GO Enrichment Analysis of Co-expressed Genes with
AT3G57050
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009661: chromoplast organization | 0.00E+00 |
| 2 | GO:0032780: negative regulation of ATPase activity | 0.00E+00 |
| 3 | GO:0009583: detection of light stimulus | 0.00E+00 |
| 4 | GO:0046294: formaldehyde catabolic process | 0.00E+00 |
| 5 | GO:0010477: response to sulfur dioxide | 0.00E+00 |
| 6 | GO:0045747: positive regulation of Notch signaling pathway | 0.00E+00 |
| 7 | GO:0071000: response to magnetism | 0.00E+00 |
| 8 | GO:0032928: regulation of superoxide anion generation | 0.00E+00 |
| 9 | GO:1904215: regulation of protein import into chloroplast stroma | 0.00E+00 |
| 10 | GO:0010343: singlet oxygen-mediated programmed cell death | 1.29E-06 |
| 11 | GO:0016120: carotene biosynthetic process | 3.35E-05 |
| 12 | GO:0010117: photoprotection | 3.35E-05 |
| 13 | GO:0009658: chloroplast organization | 1.11E-04 |
| 14 | GO:0072387: flavin adenine dinucleotide metabolic process | 1.62E-04 |
| 15 | GO:0071461: cellular response to redox state | 1.62E-04 |
| 16 | GO:0006430: lysyl-tRNA aminoacylation | 1.62E-04 |
| 17 | GO:0006508: proteolysis | 2.43E-04 |
| 18 | GO:0006790: sulfur compound metabolic process | 3.48E-04 |
| 19 | GO:0006996: organelle organization | 3.69E-04 |
| 20 | GO:1904143: positive regulation of carotenoid biosynthetic process | 3.69E-04 |
| 21 | GO:0016122: xanthophyll metabolic process | 3.69E-04 |
| 22 | GO:1901529: positive regulation of anion channel activity | 3.69E-04 |
| 23 | GO:2000030: regulation of response to red or far red light | 3.69E-04 |
| 24 | GO:0080005: photosystem stoichiometry adjustment | 3.69E-04 |
| 25 | GO:0010617: circadian regulation of calcium ion oscillation | 3.69E-04 |
| 26 | GO:0099402: plant organ development | 3.69E-04 |
| 27 | GO:0009150: purine ribonucleotide metabolic process | 6.04E-04 |
| 28 | GO:0006696: ergosterol biosynthetic process | 6.04E-04 |
| 29 | GO:0010351: lithium ion transport | 6.04E-04 |
| 30 | GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation | 6.04E-04 |
| 31 | GO:1902448: positive regulation of shade avoidance | 6.04E-04 |
| 32 | GO:0006013: mannose metabolic process | 6.04E-04 |
| 33 | GO:0008652: cellular amino acid biosynthetic process | 6.04E-04 |
| 34 | GO:1901672: positive regulation of systemic acquired resistance | 6.04E-04 |
| 35 | GO:0016226: iron-sulfur cluster assembly | 8.11E-04 |
| 36 | GO:2001141: regulation of RNA biosynthetic process | 8.63E-04 |
| 37 | GO:0009067: aspartate family amino acid biosynthetic process | 8.63E-04 |
| 38 | GO:1902358: sulfate transmembrane transport | 8.63E-04 |
| 39 | GO:0046653: tetrahydrofolate metabolic process | 8.63E-04 |
| 40 | GO:0009399: nitrogen fixation | 8.63E-04 |
| 41 | GO:0005987: sucrose catabolic process | 8.63E-04 |
| 42 | GO:0033014: tetrapyrrole biosynthetic process | 8.63E-04 |
| 43 | GO:1901332: negative regulation of lateral root development | 8.63E-04 |
| 44 | GO:0051289: protein homotetramerization | 8.63E-04 |
| 45 | GO:0016117: carotenoid biosynthetic process | 1.03E-03 |
| 46 | GO:0010051: xylem and phloem pattern formation | 1.11E-03 |
| 47 | GO:0034613: cellular protein localization | 1.14E-03 |
| 48 | GO:0006542: glutamine biosynthetic process | 1.14E-03 |
| 49 | GO:0015994: chlorophyll metabolic process | 1.14E-03 |
| 50 | GO:0006221: pyrimidine nucleotide biosynthetic process | 1.14E-03 |
| 51 | GO:1902347: response to strigolactone | 1.14E-03 |
| 52 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.45E-03 |
| 53 | GO:0009229: thiamine diphosphate biosynthetic process | 1.45E-03 |
| 54 | GO:0007094: mitotic spindle assembly checkpoint | 1.45E-03 |
| 55 | GO:0000304: response to singlet oxygen | 1.45E-03 |
| 56 | GO:0098719: sodium ion import across plasma membrane | 1.45E-03 |
| 57 | GO:0046283: anthocyanin-containing compound metabolic process | 1.45E-03 |
| 58 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.78E-03 |
| 59 | GO:0016070: RNA metabolic process | 1.78E-03 |
| 60 | GO:0006555: methionine metabolic process | 1.78E-03 |
| 61 | GO:0031053: primary miRNA processing | 1.78E-03 |
| 62 | GO:1901371: regulation of leaf morphogenesis | 1.78E-03 |
| 63 | GO:0060918: auxin transport | 1.78E-03 |
| 64 | GO:0009228: thiamine biosynthetic process | 1.78E-03 |
| 65 | GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione | 1.78E-03 |
| 66 | GO:0033365: protein localization to organelle | 1.78E-03 |
| 67 | GO:0010019: chloroplast-nucleus signaling pathway | 2.14E-03 |
| 68 | GO:0010310: regulation of hydrogen peroxide metabolic process | 2.14E-03 |
| 69 | GO:0019509: L-methionine salvage from methylthioadenosine | 2.14E-03 |
| 70 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 2.14E-03 |
| 71 | GO:0010016: shoot system morphogenesis | 2.14E-03 |
| 72 | GO:0042128: nitrate assimilation | 2.35E-03 |
| 73 | GO:0015995: chlorophyll biosynthetic process | 2.47E-03 |
| 74 | GO:0051510: regulation of unidimensional cell growth | 2.52E-03 |
| 75 | GO:0010038: response to metal ion | 2.52E-03 |
| 76 | GO:0015693: magnesium ion transport | 2.52E-03 |
| 77 | GO:0009396: folic acid-containing compound biosynthetic process | 2.52E-03 |
| 78 | GO:0050821: protein stabilization | 2.91E-03 |
| 79 | GO:0009231: riboflavin biosynthetic process | 2.91E-03 |
| 80 | GO:0048564: photosystem I assembly | 2.91E-03 |
| 81 | GO:0045292: mRNA cis splicing, via spliceosome | 2.91E-03 |
| 82 | GO:0005978: glycogen biosynthetic process | 2.91E-03 |
| 83 | GO:0009704: de-etiolation | 2.91E-03 |
| 84 | GO:0044030: regulation of DNA methylation | 3.33E-03 |
| 85 | GO:0071482: cellular response to light stimulus | 3.33E-03 |
| 86 | GO:0009880: embryonic pattern specification | 3.33E-03 |
| 87 | GO:0055114: oxidation-reduction process | 4.13E-03 |
| 88 | GO:0051453: regulation of intracellular pH | 4.22E-03 |
| 89 | GO:0005982: starch metabolic process | 4.22E-03 |
| 90 | GO:1900426: positive regulation of defense response to bacterium | 4.22E-03 |
| 91 | GO:0009638: phototropism | 4.22E-03 |
| 92 | GO:0035999: tetrahydrofolate interconversion | 4.22E-03 |
| 93 | GO:0009098: leucine biosynthetic process | 4.22E-03 |
| 94 | GO:0009688: abscisic acid biosynthetic process | 4.69E-03 |
| 95 | GO:0045036: protein targeting to chloroplast | 4.69E-03 |
| 96 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.69E-03 |
| 97 | GO:0009644: response to high light intensity | 4.81E-03 |
| 98 | GO:0043085: positive regulation of catalytic activity | 5.19E-03 |
| 99 | GO:0006879: cellular iron ion homeostasis | 5.19E-03 |
| 100 | GO:0006352: DNA-templated transcription, initiation | 5.19E-03 |
| 101 | GO:0045037: protein import into chloroplast stroma | 5.69E-03 |
| 102 | GO:0010075: regulation of meristem growth | 6.22E-03 |
| 103 | GO:0009767: photosynthetic electron transport chain | 6.22E-03 |
| 104 | GO:0009785: blue light signaling pathway | 6.22E-03 |
| 105 | GO:0010207: photosystem II assembly | 6.76E-03 |
| 106 | GO:0090351: seedling development | 7.32E-03 |
| 107 | GO:0000162: tryptophan biosynthetic process | 7.90E-03 |
| 108 | GO:2000377: regulation of reactive oxygen species metabolic process | 8.48E-03 |
| 109 | GO:0006487: protein N-linked glycosylation | 8.48E-03 |
| 110 | GO:0006418: tRNA aminoacylation for protein translation | 9.09E-03 |
| 111 | GO:0006730: one-carbon metabolic process | 1.04E-02 |
| 112 | GO:0010087: phloem or xylem histogenesis | 1.31E-02 |
| 113 | GO:0010118: stomatal movement | 1.31E-02 |
| 114 | GO:0006814: sodium ion transport | 1.45E-02 |
| 115 | GO:0042752: regulation of circadian rhythm | 1.45E-02 |
| 116 | GO:0009646: response to absence of light | 1.45E-02 |
| 117 | GO:0019252: starch biosynthetic process | 1.52E-02 |
| 118 | GO:0009851: auxin biosynthetic process | 1.52E-02 |
| 119 | GO:0009791: post-embryonic development | 1.52E-02 |
| 120 | GO:0048825: cotyledon development | 1.52E-02 |
| 121 | GO:0019761: glucosinolate biosynthetic process | 1.67E-02 |
| 122 | GO:0030163: protein catabolic process | 1.75E-02 |
| 123 | GO:0071805: potassium ion transmembrane transport | 1.91E-02 |
| 124 | GO:0016579: protein deubiquitination | 1.99E-02 |
| 125 | GO:0010027: thylakoid membrane organization | 2.07E-02 |
| 126 | GO:0009816: defense response to bacterium, incompatible interaction | 2.16E-02 |
| 127 | GO:0006974: cellular response to DNA damage stimulus | 2.24E-02 |
| 128 | GO:0006950: response to stress | 2.33E-02 |
| 129 | GO:0018298: protein-chromophore linkage | 2.51E-02 |
| 130 | GO:0048481: plant ovule development | 2.51E-02 |
| 131 | GO:0046686: response to cadmium ion | 2.51E-02 |
| 132 | GO:0006457: protein folding | 2.60E-02 |
| 133 | GO:0010218: response to far red light | 2.69E-02 |
| 134 | GO:0006811: ion transport | 2.69E-02 |
| 135 | GO:0010043: response to zinc ion | 2.78E-02 |
| 136 | GO:0007568: aging | 2.78E-02 |
| 137 | GO:0009637: response to blue light | 2.97E-02 |
| 138 | GO:0009853: photorespiration | 2.97E-02 |
| 139 | GO:0006897: endocytosis | 3.35E-02 |
| 140 | GO:0010114: response to red light | 3.55E-02 |
| 141 | GO:0009744: response to sucrose | 3.55E-02 |
| 142 | GO:0009640: photomorphogenesis | 3.55E-02 |
| 143 | GO:0009965: leaf morphogenesis | 3.86E-02 |
| 144 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.50E-02 |
| 145 | GO:0010224: response to UV-B | 4.50E-02 |
| 146 | GO:0006417: regulation of translation | 4.72E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008482: sulfite oxidase activity | 0.00E+00 |
| 2 | GO:0042030: ATPase inhibitor activity | 0.00E+00 |
| 3 | GO:0070009: serine-type aminopeptidase activity | 0.00E+00 |
| 4 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 5 | GO:0045436: lycopene beta cyclase activity | 0.00E+00 |
| 6 | GO:0050486: intramolecular transferase activity, transferring hydroxy groups | 0.00E+00 |
| 7 | GO:0008902: hydroxymethylpyrimidine kinase activity | 0.00E+00 |
| 8 | GO:0018738: S-formylglutathione hydrolase activity | 0.00E+00 |
| 9 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 10 | GO:0004789: thiamine-phosphate diphosphorylase activity | 0.00E+00 |
| 11 | GO:0008972: phosphomethylpyrimidine kinase activity | 0.00E+00 |
| 12 | GO:0004848: ureidoglycolate hydrolase activity | 4.78E-06 |
| 13 | GO:0030941: chloroplast targeting sequence binding | 1.62E-04 |
| 14 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 1.62E-04 |
| 15 | GO:0046906: tetrapyrrole binding | 1.62E-04 |
| 16 | GO:0033984: indole-3-glycerol-phosphate lyase activity | 1.62E-04 |
| 17 | GO:0004824: lysine-tRNA ligase activity | 1.62E-04 |
| 18 | GO:0051996: squalene synthase activity | 1.62E-04 |
| 19 | GO:0016783: sulfurtransferase activity | 1.62E-04 |
| 20 | GO:0071949: FAD binding | 1.84E-04 |
| 21 | GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | 3.69E-04 |
| 22 | GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity | 3.69E-04 |
| 23 | GO:0004477: methenyltetrahydrofolate cyclohydrolase activity | 3.69E-04 |
| 24 | GO:0004109: coproporphyrinogen oxidase activity | 3.69E-04 |
| 25 | GO:0015929: hexosaminidase activity | 3.69E-04 |
| 26 | GO:0004412: homoserine dehydrogenase activity | 3.69E-04 |
| 27 | GO:0004563: beta-N-acetylhexosaminidase activity | 3.69E-04 |
| 28 | GO:0004046: aminoacylase activity | 3.69E-04 |
| 29 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 3.69E-04 |
| 30 | GO:0004180: carboxypeptidase activity | 6.04E-04 |
| 31 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 6.04E-04 |
| 32 | GO:0032947: protein complex scaffold | 6.04E-04 |
| 33 | GO:0003861: 3-isopropylmalate dehydratase activity | 6.04E-04 |
| 34 | GO:0003935: GTP cyclohydrolase II activity | 6.04E-04 |
| 35 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 6.04E-04 |
| 36 | GO:0004176: ATP-dependent peptidase activity | 7.44E-04 |
| 37 | GO:0000339: RNA cap binding | 8.63E-04 |
| 38 | GO:0009882: blue light photoreceptor activity | 8.63E-04 |
| 39 | GO:0047627: adenylylsulfatase activity | 8.63E-04 |
| 40 | GO:0004416: hydroxyacylglutathione hydrolase activity | 8.63E-04 |
| 41 | GO:0004792: thiosulfate sulfurtransferase activity | 8.63E-04 |
| 42 | GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity | 8.63E-04 |
| 43 | GO:0001053: plastid sigma factor activity | 1.14E-03 |
| 44 | GO:0004834: tryptophan synthase activity | 1.14E-03 |
| 45 | GO:0051861: glycolipid binding | 1.14E-03 |
| 46 | GO:0016987: sigma factor activity | 1.14E-03 |
| 47 | GO:0008878: glucose-1-phosphate adenylyltransferase activity | 1.14E-03 |
| 48 | GO:0033926: glycopeptide alpha-N-acetylgalactosaminidase activity | 1.45E-03 |
| 49 | GO:0004356: glutamate-ammonia ligase activity | 1.45E-03 |
| 50 | GO:0030151: molybdenum ion binding | 1.45E-03 |
| 51 | GO:0015081: sodium ion transmembrane transporter activity | 1.78E-03 |
| 52 | GO:0000293: ferric-chelate reductase activity | 1.78E-03 |
| 53 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 1.78E-03 |
| 54 | GO:0008237: metallopeptidase activity | 1.88E-03 |
| 55 | GO:0004559: alpha-mannosidase activity | 2.14E-03 |
| 56 | GO:0019899: enzyme binding | 2.52E-03 |
| 57 | GO:0004564: beta-fructofuranosidase activity | 2.91E-03 |
| 58 | GO:0004222: metalloendopeptidase activity | 3.01E-03 |
| 59 | GO:0008271: secondary active sulfate transmembrane transporter activity | 3.33E-03 |
| 60 | GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity | 3.77E-03 |
| 61 | GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors | 3.77E-03 |
| 62 | GO:0004575: sucrose alpha-glucosidase activity | 4.22E-03 |
| 63 | GO:0001055: RNA polymerase II activity | 4.22E-03 |
| 64 | GO:0001054: RNA polymerase I activity | 5.19E-03 |
| 65 | GO:0004177: aminopeptidase activity | 5.19E-03 |
| 66 | GO:0015386: potassium:proton antiporter activity | 5.19E-03 |
| 67 | GO:0004129: cytochrome-c oxidase activity | 5.19E-03 |
| 68 | GO:0008233: peptidase activity | 5.42E-03 |
| 69 | GO:0016491: oxidoreductase activity | 5.61E-03 |
| 70 | GO:0015116: sulfate transmembrane transporter activity | 5.69E-03 |
| 71 | GO:0001056: RNA polymerase III activity | 5.69E-03 |
| 72 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 5.99E-03 |
| 73 | GO:0015095: magnesium ion transmembrane transporter activity | 6.22E-03 |
| 74 | GO:0031072: heat shock protein binding | 6.22E-03 |
| 75 | GO:0015266: protein channel activity | 6.22E-03 |
| 76 | GO:0051536: iron-sulfur cluster binding | 8.48E-03 |
| 77 | GO:0005528: FK506 binding | 8.48E-03 |
| 78 | GO:0051082: unfolded protein binding | 8.52E-03 |
| 79 | GO:0016746: transferase activity, transferring acyl groups | 8.78E-03 |
| 80 | GO:0004812: aminoacyl-tRNA ligase activity | 1.24E-02 |
| 81 | GO:0008080: N-acetyltransferase activity | 1.38E-02 |
| 82 | GO:0046872: metal ion binding | 1.52E-02 |
| 83 | GO:0016887: ATPase activity | 1.58E-02 |
| 84 | GO:0048038: quinone binding | 1.60E-02 |
| 85 | GO:0004843: thiol-dependent ubiquitin-specific protease activity | 1.60E-02 |
| 86 | GO:0004518: nuclease activity | 1.67E-02 |
| 87 | GO:0015385: sodium:proton antiporter activity | 1.75E-02 |
| 88 | GO:0042802: identical protein binding | 1.88E-02 |
| 89 | GO:0016597: amino acid binding | 1.99E-02 |
| 90 | GO:0005515: protein binding | 2.03E-02 |
| 91 | GO:0004806: triglyceride lipase activity | 2.33E-02 |
| 92 | GO:0008236: serine-type peptidase activity | 2.42E-02 |
| 93 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.51E-02 |
| 94 | GO:0005096: GTPase activator activity | 2.60E-02 |
| 95 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 3.16E-02 |
| 96 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.26E-02 |
| 97 | GO:0004185: serine-type carboxypeptidase activity | 3.55E-02 |
| 98 | GO:0035091: phosphatidylinositol binding | 3.76E-02 |
| 99 | GO:0015293: symporter activity | 3.86E-02 |
| 100 | GO:0005198: structural molecule activity | 3.86E-02 |
| 101 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 1.70E-17 |
| 2 | GO:0031969: chloroplast membrane | 1.42E-06 |
| 3 | GO:0005845: mRNA cap binding complex | 1.62E-04 |
| 4 | GO:0031972: chloroplast intermembrane space | 1.62E-04 |
| 5 | GO:0009941: chloroplast envelope | 2.41E-04 |
| 6 | GO:0080085: signal recognition particle, chloroplast targeting | 3.69E-04 |
| 7 | GO:0005846: nuclear cap binding complex | 3.69E-04 |
| 8 | GO:0016605: PML body | 6.04E-04 |
| 9 | GO:0009570: chloroplast stroma | 6.43E-04 |
| 10 | GO:0009527: plastid outer membrane | 1.14E-03 |
| 11 | GO:0009517: PSII associated light-harvesting complex II | 1.14E-03 |
| 12 | GO:0009536: plastid | 1.34E-03 |
| 13 | GO:0030140: trans-Golgi network transport vesicle | 1.78E-03 |
| 14 | GO:0009840: chloroplastic endopeptidase Clp complex | 2.14E-03 |
| 15 | GO:0031359: integral component of chloroplast outer membrane | 2.52E-03 |
| 16 | GO:0009707: chloroplast outer membrane | 2.74E-03 |
| 17 | GO:0005773: vacuole | 3.07E-03 |
| 18 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 3.33E-03 |
| 19 | GO:0016604: nuclear body | 4.22E-03 |
| 20 | GO:0009535: chloroplast thylakoid membrane | 4.41E-03 |
| 21 | GO:0005875: microtubule associated complex | 7.90E-03 |
| 22 | GO:0000419: DNA-directed RNA polymerase V complex | 7.90E-03 |
| 23 | GO:0042651: thylakoid membrane | 9.09E-03 |
| 24 | GO:0009532: plastid stroma | 9.72E-03 |
| 25 | GO:0009543: chloroplast thylakoid lumen | 1.07E-02 |
| 26 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 1.17E-02 |
| 27 | GO:0009505: plant-type cell wall | 1.81E-02 |
| 28 | GO:0032580: Golgi cisterna membrane | 1.83E-02 |
| 29 | GO:0010319: stromule | 1.91E-02 |
| 30 | GO:0005856: cytoskeleton | 3.86E-02 |
| 31 | GO:0031966: mitochondrial membrane | 4.18E-02 |