GO Enrichment Analysis of Co-expressed Genes with
AT3G56650
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1905421: regulation of plant organ morphogenesis | 0.00E+00 |
| 2 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 3 | GO:0030155: regulation of cell adhesion | 0.00E+00 |
| 4 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 5 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 6 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 7 | GO:0015727: lactate transport | 0.00E+00 |
| 8 | GO:0032544: plastid translation | 1.28E-15 |
| 9 | GO:0015979: photosynthesis | 3.35E-14 |
| 10 | GO:0006412: translation | 3.62E-11 |
| 11 | GO:0010027: thylakoid membrane organization | 3.59E-07 |
| 12 | GO:0009658: chloroplast organization | 1.35E-05 |
| 13 | GO:0042254: ribosome biogenesis | 1.42E-05 |
| 14 | GO:0015995: chlorophyll biosynthetic process | 1.71E-05 |
| 15 | GO:0019464: glycine decarboxylation via glycine cleavage system | 2.30E-05 |
| 16 | GO:0009735: response to cytokinin | 3.14E-05 |
| 17 | GO:0061077: chaperone-mediated protein folding | 4.54E-05 |
| 18 | GO:0009409: response to cold | 1.26E-04 |
| 19 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 1.73E-04 |
| 20 | GO:0043953: protein transport by the Tat complex | 1.73E-04 |
| 21 | GO:0065002: intracellular protein transmembrane transport | 1.73E-04 |
| 22 | GO:0043007: maintenance of rDNA | 1.73E-04 |
| 23 | GO:1902458: positive regulation of stomatal opening | 1.73E-04 |
| 24 | GO:0009773: photosynthetic electron transport in photosystem I | 3.31E-04 |
| 25 | GO:0010541: acropetal auxin transport | 3.92E-04 |
| 26 | GO:0018026: peptidyl-lysine monomethylation | 3.92E-04 |
| 27 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 3.92E-04 |
| 28 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 3.92E-04 |
| 29 | GO:0048281: inflorescence morphogenesis | 6.40E-04 |
| 30 | GO:0006000: fructose metabolic process | 6.40E-04 |
| 31 | GO:0010160: formation of animal organ boundary | 6.40E-04 |
| 32 | GO:0016050: vesicle organization | 6.40E-04 |
| 33 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 9.13E-04 |
| 34 | GO:0010148: transpiration | 9.13E-04 |
| 35 | GO:0010731: protein glutathionylation | 9.13E-04 |
| 36 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 9.13E-04 |
| 37 | GO:0042742: defense response to bacterium | 1.07E-03 |
| 38 | GO:0006109: regulation of carbohydrate metabolic process | 1.21E-03 |
| 39 | GO:0045727: positive regulation of translation | 1.21E-03 |
| 40 | GO:0006552: leucine catabolic process | 1.21E-03 |
| 41 | GO:0006546: glycine catabolic process | 1.21E-03 |
| 42 | GO:0006808: regulation of nitrogen utilization | 1.21E-03 |
| 43 | GO:0015976: carbon utilization | 1.21E-03 |
| 44 | GO:0000304: response to singlet oxygen | 1.54E-03 |
| 45 | GO:0010236: plastoquinone biosynthetic process | 1.54E-03 |
| 46 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.54E-03 |
| 47 | GO:0000470: maturation of LSU-rRNA | 1.89E-03 |
| 48 | GO:0060918: auxin transport | 1.89E-03 |
| 49 | GO:0010190: cytochrome b6f complex assembly | 1.89E-03 |
| 50 | GO:0009955: adaxial/abaxial pattern specification | 2.27E-03 |
| 51 | GO:1901259: chloroplast rRNA processing | 2.27E-03 |
| 52 | GO:0006810: transport | 2.30E-03 |
| 53 | GO:0070370: cellular heat acclimation | 2.67E-03 |
| 54 | GO:0009645: response to low light intensity stimulus | 2.67E-03 |
| 55 | GO:0022904: respiratory electron transport chain | 2.67E-03 |
| 56 | GO:0010103: stomatal complex morphogenesis | 2.67E-03 |
| 57 | GO:0006353: DNA-templated transcription, termination | 3.09E-03 |
| 58 | GO:2000070: regulation of response to water deprivation | 3.09E-03 |
| 59 | GO:0006002: fructose 6-phosphate metabolic process | 3.54E-03 |
| 60 | GO:0015996: chlorophyll catabolic process | 3.54E-03 |
| 61 | GO:0007186: G-protein coupled receptor signaling pathway | 3.54E-03 |
| 62 | GO:0001558: regulation of cell growth | 3.54E-03 |
| 63 | GO:0006783: heme biosynthetic process | 4.00E-03 |
| 64 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.99E-03 |
| 65 | GO:0006415: translational termination | 5.52E-03 |
| 66 | GO:0019684: photosynthesis, light reaction | 5.52E-03 |
| 67 | GO:0009089: lysine biosynthetic process via diaminopimelate | 5.52E-03 |
| 68 | GO:0009073: aromatic amino acid family biosynthetic process | 5.52E-03 |
| 69 | GO:0043085: positive regulation of catalytic activity | 5.52E-03 |
| 70 | GO:0000272: polysaccharide catabolic process | 5.52E-03 |
| 71 | GO:0009750: response to fructose | 5.52E-03 |
| 72 | GO:0018119: peptidyl-cysteine S-nitrosylation | 5.52E-03 |
| 73 | GO:0010015: root morphogenesis | 5.52E-03 |
| 74 | GO:0008361: regulation of cell size | 6.06E-03 |
| 75 | GO:0005983: starch catabolic process | 6.06E-03 |
| 76 | GO:0045037: protein import into chloroplast stroma | 6.06E-03 |
| 77 | GO:0005986: sucrose biosynthetic process | 6.61E-03 |
| 78 | GO:0006094: gluconeogenesis | 6.61E-03 |
| 79 | GO:0009767: photosynthetic electron transport chain | 6.61E-03 |
| 80 | GO:0006302: double-strand break repair | 7.20E-03 |
| 81 | GO:0010020: chloroplast fission | 7.20E-03 |
| 82 | GO:0010207: photosystem II assembly | 7.20E-03 |
| 83 | GO:0010540: basipetal auxin transport | 7.20E-03 |
| 84 | GO:0009944: polarity specification of adaxial/abaxial axis | 9.03E-03 |
| 85 | GO:0006289: nucleotide-excision repair | 9.03E-03 |
| 86 | GO:0009768: photosynthesis, light harvesting in photosystem I | 9.69E-03 |
| 87 | GO:0051302: regulation of cell division | 9.69E-03 |
| 88 | GO:0019915: lipid storage | 1.03E-02 |
| 89 | GO:0031408: oxylipin biosynthetic process | 1.03E-02 |
| 90 | GO:0051321: meiotic cell cycle | 1.03E-02 |
| 91 | GO:0009686: gibberellin biosynthetic process | 1.17E-02 |
| 92 | GO:0001944: vasculature development | 1.17E-02 |
| 93 | GO:0048443: stamen development | 1.24E-02 |
| 94 | GO:0006284: base-excision repair | 1.24E-02 |
| 95 | GO:0016117: carotenoid biosynthetic process | 1.32E-02 |
| 96 | GO:0009790: embryo development | 1.37E-02 |
| 97 | GO:0042631: cellular response to water deprivation | 1.39E-02 |
| 98 | GO:0009958: positive gravitropism | 1.47E-02 |
| 99 | GO:0006662: glycerol ether metabolic process | 1.47E-02 |
| 100 | GO:0010182: sugar mediated signaling pathway | 1.47E-02 |
| 101 | GO:0009646: response to absence of light | 1.54E-02 |
| 102 | GO:0002229: defense response to oomycetes | 1.70E-02 |
| 103 | GO:0009639: response to red or far red light | 1.95E-02 |
| 104 | GO:0009567: double fertilization forming a zygote and endosperm | 1.95E-02 |
| 105 | GO:0001666: response to hypoxia | 2.21E-02 |
| 106 | GO:0009627: systemic acquired resistance | 2.39E-02 |
| 107 | GO:0016311: dephosphorylation | 2.58E-02 |
| 108 | GO:0009817: defense response to fungus, incompatible interaction | 2.67E-02 |
| 109 | GO:0018298: protein-chromophore linkage | 2.67E-02 |
| 110 | GO:0009813: flavonoid biosynthetic process | 2.77E-02 |
| 111 | GO:0006499: N-terminal protein myristoylation | 2.87E-02 |
| 112 | GO:0010218: response to far red light | 2.87E-02 |
| 113 | GO:0048527: lateral root development | 2.96E-02 |
| 114 | GO:0009853: photorespiration | 3.16E-02 |
| 115 | GO:0009637: response to blue light | 3.16E-02 |
| 116 | GO:0034599: cellular response to oxidative stress | 3.27E-02 |
| 117 | GO:0006631: fatty acid metabolic process | 3.58E-02 |
| 118 | GO:0045454: cell redox homeostasis | 3.72E-02 |
| 119 | GO:0009640: photomorphogenesis | 3.79E-02 |
| 120 | GO:0009926: auxin polar transport | 3.79E-02 |
| 121 | GO:0009644: response to high light intensity | 4.01E-02 |
| 122 | GO:0009965: leaf morphogenesis | 4.12E-02 |
| 123 | GO:0009664: plant-type cell wall organization | 4.45E-02 |
| 124 | GO:0006281: DNA repair | 4.57E-02 |
| 125 | GO:0006364: rRNA processing | 4.68E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010356: homogentisate geranylgeranyltransferase activity | 0.00E+00 |
| 2 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 3 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 4 | GO:0004174: electron-transferring-flavoprotein dehydrogenase activity | 0.00E+00 |
| 5 | GO:0010357: homogentisate solanesyltransferase activity | 0.00E+00 |
| 6 | GO:0048039: ubiquinone binding | 0.00E+00 |
| 7 | GO:0009899: ent-kaurene synthase activity | 0.00E+00 |
| 8 | GO:0010355: homogentisate farnesyltransferase activity | 0.00E+00 |
| 9 | GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor | 0.00E+00 |
| 10 | GO:0015129: lactate transmembrane transporter activity | 0.00E+00 |
| 11 | GO:0019843: rRNA binding | 3.95E-19 |
| 12 | GO:0003735: structural constituent of ribosome | 1.91E-12 |
| 13 | GO:0005528: FK506 binding | 9.30E-09 |
| 14 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.16E-06 |
| 15 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 1.24E-05 |
| 16 | GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity | 1.73E-04 |
| 17 | GO:0004853: uroporphyrinogen decarboxylase activity | 1.73E-04 |
| 18 | GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity | 1.73E-04 |
| 19 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 1.73E-04 |
| 20 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 3.92E-04 |
| 21 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 3.92E-04 |
| 22 | GO:0016868: intramolecular transferase activity, phosphotransferases | 3.92E-04 |
| 23 | GO:0010297: heteropolysaccharide binding | 3.92E-04 |
| 24 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 3.92E-04 |
| 25 | GO:0017150: tRNA dihydrouridine synthase activity | 6.40E-04 |
| 26 | GO:0005504: fatty acid binding | 6.40E-04 |
| 27 | GO:0045174: glutathione dehydrogenase (ascorbate) activity | 6.40E-04 |
| 28 | GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups | 6.40E-04 |
| 29 | GO:0004324: ferredoxin-NADP+ reductase activity | 6.40E-04 |
| 30 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 9.13E-04 |
| 31 | GO:0016851: magnesium chelatase activity | 9.13E-04 |
| 32 | GO:0016149: translation release factor activity, codon specific | 9.13E-04 |
| 33 | GO:0043023: ribosomal large subunit binding | 9.13E-04 |
| 34 | GO:0019199: transmembrane receptor protein kinase activity | 1.21E-03 |
| 35 | GO:0045430: chalcone isomerase activity | 1.21E-03 |
| 36 | GO:0042277: peptide binding | 1.21E-03 |
| 37 | GO:0016279: protein-lysine N-methyltransferase activity | 1.21E-03 |
| 38 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.21E-03 |
| 39 | GO:0050662: coenzyme binding | 1.40E-03 |
| 40 | GO:0003959: NADPH dehydrogenase activity | 1.54E-03 |
| 41 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.54E-03 |
| 42 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.27E-03 |
| 43 | GO:0051920: peroxiredoxin activity | 2.27E-03 |
| 44 | GO:0004033: aldo-keto reductase (NADP) activity | 3.09E-03 |
| 45 | GO:0016209: antioxidant activity | 3.09E-03 |
| 46 | GO:0003747: translation release factor activity | 4.00E-03 |
| 47 | GO:0008047: enzyme activator activity | 4.99E-03 |
| 48 | GO:0044183: protein binding involved in protein folding | 5.52E-03 |
| 49 | GO:0004161: dimethylallyltranstransferase activity | 5.52E-03 |
| 50 | GO:0010329: auxin efflux transmembrane transporter activity | 6.61E-03 |
| 51 | GO:0004089: carbonate dehydratase activity | 6.61E-03 |
| 52 | GO:0031072: heat shock protein binding | 6.61E-03 |
| 53 | GO:0008266: poly(U) RNA binding | 7.20E-03 |
| 54 | GO:0031409: pigment binding | 8.41E-03 |
| 55 | GO:0004857: enzyme inhibitor activity | 9.03E-03 |
| 56 | GO:0051082: unfolded protein binding | 9.33E-03 |
| 57 | GO:0008408: 3'-5' exonuclease activity | 1.03E-02 |
| 58 | GO:0030570: pectate lyase activity | 1.17E-02 |
| 59 | GO:0005509: calcium ion binding | 1.31E-02 |
| 60 | GO:0047134: protein-disulfide reductase activity | 1.32E-02 |
| 61 | GO:0004791: thioredoxin-disulfide reductase activity | 1.54E-02 |
| 62 | GO:0048038: quinone binding | 1.70E-02 |
| 63 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.87E-02 |
| 64 | GO:0015250: water channel activity | 2.21E-02 |
| 65 | GO:0016491: oxidoreductase activity | 2.23E-02 |
| 66 | GO:0016168: chlorophyll binding | 2.30E-02 |
| 67 | GO:0003723: RNA binding | 2.35E-02 |
| 68 | GO:0000287: magnesium ion binding | 2.46E-02 |
| 69 | GO:0030145: manganese ion binding | 2.96E-02 |
| 70 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.47E-02 |
| 71 | GO:0004364: glutathione transferase activity | 3.68E-02 |
| 72 | GO:0009055: electron carrier activity | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 2 | GO:0017133: mitochondrial electron transfer flavoprotein complex | 0.00E+00 |
| 3 | GO:0043235: receptor complex | 0.00E+00 |
| 4 | GO:0009507: chloroplast | 3.72E-57 |
| 5 | GO:0009941: chloroplast envelope | 6.69E-43 |
| 6 | GO:0009570: chloroplast stroma | 3.81E-37 |
| 7 | GO:0009535: chloroplast thylakoid membrane | 1.47E-35 |
| 8 | GO:0009534: chloroplast thylakoid | 1.03E-31 |
| 9 | GO:0009579: thylakoid | 1.98E-25 |
| 10 | GO:0009543: chloroplast thylakoid lumen | 2.16E-17 |
| 11 | GO:0005840: ribosome | 2.09E-13 |
| 12 | GO:0031977: thylakoid lumen | 7.42E-13 |
| 13 | GO:0009538: photosystem I reaction center | 1.38E-08 |
| 14 | GO:0010287: plastoglobule | 5.16E-08 |
| 15 | GO:0030095: chloroplast photosystem II | 3.20E-07 |
| 16 | GO:0009654: photosystem II oxygen evolving complex | 8.85E-07 |
| 17 | GO:0019898: extrinsic component of membrane | 4.72E-06 |
| 18 | GO:0010319: stromule | 9.48E-06 |
| 19 | GO:0005960: glycine cleavage complex | 1.24E-05 |
| 20 | GO:0009536: plastid | 1.57E-05 |
| 21 | GO:0009782: photosystem I antenna complex | 1.73E-04 |
| 22 | GO:0000791: euchromatin | 1.73E-04 |
| 23 | GO:0031361: integral component of thylakoid membrane | 1.73E-04 |
| 24 | GO:0009706: chloroplast inner membrane | 1.80E-04 |
| 25 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 2.02E-04 |
| 26 | GO:0030870: Mre11 complex | 3.92E-04 |
| 27 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 3.92E-04 |
| 28 | GO:0009528: plastid inner membrane | 6.40E-04 |
| 29 | GO:0010007: magnesium chelatase complex | 6.40E-04 |
| 30 | GO:0033281: TAT protein transport complex | 6.40E-04 |
| 31 | GO:0015935: small ribosomal subunit | 8.10E-04 |
| 32 | GO:0009532: plastid stroma | 8.10E-04 |
| 33 | GO:0009527: plastid outer membrane | 1.21E-03 |
| 34 | GO:0000795: synaptonemal complex | 1.54E-03 |
| 35 | GO:0016020: membrane | 1.87E-03 |
| 36 | GO:0009295: nucleoid | 2.05E-03 |
| 37 | GO:0009840: chloroplastic endopeptidase Clp complex | 2.27E-03 |
| 38 | GO:0016272: prefoldin complex | 2.27E-03 |
| 39 | GO:0031305: integral component of mitochondrial inner membrane | 3.09E-03 |
| 40 | GO:0015934: large ribosomal subunit | 3.45E-03 |
| 41 | GO:0005763: mitochondrial small ribosomal subunit | 4.00E-03 |
| 42 | GO:0048046: apoplast | 4.66E-03 |
| 43 | GO:0005740: mitochondrial envelope | 4.99E-03 |
| 44 | GO:0031969: chloroplast membrane | 6.20E-03 |
| 45 | GO:0009508: plastid chromosome | 6.61E-03 |
| 46 | GO:0000312: plastid small ribosomal subunit | 7.20E-03 |
| 47 | GO:0030076: light-harvesting complex | 7.79E-03 |
| 48 | GO:0043234: protein complex | 8.41E-03 |
| 49 | GO:0042651: thylakoid membrane | 9.69E-03 |
| 50 | GO:0009522: photosystem I | 1.54E-02 |
| 51 | GO:0009523: photosystem II | 1.62E-02 |
| 52 | GO:0000785: chromatin | 1.78E-02 |
| 53 | GO:0009707: chloroplast outer membrane | 2.67E-02 |
| 54 | GO:0022625: cytosolic large ribosomal subunit | 3.27E-02 |