Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G56630

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010336: gibberellic acid homeostasis0.00E+00
2GO:0045747: positive regulation of Notch signaling pathway0.00E+00
3GO:0071000: response to magnetism0.00E+00
4GO:0046460: neutral lipid biosynthetic process0.00E+00
5GO:0009583: detection of light stimulus0.00E+00
6GO:0090470: shoot organ boundary specification0.00E+00
7GO:0032928: regulation of superoxide anion generation0.00E+00
8GO:0016576: histone dephosphorylation0.00E+00
9GO:0046294: formaldehyde catabolic process0.00E+00
10GO:0036172: thiamine salvage0.00E+00
11GO:0048856: anatomical structure development0.00E+00
12GO:0006720: isoprenoid metabolic process0.00E+00
13GO:0071244: cellular response to carbon dioxide0.00E+00
14GO:0033317: pantothenate biosynthetic process from valine0.00E+00
15GO:0006482: protein demethylation0.00E+00
16GO:0010343: singlet oxygen-mediated programmed cell death6.85E-06
17GO:0010117: photoprotection1.43E-04
18GO:0046283: anthocyanin-containing compound metabolic process1.43E-04
19GO:0006567: threonine catabolic process3.92E-04
20GO:0034970: histone H3-R2 methylation3.92E-04
21GO:0016487: farnesol metabolic process3.92E-04
22GO:0034972: histone H3-R26 methylation3.92E-04
23GO:1902265: abscisic acid homeostasis3.92E-04
24GO:0034971: histone H3-R17 methylation3.92E-04
25GO:0072387: flavin adenine dinucleotide metabolic process3.92E-04
26GO:0071461: cellular response to redox state3.92E-04
27GO:0080065: 4-alpha-methyl-delta7-sterol oxidation3.92E-04
28GO:0009787: regulation of abscisic acid-activated signaling pathway4.48E-04
29GO:0055114: oxidation-reduction process5.23E-04
30GO:0010275: NAD(P)H dehydrogenase complex assembly8.49E-04
31GO:1901529: positive regulation of anion channel activity8.49E-04
32GO:0080005: photosystem stoichiometry adjustment8.49E-04
33GO:0010617: circadian regulation of calcium ion oscillation8.49E-04
34GO:2000030: regulation of response to red or far red light8.49E-04
35GO:0007154: cell communication8.49E-04
36GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation8.49E-04
37GO:0099402: plant organ development8.49E-04
38GO:0019441: tryptophan catabolic process to kynurenine8.49E-04
39GO:2000071: regulation of defense response by callose deposition8.49E-04
40GO:0035335: peptidyl-tyrosine dephosphorylation8.49E-04
41GO:0016122: xanthophyll metabolic process8.49E-04
42GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine8.49E-04
43GO:0009658: chloroplast organization1.20E-03
44GO:0009767: photosynthetic electron transport chain1.34E-03
45GO:0031022: nuclear migration along microfilament1.38E-03
46GO:1902448: positive regulation of shade avoidance1.38E-03
47GO:0006013: mannose metabolic process1.38E-03
48GO:1901672: positive regulation of systemic acquired resistance1.38E-03
49GO:0009150: purine ribonucleotide metabolic process1.38E-03
50GO:0015940: pantothenate biosynthetic process1.38E-03
51GO:0071492: cellular response to UV-A1.38E-03
52GO:0006696: ergosterol biosynthetic process1.38E-03
53GO:0071836: nectar secretion1.38E-03
54GO:0044375: regulation of peroxisome size1.38E-03
55GO:0045739: positive regulation of DNA repair1.38E-03
56GO:0010476: gibberellin mediated signaling pathway1.38E-03
57GO:0010325: raffinose family oligosaccharide biosynthetic process1.38E-03
58GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation1.38E-03
59GO:0009647: skotomorphogenesis1.99E-03
60GO:0033014: tetrapyrrole biosynthetic process1.99E-03
61GO:1901332: negative regulation of lateral root development1.99E-03
62GO:0009399: nitrogen fixation1.99E-03
63GO:0050482: arachidonic acid secretion1.99E-03
64GO:0009963: positive regulation of flavonoid biosynthetic process1.99E-03
65GO:0006882: cellular zinc ion homeostasis1.99E-03
66GO:2001141: regulation of RNA biosynthetic process1.99E-03
67GO:0010371: regulation of gibberellin biosynthetic process1.99E-03
68GO:0009640: photomorphogenesis2.66E-03
69GO:0042274: ribosomal small subunit biogenesis2.67E-03
70GO:0009765: photosynthesis, light harvesting2.67E-03
71GO:0071585: detoxification of cadmium ion2.67E-03
72GO:0006221: pyrimidine nucleotide biosynthetic process2.67E-03
73GO:0006552: leucine catabolic process2.67E-03
74GO:0009649: entrainment of circadian clock2.67E-03
75GO:1902347: response to strigolactone2.67E-03
76GO:0009902: chloroplast relocation2.67E-03
77GO:0034613: cellular protein localization2.67E-03
78GO:0006542: glutamine biosynthetic process2.67E-03
79GO:0070534: protein K63-linked ubiquitination2.67E-03
80GO:0006545: glycine biosynthetic process2.67E-03
81GO:0071486: cellular response to high light intensity2.67E-03
82GO:0009939: positive regulation of gibberellic acid mediated signaling pathway2.67E-03
83GO:0016226: iron-sulfur cluster assembly2.78E-03
84GO:0000304: response to singlet oxygen3.42E-03
85GO:0071423: malate transmembrane transport3.42E-03
86GO:0016120: carotene biosynthetic process3.42E-03
87GO:0010236: plastoquinone biosynthetic process3.42E-03
88GO:0009229: thiamine diphosphate biosynthetic process3.42E-03
89GO:0016117: carotenoid biosynthetic process3.58E-03
90GO:0010118: stomatal movement3.87E-03
91GO:0006520: cellular amino acid metabolic process4.17E-03
92GO:0006555: methionine metabolic process4.23E-03
93GO:0060918: auxin transport4.23E-03
94GO:1902456: regulation of stomatal opening4.23E-03
95GO:0031053: primary miRNA processing4.23E-03
96GO:0010190: cytochrome b6f complex assembly4.23E-03
97GO:0009117: nucleotide metabolic process4.23E-03
98GO:1901371: regulation of leaf morphogenesis4.23E-03
99GO:0007035: vacuolar acidification4.23E-03
100GO:0009228: thiamine biosynthetic process4.23E-03
101GO:0006301: postreplication repair4.23E-03
102GO:0010304: PSII associated light-harvesting complex II catabolic process4.23E-03
103GO:0016070: RNA metabolic process4.23E-03
104GO:0019509: L-methionine salvage from methylthioadenosine5.09E-03
105GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.09E-03
106GO:0010016: shoot system morphogenesis5.09E-03
107GO:0034389: lipid particle organization5.09E-03
108GO:0009903: chloroplast avoidance movement5.09E-03
109GO:0010189: vitamin E biosynthetic process5.09E-03
110GO:0010019: chloroplast-nucleus signaling pathway5.09E-03
111GO:0048444: floral organ morphogenesis5.09E-03
112GO:0010310: regulation of hydrogen peroxide metabolic process5.09E-03
113GO:1900056: negative regulation of leaf senescence6.02E-03
114GO:0030026: cellular manganese ion homeostasis6.02E-03
115GO:0051510: regulation of unidimensional cell growth6.02E-03
116GO:0010038: response to metal ion6.02E-03
117GO:0050790: regulation of catalytic activity6.02E-03
118GO:0071805: potassium ion transmembrane transport6.64E-03
119GO:0048564: photosystem I assembly7.00E-03
120GO:0045292: mRNA cis splicing, via spliceosome7.00E-03
121GO:0030091: protein repair7.00E-03
122GO:0009704: de-etiolation7.00E-03
123GO:0006102: isocitrate metabolic process7.00E-03
124GO:0016559: peroxisome fission7.00E-03
125GO:0006644: phospholipid metabolic process7.00E-03
126GO:0006508: proteolysis7.23E-03
127GO:0016126: sterol biosynthetic process7.46E-03
128GO:0071482: cellular response to light stimulus8.03E-03
129GO:0022900: electron transport chain8.03E-03
130GO:0042128: nitrate assimilation8.34E-03
131GO:0098656: anion transmembrane transport9.12E-03
132GO:0009821: alkaloid biosynthetic process9.12E-03
133GO:0046916: cellular transition metal ion homeostasis9.12E-03
134GO:0019432: triglyceride biosynthetic process9.12E-03
135GO:0006783: heme biosynthetic process9.12E-03
136GO:0009056: catabolic process9.12E-03
137GO:0015780: nucleotide-sugar transport9.12E-03
138GO:0009638: phototropism1.03E-02
139GO:0006779: porphyrin-containing compound biosynthetic process1.03E-02
140GO:0010380: regulation of chlorophyll biosynthetic process1.03E-02
141GO:1900426: positive regulation of defense response to bacterium1.03E-02
142GO:0055062: phosphate ion homeostasis1.14E-02
143GO:0051555: flavonol biosynthetic process1.14E-02
144GO:0009688: abscisic acid biosynthetic process1.14E-02
145GO:0045036: protein targeting to chloroplast1.14E-02
146GO:0009641: shade avoidance1.14E-02
147GO:0009637: response to blue light1.24E-02
148GO:0006816: calcium ion transport1.27E-02
149GO:0043085: positive regulation of catalytic activity1.27E-02
150GO:0009682: induced systemic resistance1.27E-02
151GO:0008285: negative regulation of cell proliferation1.27E-02
152GO:0006879: cellular iron ion homeostasis1.27E-02
153GO:0006352: DNA-templated transcription, initiation1.27E-02
154GO:0006790: sulfur compound metabolic process1.40E-02
155GO:0005986: sucrose biosynthetic process1.53E-02
156GO:0030048: actin filament-based movement1.53E-02
157GO:0009785: blue light signaling pathway1.53E-02
158GO:0050826: response to freezing1.53E-02
159GO:0009718: anthocyanin-containing compound biosynthetic process1.53E-02
160GO:0010075: regulation of meristem growth1.53E-02
161GO:0010207: photosystem II assembly1.66E-02
162GO:0048440: carpel development1.66E-02
163GO:0007031: peroxisome organization1.81E-02
164GO:0000162: tryptophan biosynthetic process1.95E-02
165GO:0006071: glycerol metabolic process1.95E-02
166GO:2000377: regulation of reactive oxygen species metabolic process2.10E-02
167GO:0006487: protein N-linked glycosylation2.10E-02
168GO:0051603: proteolysis involved in cellular protein catabolic process2.24E-02
169GO:0008299: isoprenoid biosynthetic process2.25E-02
170GO:0007017: microtubule-based process2.25E-02
171GO:0010073: meristem maintenance2.25E-02
172GO:2000022: regulation of jasmonic acid mediated signaling pathway2.57E-02
173GO:0009693: ethylene biosynthetic process2.73E-02
174GO:0010227: floral organ abscission2.73E-02
175GO:0006012: galactose metabolic process2.73E-02
176GO:0006817: phosphate ion transport2.90E-02
177GO:0046777: protein autophosphorylation3.05E-02
178GO:0015991: ATP hydrolysis coupled proton transport3.25E-02
179GO:0042752: regulation of circadian rhythm3.61E-02
180GO:0009646: response to absence of light3.61E-02
181GO:0008654: phospholipid biosynthetic process3.79E-02
182GO:0009851: auxin biosynthetic process3.79E-02
183GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.98E-02
184GO:0002229: defense response to oomycetes3.98E-02
185GO:0009058: biosynthetic process4.06E-02
186GO:0032259: methylation4.30E-02
187GO:0030163: protein catabolic process4.36E-02
188GO:1901657: glycosyl compound metabolic process4.36E-02
189GO:0006464: cellular protein modification process4.56E-02
190GO:0016579: protein deubiquitination4.96E-02
RankGO TermAdjusted P value
1GO:0045436: lycopene beta cyclase activity0.00E+00
2GO:0030946: protein tyrosine phosphatase activity, metal-dependent0.00E+00
3GO:0047504: (-)-menthol dehydrogenase activity0.00E+00
4GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity0.00E+00
5GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
6GO:0018738: S-formylglutathione hydrolase activity0.00E+00
7GO:0052671: geranylgeraniol kinase activity0.00E+00
8GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity0.00E+00
9GO:0051723: protein methylesterase activity0.00E+00
10GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
11GO:0046905: phytoene synthase activity0.00E+00
12GO:0047501: (+)-neomenthol dehydrogenase activity0.00E+00
13GO:0004417: hydroxyethylthiazole kinase activity0.00E+00
14GO:0052670: geraniol kinase activity0.00E+00
15GO:0052668: farnesol kinase activity0.00E+00
16GO:0004592: pantoate-beta-alanine ligase activity0.00E+00
17GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
18GO:0050342: tocopherol O-methyltransferase activity0.00E+00
19GO:0004046: aminoacylase activity6.85E-06
20GO:0004180: carboxypeptidase activity2.39E-05
21GO:0004848: ureidoglycolate hydrolase activity2.39E-05
22GO:0000254: C-4 methylsterol oxidase activity5.22E-05
23GO:0016491: oxidoreductase activity6.96E-05
24GO:0080079: cellobiose glucosidase activity3.92E-04
25GO:0033984: indole-3-glycerol-phosphate lyase activity3.92E-04
26GO:0015085: calcium ion transmembrane transporter activity3.92E-04
27GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity3.92E-04
28GO:0004793: threonine aldolase activity3.92E-04
29GO:0016783: sulfurtransferase activity3.92E-04
30GO:0004325: ferrochelatase activity3.92E-04
31GO:0051996: squalene synthase activity3.92E-04
32GO:0008732: L-allo-threonine aldolase activity3.92E-04
33GO:0016920: pyroglutamyl-peptidase activity3.92E-04
34GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.92E-04
35GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity3.92E-04
36GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.92E-04
37GO:0004485: methylcrotonoyl-CoA carboxylase activity3.92E-04
38GO:0046480: galactolipid galactosyltransferase activity3.92E-04
39GO:0046906: tetrapyrrole binding3.92E-04
40GO:0048038: quinone binding6.43E-04
41GO:0071949: FAD binding6.57E-04
42GO:0050347: trans-octaprenyltranstransferase activity8.49E-04
43GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity8.49E-04
44GO:0004061: arylformamidase activity8.49E-04
45GO:0004450: isocitrate dehydrogenase (NADP+) activity8.49E-04
46GO:0004310: farnesyl-diphosphate farnesyltransferase activity8.49E-04
47GO:0035241: protein-arginine omega-N monomethyltransferase activity8.49E-04
48GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity8.49E-04
49GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity8.49E-04
50GO:0010331: gibberellin binding8.49E-04
51GO:0043425: bHLH transcription factor binding8.49E-04
52GO:0004129: cytochrome-c oxidase activity1.04E-03
53GO:0005315: inorganic phosphate transmembrane transporter activity1.34E-03
54GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.38E-03
55GO:0010277: chlorophyllide a oxygenase [overall] activity1.38E-03
56GO:0046524: sucrose-phosphate synthase activity1.38E-03
57GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.38E-03
58GO:0032947: protein complex scaffold1.38E-03
59GO:0004075: biotin carboxylase activity1.38E-03
60GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity1.38E-03
61GO:0008469: histone-arginine N-methyltransferase activity1.38E-03
62GO:0035529: NADH pyrophosphatase activity1.99E-03
63GO:0004792: thiosulfate sulfurtransferase activity1.99E-03
64GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity1.99E-03
65GO:0016851: magnesium chelatase activity1.99E-03
66GO:0008106: alcohol dehydrogenase (NADP+) activity1.99E-03
67GO:0000339: RNA cap binding1.99E-03
68GO:0009882: blue light photoreceptor activity1.99E-03
69GO:0047627: adenylylsulfatase activity1.99E-03
70GO:0004176: ATP-dependent peptidase activity2.54E-03
71GO:0015369: calcium:proton antiporter activity2.67E-03
72GO:0016987: sigma factor activity2.67E-03
73GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor2.67E-03
74GO:0015368: calcium:cation antiporter activity2.67E-03
75GO:0001053: plastid sigma factor activity2.67E-03
76GO:0004834: tryptophan synthase activity2.67E-03
77GO:0016787: hydrolase activity2.90E-03
78GO:0004623: phospholipase A2 activity3.42E-03
79GO:0004356: glutamate-ammonia ligase activity3.42E-03
80GO:0008080: N-acetyltransferase activity4.17E-03
81GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity4.23E-03
82GO:0000293: ferric-chelate reductase activity4.23E-03
83GO:0015271: outward rectifier potassium channel activity4.23E-03
84GO:0004605: phosphatidate cytidylyltransferase activity4.23E-03
85GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups5.03E-03
86GO:0070300: phosphatidic acid binding5.09E-03
87GO:0004144: diacylglycerol O-acyltransferase activity5.09E-03
88GO:0004559: alpha-mannosidase activity5.09E-03
89GO:0016157: sucrose synthase activity5.09E-03
90GO:0005338: nucleotide-sugar transmembrane transporter activity6.02E-03
91GO:0016621: cinnamoyl-CoA reductase activity6.02E-03
92GO:0019899: enzyme binding6.02E-03
93GO:0015140: malate transmembrane transporter activity6.02E-03
94GO:0008143: poly(A) binding6.02E-03
95GO:0008483: transaminase activity6.64E-03
96GO:0008237: metallopeptidase activity6.64E-03
97GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity7.00E-03
98GO:0004034: aldose 1-epimerase activity7.00E-03
99GO:0005267: potassium channel activity8.03E-03
100GO:0015078: hydrogen ion transmembrane transporter activity8.03E-03
101GO:0046914: transition metal ion binding8.03E-03
102GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors9.12E-03
103GO:0008236: serine-type peptidase activity9.27E-03
104GO:0042803: protein homodimerization activity1.02E-02
105GO:0016844: strictosidine synthase activity1.03E-02
106GO:0004222: metalloendopeptidase activity1.08E-02
107GO:0046961: proton-transporting ATPase activity, rotational mechanism1.27E-02
108GO:0008378: galactosyltransferase activity1.40E-02
109GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.53E-02
110GO:0031072: heat shock protein binding1.53E-02
111GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.66E-02
112GO:0042802: identical protein binding1.67E-02
113GO:0051537: 2 iron, 2 sulfur cluster binding1.73E-02
114GO:0051287: NAD binding1.94E-02
115GO:0003887: DNA-directed DNA polymerase activity1.95E-02
116GO:0008168: methyltransferase activity2.04E-02
117GO:0051536: iron-sulfur cluster binding2.10E-02
118GO:0016788: hydrolase activity, acting on ester bonds2.19E-02
119GO:0015079: potassium ion transmembrane transporter activity2.25E-02
120GO:0022857: transmembrane transporter activity2.90E-02
121GO:0008514: organic anion transmembrane transporter activity2.90E-02
122GO:0005506: iron ion binding3.09E-02
123GO:0050662: coenzyme binding3.61E-02
124GO:0016853: isomerase activity3.61E-02
125GO:0004843: thiol-dependent ubiquitin-specific protease activity3.98E-02
126GO:0004197: cysteine-type endopeptidase activity4.17E-02
127GO:0016413: O-acetyltransferase activity4.96E-02
RankGO TermAdjusted P value
1GO:0097708: intracellular vesicle0.00E+00
2GO:0009507: chloroplast6.63E-20
3GO:0009535: chloroplast thylakoid membrane8.33E-06
4GO:0031969: chloroplast membrane7.77E-05
5GO:0000152: nuclear ubiquitin ligase complex3.92E-04
6GO:0005845: mRNA cap binding complex3.92E-04
7GO:0031972: chloroplast intermembrane space3.92E-04
8GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.57E-04
9GO:0016604: nuclear body7.75E-04
10GO:0005846: nuclear cap binding complex8.49E-04
11GO:0005773: vacuole9.99E-04
12GO:0016605: PML body1.38E-03
13GO:0009517: PSII associated light-harvesting complex II2.67E-03
14GO:0033179: proton-transporting V-type ATPase, V0 domain2.67E-03
15GO:0030286: dynein complex2.67E-03
16GO:0031372: UBC13-MMS2 complex2.67E-03
17GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain3.42E-03
18GO:0055035: plastid thylakoid membrane3.42E-03
19GO:0009536: plastid5.97E-03
20GO:0031359: integral component of chloroplast outer membrane6.02E-03
21GO:0009706: chloroplast inner membrane6.12E-03
22GO:0016021: integral component of membrane6.85E-03
23GO:0005779: integral component of peroxisomal membrane8.03E-03
24GO:0005811: lipid particle8.03E-03
25GO:0009705: plant-type vacuole membrane1.23E-02
26GO:0005764: lysosome1.66E-02
27GO:0005875: microtubule associated complex1.95E-02
28GO:0042651: thylakoid membrane2.25E-02
29GO:0005783: endoplasmic reticulum2.55E-02
30GO:0005747: mitochondrial respiratory chain complex I2.64E-02
31GO:0010287: plastoglobule3.65E-02
32GO:0005777: peroxisome3.73E-02
33GO:0009523: photosystem II3.79E-02
34GO:0009941: chloroplast envelope4.45E-02
35GO:0005778: peroxisomal membrane4.76E-02
36GO:0005759: mitochondrial matrix4.82E-02
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Gene type



Gene DE type