Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G57030

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
2GO:0070125: mitochondrial translational elongation0.00E+00
3GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
4GO:1901918: negative regulation of exoribonuclease activity0.00E+00
5GO:0098586: cellular response to virus0.00E+00
6GO:0044249: cellular biosynthetic process0.00E+00
7GO:0009715: chalcone biosynthetic process0.00E+00
8GO:0017009: protein-phycocyanobilin linkage0.00E+00
9GO:0042821: pyridoxal biosynthetic process0.00E+00
10GO:0042820: vitamin B6 catabolic process0.00E+00
11GO:0015882: L-ascorbic acid transport0.00E+00
12GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
13GO:0006114: glycerol biosynthetic process0.00E+00
14GO:0015979: photosynthesis2.37E-10
15GO:0018298: protein-chromophore linkage1.17E-08
16GO:0090391: granum assembly3.97E-08
17GO:0009644: response to high light intensity2.14E-06
18GO:0009645: response to low light intensity stimulus6.73E-06
19GO:0009768: photosynthesis, light harvesting in photosystem I6.80E-06
20GO:0009642: response to light intensity1.02E-05
21GO:0005977: glycogen metabolic process1.77E-05
22GO:0015994: chlorophyll metabolic process6.97E-05
23GO:0006021: inositol biosynthetic process6.97E-05
24GO:0010021: amylopectin biosynthetic process6.97E-05
25GO:0010207: photosystem II assembly8.27E-05
26GO:0015995: chlorophyll biosynthetic process1.03E-04
27GO:0009643: photosynthetic acclimation1.58E-04
28GO:0046855: inositol phosphate dephosphorylation1.58E-04
29GO:0010189: vitamin E biosynthetic process2.15E-04
30GO:0010196: nonphotochemical quenching2.80E-04
31GO:0009769: photosynthesis, light harvesting in photosystem II2.80E-04
32GO:0010114: response to red light2.89E-04
33GO:0055114: oxidation-reduction process3.00E-04
34GO:0006436: tryptophanyl-tRNA aminoacylation3.32E-04
35GO:1902458: positive regulation of stomatal opening3.32E-04
36GO:0010028: xanthophyll cycle3.32E-04
37GO:0034337: RNA folding3.32E-04
38GO:0006419: alanyl-tRNA aminoacylation3.32E-04
39GO:0009443: pyridoxal 5'-phosphate salvage3.32E-04
40GO:1904966: positive regulation of vitamin E biosynthetic process3.32E-04
41GO:0033388: putrescine biosynthetic process from arginine3.32E-04
42GO:0000481: maturation of 5S rRNA3.32E-04
43GO:1904964: positive regulation of phytol biosynthetic process3.32E-04
44GO:0071277: cellular response to calcium ion3.32E-04
45GO:0043686: co-translational protein modification3.32E-04
46GO:0048564: photosystem I assembly3.52E-04
47GO:0009657: plastid organization4.31E-04
48GO:0016122: xanthophyll metabolic process7.24E-04
49GO:0006729: tetrahydrobiopterin biosynthetic process7.24E-04
50GO:1903426: regulation of reactive oxygen species biosynthetic process7.24E-04
51GO:0006568: tryptophan metabolic process7.24E-04
52GO:0009629: response to gravity7.24E-04
53GO:0046741: transport of virus in host, tissue to tissue7.24E-04
54GO:0042853: L-alanine catabolic process7.24E-04
55GO:0009915: phloem sucrose loading7.24E-04
56GO:0010042: response to manganese ion7.24E-04
57GO:0048314: embryo sac morphogenesis7.24E-04
58GO:1902326: positive regulation of chlorophyll biosynthetic process7.24E-04
59GO:2000030: regulation of response to red or far red light7.24E-04
60GO:0030187: melatonin biosynthetic process7.24E-04
61GO:0006432: phenylalanyl-tRNA aminoacylation7.24E-04
62GO:0000256: allantoin catabolic process7.24E-04
63GO:0042548: regulation of photosynthesis, light reaction7.24E-04
64GO:0006435: threonyl-tRNA aminoacylation7.24E-04
65GO:0009446: putrescine biosynthetic process7.24E-04
66GO:0043085: positive regulation of catalytic activity8.23E-04
67GO:0009773: photosynthetic electron transport in photosystem I8.23E-04
68GO:0006790: sulfur compound metabolic process9.39E-04
69GO:0010136: ureide catabolic process1.17E-03
70GO:0009405: pathogenesis1.17E-03
71GO:0006013: mannose metabolic process1.17E-03
72GO:0010020: chloroplast fission1.19E-03
73GO:0010218: response to far red light1.19E-03
74GO:0046854: phosphatidylinositol phosphorylation1.34E-03
75GO:0009637: response to blue light1.41E-03
76GO:0009853: photorespiration1.41E-03
77GO:0034599: cellular response to oxidative stress1.49E-03
78GO:0006413: translational initiation1.64E-03
79GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.68E-03
80GO:0006020: inositol metabolic process1.68E-03
81GO:0071484: cellular response to light intensity1.68E-03
82GO:0009052: pentose-phosphate shunt, non-oxidative branch1.68E-03
83GO:0006145: purine nucleobase catabolic process1.68E-03
84GO:0046739: transport of virus in multicellular host1.68E-03
85GO:0051016: barbed-end actin filament capping1.68E-03
86GO:0042989: sequestering of actin monomers1.68E-03
87GO:0042823: pyridoxal phosphate biosynthetic process1.68E-03
88GO:0043572: plastid fission1.68E-03
89GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.68E-03
90GO:0009793: embryo development ending in seed dormancy1.86E-03
91GO:0009269: response to desiccation2.00E-03
92GO:0009765: photosynthesis, light harvesting2.26E-03
93GO:0006109: regulation of carbohydrate metabolic process2.26E-03
94GO:0009306: protein secretion2.59E-03
95GO:0016558: protein import into peroxisome matrix2.89E-03
96GO:0030041: actin filament polymerization2.89E-03
97GO:0010117: photoprotection2.89E-03
98GO:0045038: protein import into chloroplast thylakoid membrane2.89E-03
99GO:0006656: phosphatidylcholine biosynthetic process2.89E-03
100GO:0031365: N-terminal protein amino acid modification2.89E-03
101GO:0006662: glycerol ether metabolic process3.26E-03
102GO:0009658: chloroplast organization3.56E-03
103GO:0042549: photosystem II stabilization3.57E-03
104GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.57E-03
105GO:0009117: nucleotide metabolic process3.57E-03
106GO:0019252: starch biosynthetic process3.76E-03
107GO:0071470: cellular response to osmotic stress4.30E-03
108GO:0019509: L-methionine salvage from methylthioadenosine4.30E-03
109GO:0009409: response to cold4.31E-03
110GO:0080167: response to karrikin4.94E-03
111GO:0048528: post-embryonic root development5.07E-03
112GO:0030026: cellular manganese ion homeostasis5.07E-03
113GO:0006400: tRNA modification5.07E-03
114GO:0051510: regulation of unidimensional cell growth5.07E-03
115GO:0010027: thylakoid membrane organization5.83E-03
116GO:0046686: response to cadmium ion5.84E-03
117GO:0009231: riboflavin biosynthetic process5.89E-03
118GO:0016559: peroxisome fission5.89E-03
119GO:0030091: protein repair5.89E-03
120GO:0009704: de-etiolation5.89E-03
121GO:0032508: DNA duplex unwinding5.89E-03
122GO:2000070: regulation of response to water deprivation5.89E-03
123GO:0031540: regulation of anthocyanin biosynthetic process5.89E-03
124GO:0009416: response to light stimulus6.19E-03
125GO:0045454: cell redox homeostasis6.50E-03
126GO:0017004: cytochrome complex assembly6.76E-03
127GO:0032544: plastid translation6.76E-03
128GO:0006979: response to oxidative stress7.08E-03
129GO:0016311: dephosphorylation7.23E-03
130GO:0098656: anion transmembrane transport7.67E-03
131GO:0010206: photosystem II repair7.67E-03
132GO:0006098: pentose-phosphate shunt7.67E-03
133GO:0090333: regulation of stomatal closure7.67E-03
134GO:0006754: ATP biosynthetic process7.67E-03
135GO:0000373: Group II intron splicing7.67E-03
136GO:0009407: toxin catabolic process8.40E-03
137GO:0009098: leucine biosynthetic process8.61E-03
138GO:0007568: aging8.81E-03
139GO:0007623: circadian rhythm8.97E-03
140GO:0006949: syncytium formation9.61E-03
141GO:0006259: DNA metabolic process9.61E-03
142GO:0006265: DNA topological change1.06E-02
143GO:0006415: translational termination1.06E-02
144GO:0006094: gluconeogenesis1.28E-02
145GO:0009767: photosynthetic electron transport chain1.28E-02
146GO:0005986: sucrose biosynthetic process1.28E-02
147GO:0006006: glucose metabolic process1.28E-02
148GO:0006807: nitrogen compound metabolic process1.28E-02
149GO:0009266: response to temperature stimulus1.40E-02
150GO:0009636: response to toxic substance1.40E-02
151GO:0019253: reductive pentose-phosphate cycle1.40E-02
152GO:0006810: transport1.47E-02
153GO:0046688: response to copper ion1.51E-02
154GO:0019853: L-ascorbic acid biosynthetic process1.51E-02
155GO:0031347: regulation of defense response1.51E-02
156GO:0071732: cellular response to nitric oxide1.51E-02
157GO:0090351: seedling development1.51E-02
158GO:0042254: ribosome biogenesis1.60E-02
159GO:0006833: water transport1.63E-02
160GO:0006863: purine nucleobase transport1.63E-02
161GO:0006364: rRNA processing1.69E-02
162GO:0010224: response to UV-B1.75E-02
163GO:0080147: root hair cell development1.76E-02
164GO:0009863: salicylic acid mediated signaling pathway1.76E-02
165GO:0007010: cytoskeleton organization1.76E-02
166GO:0009735: response to cytokinin1.85E-02
167GO:0051302: regulation of cell division1.89E-02
168GO:0019953: sexual reproduction1.89E-02
169GO:0008299: isoprenoid biosynthetic process1.89E-02
170GO:0006418: tRNA aminoacylation for protein translation1.89E-02
171GO:0007017: microtubule-based process1.89E-02
172GO:0006096: glycolytic process2.00E-02
173GO:0019915: lipid storage2.02E-02
174GO:0051321: meiotic cell cycle2.02E-02
175GO:0006730: one-carbon metabolic process2.15E-02
176GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.29E-02
177GO:0071369: cellular response to ethylene stimulus2.29E-02
178GO:0009553: embryo sac development2.33E-02
179GO:0006396: RNA processing2.48E-02
180GO:0006606: protein import into nucleus2.72E-02
181GO:0034220: ion transmembrane transport2.72E-02
182GO:0048868: pollen tube development2.87E-02
183GO:0055085: transmembrane transport3.01E-02
184GO:0007059: chromosome segregation3.02E-02
185GO:0009791: post-embryonic development3.18E-02
186GO:0008654: phospholipid biosynthetic process3.18E-02
187GO:0009845: seed germination3.26E-02
188GO:0000302: response to reactive oxygen species3.33E-02
189GO:0010193: response to ozone3.33E-02
190GO:0006635: fatty acid beta-oxidation3.33E-02
191GO:0016032: viral process3.49E-02
192GO:0019761: glucosinolate biosynthetic process3.49E-02
193GO:0071281: cellular response to iron ion3.66E-02
194GO:0009828: plant-type cell wall loosening3.82E-02
195GO:0042128: nitrate assimilation4.68E-02
RankGO TermAdjusted P value
1GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
2GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
3GO:0050281: serine-glyoxylate transaminase activity0.00E+00
4GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
5GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
6GO:0043136: glycerol-3-phosphatase activity0.00E+00
7GO:0000121: glycerol-1-phosphatase activity0.00E+00
8GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
9GO:0016210: naringenin-chalcone synthase activity0.00E+00
10GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
11GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
12GO:0010276: phytol kinase activity0.00E+00
13GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
14GO:0009976: tocopherol cyclase activity0.00E+00
15GO:0015229: L-ascorbic acid transporter activity0.00E+00
16GO:0004760: serine-pyruvate transaminase activity0.00E+00
17GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
18GO:0042623: ATPase activity, coupled0.00E+00
19GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
20GO:0010486: manganese:proton antiporter activity0.00E+00
21GO:0050126: N-carbamoylputrescine amidase activity0.00E+00
22GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
23GO:0016168: chlorophyll binding1.81E-07
24GO:0031409: pigment binding4.31E-06
25GO:0052832: inositol monophosphate 3-phosphatase activity4.99E-06
26GO:0019156: isoamylase activity4.99E-06
27GO:0008934: inositol monophosphate 1-phosphatase activity4.99E-06
28GO:0052833: inositol monophosphate 4-phosphatase activity4.99E-06
29GO:0070402: NADPH binding1.77E-05
30GO:0016853: isomerase activity2.81E-05
31GO:0008453: alanine-glyoxylate transaminase activity6.97E-05
32GO:0004556: alpha-amylase activity1.58E-04
33GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.15E-04
34GO:0019899: enzyme binding2.80E-04
35GO:0010347: L-galactose-1-phosphate phosphatase activity3.32E-04
36GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.32E-04
37GO:0035671: enone reductase activity3.32E-04
38GO:0004425: indole-3-glycerol-phosphate synthase activity3.32E-04
39GO:0004451: isocitrate lyase activity3.32E-04
40GO:0047958: glycine:2-oxoglutarate aminotransferase activity3.32E-04
41GO:0004813: alanine-tRNA ligase activity3.32E-04
42GO:0042586: peptide deformylase activity3.32E-04
43GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity3.32E-04
44GO:0004830: tryptophan-tRNA ligase activity3.32E-04
45GO:0008047: enzyme activator activity7.14E-04
46GO:0047746: chlorophyllase activity7.24E-04
47GO:0009977: proton motive force dependent protein transmembrane transporter activity7.24E-04
48GO:0004829: threonine-tRNA ligase activity7.24E-04
49GO:0019172: glyoxalase III activity7.24E-04
50GO:0004826: phenylalanine-tRNA ligase activity7.24E-04
51GO:0000234: phosphoethanolamine N-methyltransferase activity7.24E-04
52GO:0003862: 3-isopropylmalate dehydrogenase activity7.24E-04
53GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity7.24E-04
54GO:0000049: tRNA binding9.39E-04
55GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.17E-03
56GO:0010277: chlorophyllide a oxygenase [overall] activity1.17E-03
57GO:0003913: DNA photolyase activity1.17E-03
58GO:0050307: sucrose-phosphate phosphatase activity1.17E-03
59GO:0004148: dihydrolipoyl dehydrogenase activity1.17E-03
60GO:0004751: ribose-5-phosphate isomerase activity1.17E-03
61GO:0030267: glyoxylate reductase (NADP) activity1.17E-03
62GO:0005528: FK506 binding1.65E-03
63GO:0035529: NADH pyrophosphatase activity1.68E-03
64GO:0004792: thiosulfate sulfurtransferase activity1.68E-03
65GO:0016149: translation release factor activity, codon specific1.68E-03
66GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.68E-03
67GO:0016851: magnesium chelatase activity1.68E-03
68GO:0004364: glutathione transferase activity1.85E-03
69GO:0051537: 2 iron, 2 sulfur cluster binding2.15E-03
70GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.26E-03
71GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.26E-03
72GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor2.26E-03
73GO:0043495: protein anchor2.26E-03
74GO:0022891: substrate-specific transmembrane transporter activity2.38E-03
75GO:0051287: NAD binding2.49E-03
76GO:0009055: electron carrier activity2.56E-03
77GO:0046872: metal ion binding2.70E-03
78GO:0047134: protein-disulfide reductase activity2.80E-03
79GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.89E-03
80GO:0003785: actin monomer binding2.89E-03
81GO:0008080: N-acetyltransferase activity3.26E-03
82GO:0004791: thioredoxin-disulfide reductase activity3.51E-03
83GO:0004605: phosphatidate cytidylyltransferase activity3.57E-03
84GO:0004332: fructose-bisphosphate aldolase activity3.57E-03
85GO:0004462: lactoylglutathione lyase activity3.57E-03
86GO:0016462: pyrophosphatase activity3.57E-03
87GO:0000293: ferric-chelate reductase activity3.57E-03
88GO:0016491: oxidoreductase activity4.06E-03
89GO:0004559: alpha-mannosidase activity4.30E-03
90GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.30E-03
91GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.30E-03
92GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.59E-03
93GO:0015035: protein disulfide oxidoreductase activity4.64E-03
94GO:0009881: photoreceptor activity5.07E-03
95GO:0004033: aldo-keto reductase (NADP) activity5.89E-03
96GO:0019843: rRNA binding5.95E-03
97GO:0008135: translation factor activity, RNA binding6.76E-03
98GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity6.76E-03
99GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism7.67E-03
100GO:0003747: translation release factor activity7.67E-03
101GO:0045309: protein phosphorylated amino acid binding8.61E-03
102GO:0005384: manganese ion transmembrane transporter activity8.61E-03
103GO:0003746: translation elongation factor activity9.66E-03
104GO:0005089: Rho guanyl-nucleotide exchange factor activity1.06E-02
105GO:0019904: protein domain specific binding1.06E-02
106GO:0003743: translation initiation factor activity1.09E-02
107GO:0004089: carbonate dehydratase activity1.28E-02
108GO:0031072: heat shock protein binding1.28E-02
109GO:0008081: phosphoric diester hydrolase activity1.28E-02
110GO:0005315: inorganic phosphate transmembrane transporter activity1.28E-02
111GO:0005198: structural molecule activity1.40E-02
112GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.46E-02
113GO:0016887: ATPase activity1.73E-02
114GO:0004857: enzyme inhibitor activity1.76E-02
115GO:0005345: purine nucleobase transmembrane transporter activity1.89E-02
116GO:0008324: cation transmembrane transporter activity1.89E-02
117GO:0004176: ATP-dependent peptidase activity2.02E-02
118GO:0003779: actin binding2.33E-02
119GO:0008514: organic anion transmembrane transporter activity2.43E-02
120GO:0003727: single-stranded RNA binding2.43E-02
121GO:0004812: aminoacyl-tRNA ligase activity2.57E-02
122GO:0048038: quinone binding3.33E-02
123GO:0003924: GTPase activity3.34E-02
124GO:0008565: protein transporter activity3.60E-02
125GO:0008483: transaminase activity3.99E-02
126GO:0016597: amino acid binding4.16E-02
127GO:0015250: water channel activity4.33E-02
128GO:0005525: GTP binding4.38E-02
RankGO TermAdjusted P value
1GO:0010368: chloroplast isoamylase complex0.00E+00
2GO:0009515: granal stacked thylakoid0.00E+00
3GO:0009349: riboflavin synthase complex0.00E+00
4GO:0009507: chloroplast1.70E-66
5GO:0009535: chloroplast thylakoid membrane1.06E-38
6GO:0009534: chloroplast thylakoid1.54E-27
7GO:0009570: chloroplast stroma5.27E-24
8GO:0009941: chloroplast envelope3.92E-23
9GO:0009579: thylakoid6.60E-17
10GO:0010287: plastoglobule2.25E-13
11GO:0009523: photosystem II3.52E-08
12GO:0009543: chloroplast thylakoid lumen9.96E-08
13GO:0031977: thylakoid lumen1.31E-06
14GO:0009538: photosystem I reaction center1.02E-05
15GO:0033281: TAT protein transport complex1.77E-05
16GO:0009517: PSII associated light-harvesting complex II6.97E-05
17GO:0030076: light-harvesting complex9.89E-05
18GO:0009654: photosystem II oxygen evolving complex1.57E-04
19GO:0042651: thylakoid membrane1.57E-04
20GO:0009782: photosystem I antenna complex3.32E-04
21GO:0009522: photosystem I3.93E-04
22GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.18E-04
23GO:0008290: F-actin capping protein complex7.24E-04
24GO:0009706: chloroplast inner membrane8.00E-04
25GO:0010007: magnesium chelatase complex1.17E-03
26GO:0030095: chloroplast photosystem II1.19E-03
27GO:0030286: dynein complex2.26E-03
28GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)2.26E-03
29GO:0005851: eukaryotic translation initiation factor 2B complex3.57E-03
30GO:0019898: extrinsic component of membrane3.76E-03
31GO:0009295: nucleoid5.19E-03
32GO:0005778: peroxisomal membrane5.19E-03
33GO:0048046: apoplast5.90E-03
34GO:0009539: photosystem II reaction center6.76E-03
35GO:0009707: chloroplast outer membrane7.61E-03
36GO:0042644: chloroplast nucleoid7.67E-03
37GO:0005759: mitochondrial matrix7.96E-03
38GO:0012511: monolayer-surrounded lipid storage body1.06E-02
39GO:0032040: small-subunit processome1.17E-02
40GO:0016020: membrane1.27E-02
41GO:0005578: proteinaceous extracellular matrix1.28E-02
42GO:0009508: plastid chromosome1.28E-02
43GO:0005938: cell cortex1.28E-02
44GO:0045271: respiratory chain complex I1.89E-02
45GO:0031969: chloroplast membrane2.05E-02
46GO:0005747: mitochondrial respiratory chain complex I2.06E-02
47GO:0015629: actin cytoskeleton2.29E-02
48GO:0005770: late endosome2.87E-02
49GO:0005623: cell3.09E-02
50GO:0010319: stromule3.99E-02
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Gene type



Gene DE type