GO Enrichment Analysis of Co-expressed Genes with
AT3G57000
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0080180: 2-methylguanosine metabolic process | 0.00E+00 |
| 2 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 3 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 4 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 5 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 6 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 7 | GO:0006364: rRNA processing | 9.80E-16 |
| 8 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.47E-07 |
| 9 | GO:0042273: ribosomal large subunit biogenesis | 7.70E-06 |
| 10 | GO:0010501: RNA secondary structure unwinding | 2.24E-05 |
| 11 | GO:0009553: embryo sac development | 3.43E-05 |
| 12 | GO:0031120: snRNA pseudouridine synthesis | 9.14E-05 |
| 13 | GO:0000469: cleavage involved in rRNA processing | 9.14E-05 |
| 14 | GO:0031118: rRNA pseudouridine synthesis | 9.14E-05 |
| 15 | GO:0030490: maturation of SSU-rRNA | 9.14E-05 |
| 16 | GO:0043985: histone H4-R3 methylation | 9.14E-05 |
| 17 | GO:0010162: seed dormancy process | 1.13E-04 |
| 18 | GO:0080009: mRNA methylation | 2.16E-04 |
| 19 | GO:0045041: protein import into mitochondrial intermembrane space | 2.16E-04 |
| 20 | GO:0034470: ncRNA processing | 2.16E-04 |
| 21 | GO:0009944: polarity specification of adaxial/abaxial axis | 2.85E-04 |
| 22 | GO:0045039: protein import into mitochondrial inner membrane | 3.61E-04 |
| 23 | GO:0045604: regulation of epidermal cell differentiation | 3.61E-04 |
| 24 | GO:0007005: mitochondrion organization | 3.80E-04 |
| 25 | GO:0009294: DNA mediated transformation | 4.15E-04 |
| 26 | GO:0007276: gamete generation | 5.20E-04 |
| 27 | GO:0009855: determination of bilateral symmetry | 5.20E-04 |
| 28 | GO:0051131: chaperone-mediated protein complex assembly | 5.20E-04 |
| 29 | GO:0000460: maturation of 5.8S rRNA | 6.90E-04 |
| 30 | GO:0006479: protein methylation | 6.90E-04 |
| 31 | GO:1900864: mitochondrial RNA modification | 6.90E-04 |
| 32 | GO:0046345: abscisic acid catabolic process | 6.90E-04 |
| 33 | GO:0000380: alternative mRNA splicing, via spliceosome | 8.73E-04 |
| 34 | GO:0009451: RNA modification | 9.31E-04 |
| 35 | GO:0000470: maturation of LSU-rRNA | 1.07E-03 |
| 36 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 1.07E-03 |
| 37 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.27E-03 |
| 38 | GO:0006458: 'de novo' protein folding | 1.27E-03 |
| 39 | GO:0048444: floral organ morphogenesis | 1.27E-03 |
| 40 | GO:0010077: maintenance of inflorescence meristem identity | 1.27E-03 |
| 41 | GO:0042026: protein refolding | 1.27E-03 |
| 42 | GO:0006412: translation | 1.45E-03 |
| 43 | GO:0006400: tRNA modification | 1.49E-03 |
| 44 | GO:0045995: regulation of embryonic development | 1.49E-03 |
| 45 | GO:0080186: developmental vegetative growth | 1.49E-03 |
| 46 | GO:0042254: ribosome biogenesis | 1.59E-03 |
| 47 | GO:2000024: regulation of leaf development | 2.21E-03 |
| 48 | GO:0000387: spliceosomal snRNP assembly | 2.48E-03 |
| 49 | GO:1900865: chloroplast RNA modification | 2.48E-03 |
| 50 | GO:0010582: floral meristem determinacy | 3.32E-03 |
| 51 | GO:0006626: protein targeting to mitochondrion | 3.63E-03 |
| 52 | GO:0010030: positive regulation of seed germination | 4.26E-03 |
| 53 | GO:0051302: regulation of cell division | 5.27E-03 |
| 54 | GO:0061077: chaperone-mediated protein folding | 5.62E-03 |
| 55 | GO:0009561: megagametogenesis | 6.73E-03 |
| 56 | GO:0070417: cellular response to cold | 7.11E-03 |
| 57 | GO:0000413: protein peptidyl-prolyl isomerization | 7.51E-03 |
| 58 | GO:0046686: response to cadmium ion | 7.61E-03 |
| 59 | GO:0010197: polar nucleus fusion | 7.91E-03 |
| 60 | GO:0009960: endosperm development | 7.91E-03 |
| 61 | GO:0048825: cotyledon development | 8.74E-03 |
| 62 | GO:0006457: protein folding | 9.57E-03 |
| 63 | GO:0016049: cell growth | 1.38E-02 |
| 64 | GO:0045892: negative regulation of transcription, DNA-templated | 1.57E-02 |
| 65 | GO:0048527: lateral root development | 1.59E-02 |
| 66 | GO:0032259: methylation | 1.83E-02 |
| 67 | GO:0000154: rRNA modification | 2.20E-02 |
| 68 | GO:0006417: regulation of translation | 2.70E-02 |
| 69 | GO:0016569: covalent chromatin modification | 3.09E-02 |
| 70 | GO:0006396: RNA processing | 3.29E-02 |
| 71 | GO:0009555: pollen development | 3.38E-02 |
| 72 | GO:0000398: mRNA splicing, via spliceosome | 3.57E-02 |
| 73 | GO:0009790: embryo development | 4.22E-02 |
| 74 | GO:0009793: embryo development ending in seed dormancy | 4.79E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 2 | GO:0003723: RNA binding | 1.39E-16 |
| 3 | GO:0000166: nucleotide binding | 3.96E-10 |
| 4 | GO:0043021: ribonucleoprotein complex binding | 4.47E-07 |
| 5 | GO:0008026: ATP-dependent helicase activity | 1.83E-06 |
| 6 | GO:0004004: ATP-dependent RNA helicase activity | 2.68E-06 |
| 7 | GO:0030515: snoRNA binding | 3.77E-05 |
| 8 | GO:0042134: rRNA primary transcript binding | 9.14E-05 |
| 9 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 9.14E-05 |
| 10 | GO:0003735: structural constituent of ribosome | 1.59E-04 |
| 11 | GO:0004407: histone deacetylase activity | 2.85E-04 |
| 12 | GO:0070181: small ribosomal subunit rRNA binding | 3.61E-04 |
| 13 | GO:0004519: endonuclease activity | 6.41E-04 |
| 14 | GO:0008168: methyltransferase activity | 1.48E-03 |
| 15 | GO:0003746: translation elongation factor activity | 1.60E-03 |
| 16 | GO:0008173: RNA methyltransferase activity | 1.96E-03 |
| 17 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.75E-03 |
| 18 | GO:0001054: RNA polymerase I activity | 3.03E-03 |
| 19 | GO:0044183: protein binding involved in protein folding | 3.03E-03 |
| 20 | GO:0004521: endoribonuclease activity | 3.32E-03 |
| 21 | GO:0001056: RNA polymerase III activity | 3.32E-03 |
| 22 | GO:0000049: tRNA binding | 3.32E-03 |
| 23 | GO:0009982: pseudouridine synthase activity | 3.63E-03 |
| 24 | GO:0051082: unfolded protein binding | 3.89E-03 |
| 25 | GO:0019843: rRNA binding | 4.86E-03 |
| 26 | GO:0004527: exonuclease activity | 7.91E-03 |
| 27 | GO:0003676: nucleic acid binding | 1.02E-02 |
| 28 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.38E-02 |
| 29 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.43E-02 |
| 30 | GO:0050897: cobalt ion binding | 1.59E-02 |
| 31 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.75E-02 |
| 32 | GO:0003924: GTPase activity | 1.91E-02 |
| 33 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.26E-02 |
| 34 | GO:0003729: mRNA binding | 2.78E-02 |
| 35 | GO:0008565: protein transporter activity | 4.30E-02 |
| 36 | GO:0016787: hydrolase activity | 4.36E-02 |
| 37 | GO:0005507: copper ion binding | 4.79E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0034455: t-UTP complex | 0.00E+00 |
| 3 | GO:0036396: MIS complex | 0.00E+00 |
| 4 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 5 | GO:0005730: nucleolus | 1.19E-29 |
| 6 | GO:0032040: small-subunit processome | 2.35E-08 |
| 7 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 5.71E-08 |
| 8 | GO:0030687: preribosome, large subunit precursor | 2.71E-07 |
| 9 | GO:0005634: nucleus | 3.94E-07 |
| 10 | GO:0070545: PeBoW complex | 4.47E-07 |
| 11 | GO:0005834: heterotrimeric G-protein complex | 2.87E-05 |
| 12 | GO:0030688: preribosome, small subunit precursor | 9.14E-05 |
| 13 | GO:0031429: box H/ACA snoRNP complex | 5.20E-04 |
| 14 | GO:0005618: cell wall | 8.00E-04 |
| 15 | GO:0005759: mitochondrial matrix | 8.06E-04 |
| 16 | GO:0000178: exosome (RNase complex) | 8.73E-04 |
| 17 | GO:0005840: ribosome | 9.35E-04 |
| 18 | GO:0031428: box C/D snoRNP complex | 1.07E-03 |
| 19 | GO:0016363: nuclear matrix | 1.27E-03 |
| 20 | GO:0034399: nuclear periphery | 1.72E-03 |
| 21 | GO:0022625: cytosolic large ribosomal subunit | 2.17E-03 |
| 22 | GO:0005763: mitochondrial small ribosomal subunit | 2.21E-03 |
| 23 | GO:0005736: DNA-directed RNA polymerase I complex | 2.21E-03 |
| 24 | GO:0005666: DNA-directed RNA polymerase III complex | 2.48E-03 |
| 25 | GO:0015030: Cajal body | 2.48E-03 |
| 26 | GO:0005747: mitochondrial respiratory chain complex I | 3.34E-03 |
| 27 | GO:0019013: viral nucleocapsid | 3.63E-03 |
| 28 | GO:0005654: nucleoplasm | 4.73E-03 |
| 29 | GO:0005758: mitochondrial intermembrane space | 4.92E-03 |
| 30 | GO:0015935: small ribosomal subunit | 5.62E-03 |
| 31 | GO:0005739: mitochondrion | 7.48E-03 |
| 32 | GO:0005774: vacuolar membrane | 7.54E-03 |
| 33 | GO:0019898: extrinsic component of membrane | 8.74E-03 |
| 34 | GO:0022627: cytosolic small ribosomal subunit | 8.87E-03 |
| 35 | GO:0030529: intracellular ribonucleoprotein complex | 1.19E-02 |
| 36 | GO:0015934: large ribosomal subunit | 1.59E-02 |
| 37 | GO:0005743: mitochondrial inner membrane | 1.77E-02 |
| 38 | GO:0005829: cytosol | 2.62E-02 |
| 39 | GO:0005681: spliceosomal complex | 2.82E-02 |
| 40 | GO:0009506: plasmodesma | 2.87E-02 |
| 41 | GO:0016607: nuclear speck | 2.89E-02 |
| 42 | GO:0022626: cytosolic ribosome | 3.24E-02 |
| 43 | GO:0005732: small nucleolar ribonucleoprotein complex | 3.43E-02 |