0008026: ATP-dependent helicase activity | 1.27E-03 |
| 26 | GO:0044183: protein binding involved in protein folding | 1.36E-03 |
| 27 | GO:0015114: phosphate ion transmembrane transporter activity | 1.62E-03 |
| 28 | GO:0005388: calcium-transporting ATPase activity | 1.62E-03 |
| 29 | GO:0008565: protein transporter activity | 1.77E-03 |
| 30 | GO:0004407: histone deacetylase activity | 2.18E-03 |
| 31 | GO:0005249: voltage-gated potassium channel activity | 3.30E-03 |
| 32 | GO:0004402: histone acetyltransferase activity | 3.30E-03 |
| 33 | GO:0030551: cyclic nucleotide binding | 3.30E-03 |
| 34 | GO:0008536: Ran GTPase binding | 3.47E-03 |
| 35 | GO:0008483: transaminase activity | 4.75E-03 |
| 36 | GO:0016597: amino acid binding | 4.95E-03 |
| 37 | GO:0004004: ATP-dependent RNA helicase activity | 5.76E-03 |
| 38 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 5.97E-03 |
| 39 | GO:0003729: mRNA binding | 6.00E-03 |
| 40 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 6.18E-03 |
| 41 | GO:0004222: metalloendopeptidase activity | 6.61E-03 |
| 42 | GO:0003746: translation elongation factor activity | 7.28E-03 |
| 43 | GO:0050661: NADP binding | 7.97E-03 |
| 44 | GO:0051539: 4 iron, 4 sulfur cluster binding | 7.97E-03 |
| 45 | GO:0003735: structural constituent of ribosome | 8.67E-03 |
| 46 | GO:0005198: structural molecule activity | 9.42E-03 |
| 47 | GO:0005515: protein binding | 1.23E-02 |
| 48 | GO:0051082: unfolded protein binding | 1.37E-02 |
| 49 | GO:0004386: helicase activity | 1.46E-02 |
| 50 | GO:0005524: ATP binding | 1.53E-02 |
| 51 | GO:0030170: pyridoxal phosphate binding | 1.73E-02 |
| 52 | GO:0000287: magnesium ion binding | 2.72E-02 |
| 53 | GO:0003924: GTPase activity | 4.25E-02 |
| 54 | GO:0003723: RNA binding | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071540: eukaryotic translation initiation factor 3 complex, eIF3e | 0.00E+00 |
| 2 | GO:0036396: MIS complex | 0.00E+00 |
| 3 | GO:0005730: nucleolus | 1.44E-07 |
| 4 | GO:0005852: eukaryotic translation initiation factor 3 complex | 2.49E-07 |
| 5 | GO:0005829: cytosol | 3.93E-07 |
| 6 | GO:0005774: vacuolar membrane | 2.31E-05 |
| 7 | GO:0043614: multi-eIF complex | 3.64E-05 |
| 8 | GO:0071541: eukaryotic translation initiation factor 3 complex, eIF3m | 3.64E-05 |
| 9 | GO:0008023: transcription elongation factor complex | 3.64E-05 |
| 10 | GO:0005618: cell wall | 2.31E-04 |
| 11 | GO:0033588: Elongator holoenzyme complex | 2.33E-04 |
| 12 | GO:0031428: box C/D snoRNP complex | 4.92E-04 |
| 13 | GO:0030127: COPII vesicle coat | 4.92E-04 |
| 14 | GO:0005743: mitochondrial inner membrane | 6.72E-04 |
| 15 | GO:0000123: histone acetyltransferase complex | 6.87E-04 |
| 16 | GO:0008541: proteasome regulatory particle, lid subcomplex | 1.36E-03 |
| 17 | GO:0032040: small-subunit processome | 1.49E-03 |
| 18 | GO:0005750: mitochondrial respiratory chain complex III | 1.76E-03 |
| 19 | GO:0005759: mitochondrial matrix | 1.86E-03 |
| 20 | GO:0030176: integral component of endoplasmic reticulum membrane | 1.89E-03 |
| 21 | GO:0005758: mitochondrial intermembrane space | 2.18E-03 |
| 22 | GO:0005737: cytoplasm | 2.38E-03 |
| 23 | GO:0005741: mitochondrial outer membrane | 2.48E-03 |
| 24 | GO:0009532: plastid stroma | 2.48E-03 |
| 25 | GO:0009506: plasmodesma | 2.62E-03 |
| 26 | GO:0009570: chloroplast stroma | 2.68E-03 |
| 27 | GO:0022625: cytosolic large ribosomal subunit | 4.07E-03 |
| 28 | GO:0009536: plastid | 4.69E-03 |
| 29 | GO:0010319: stromule | 4.75E-03 |
| 30 | GO:0030529: intracellular ribonucleoprotein complex | 5.15E-03 |
| 31 | GO:0015934: large ribosomal subunit | 6.83E-03 |
| 32 | GO:0005887: integral component of plasma membrane | 7.72E-03 |
| 33 | GO:0009507: chloroplast | 1.00E-02 |
| 34 | GO:0000502: proteasome complex | 1.07E-02 |
| 35 | GO:0005635: nuclear envelope | 1.12E-02 |
| 36 | GO:0005783: endoplasmic reticulum | 1.16E-02 |
| 37 | GO:0016607: nuclear speck | 1.23E-02 |
| 38 | GO:0005654: nucleoplasm | 1.58E-02 |
| 39 | GO:0005840: ribosome | 2.15E-02 |
| 40 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.95E-02 |
| 41 | GO:0016020: membrane | 3.82E-02 |