GO Enrichment Analysis of Co-expressed Genes with
AT3G56490
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process | 0.00E+00 |
| 2 | GO:1903857: negative regulation of cytokinin dehydrogenase activity | 0.00E+00 |
| 3 | GO:0034050: host programmed cell death induced by symbiont | 0.00E+00 |
| 4 | GO:0046487: glyoxylate metabolic process | 0.00E+00 |
| 5 | GO:1990569: UDP-N-acetylglucosamine transmembrane transport | 0.00E+00 |
| 6 | GO:0015789: UDP-N-acetylgalactosamine transport | 0.00E+00 |
| 7 | GO:0006412: translation | 4.83E-128 |
| 8 | GO:0042254: ribosome biogenesis | 3.40E-48 |
| 9 | GO:0000027: ribosomal large subunit assembly | 1.22E-13 |
| 10 | GO:0000028: ribosomal small subunit assembly | 7.65E-08 |
| 11 | GO:0009735: response to cytokinin | 6.93E-07 |
| 12 | GO:1902626: assembly of large subunit precursor of preribosome | 1.39E-05 |
| 13 | GO:0006626: protein targeting to mitochondrion | 5.13E-05 |
| 14 | GO:0009955: adaxial/abaxial pattern specification | 1.76E-04 |
| 15 | GO:0030490: maturation of SSU-rRNA | 2.92E-04 |
| 16 | GO:0006434: seryl-tRNA aminoacylation | 2.92E-04 |
| 17 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.92E-04 |
| 18 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.92E-04 |
| 19 | GO:0032365: intracellular lipid transport | 2.92E-04 |
| 20 | GO:0006407: rRNA export from nucleus | 2.92E-04 |
| 21 | GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process | 2.92E-04 |
| 22 | GO:0000387: spliceosomal snRNP assembly | 5.10E-04 |
| 23 | GO:0045901: positive regulation of translational elongation | 6.40E-04 |
| 24 | GO:0048569: post-embryonic animal organ development | 6.40E-04 |
| 25 | GO:0006452: translational frameshifting | 6.40E-04 |
| 26 | GO:0009967: positive regulation of signal transduction | 6.40E-04 |
| 27 | GO:0051788: response to misfolded protein | 6.40E-04 |
| 28 | GO:0045859: regulation of protein kinase activity | 6.40E-04 |
| 29 | GO:0045905: positive regulation of translational termination | 6.40E-04 |
| 30 | GO:0000398: mRNA splicing, via spliceosome | 7.46E-04 |
| 31 | GO:0006820: anion transport | 7.84E-04 |
| 32 | GO:0010476: gibberellin mediated signaling pathway | 1.04E-03 |
| 33 | GO:0042256: mature ribosome assembly | 1.04E-03 |
| 34 | GO:0002181: cytoplasmic translation | 1.04E-03 |
| 35 | GO:0006487: protein N-linked glycosylation | 1.37E-03 |
| 36 | GO:0070301: cellular response to hydrogen peroxide | 1.48E-03 |
| 37 | GO:0006241: CTP biosynthetic process | 1.48E-03 |
| 38 | GO:0006165: nucleoside diphosphate phosphorylation | 1.48E-03 |
| 39 | GO:0006228: UTP biosynthetic process | 1.48E-03 |
| 40 | GO:0009647: skotomorphogenesis | 1.48E-03 |
| 41 | GO:0008283: cell proliferation | 1.53E-03 |
| 42 | GO:0010483: pollen tube reception | 1.99E-03 |
| 43 | GO:0042274: ribosomal small subunit biogenesis | 1.99E-03 |
| 44 | GO:0006183: GTP biosynthetic process | 1.99E-03 |
| 45 | GO:1902183: regulation of shoot apical meristem development | 2.54E-03 |
| 46 | GO:0019408: dolichol biosynthetic process | 2.54E-03 |
| 47 | GO:0018279: protein N-linked glycosylation via asparagine | 2.54E-03 |
| 48 | GO:0000470: maturation of LSU-rRNA | 3.14E-03 |
| 49 | GO:0043248: proteasome assembly | 3.14E-03 |
| 50 | GO:0016444: somatic cell DNA recombination | 3.77E-03 |
| 51 | GO:1901001: negative regulation of response to salt stress | 3.77E-03 |
| 52 | GO:0006458: 'de novo' protein folding | 3.77E-03 |
| 53 | GO:0046686: response to cadmium ion | 3.85E-03 |
| 54 | GO:0048528: post-embryonic root development | 4.45E-03 |
| 55 | GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c | 4.45E-03 |
| 56 | GO:0009645: response to low light intensity stimulus | 4.45E-03 |
| 57 | GO:0031540: regulation of anthocyanin biosynthetic process | 5.17E-03 |
| 58 | GO:0043562: cellular response to nitrogen levels | 5.92E-03 |
| 59 | GO:0030968: endoplasmic reticulum unfolded protein response | 5.92E-03 |
| 60 | GO:0006413: translational initiation | 6.44E-03 |
| 61 | GO:0015780: nucleotide-sugar transport | 6.71E-03 |
| 62 | GO:0098656: anion transmembrane transport | 6.71E-03 |
| 63 | GO:0009245: lipid A biosynthetic process | 6.71E-03 |
| 64 | GO:0010215: cellulose microfibril organization | 8.40E-03 |
| 65 | GO:0009793: embryo development ending in seed dormancy | 9.03E-03 |
| 66 | GO:0010015: root morphogenesis | 9.30E-03 |
| 67 | GO:0006913: nucleocytoplasmic transport | 9.30E-03 |
| 68 | GO:0012501: programmed cell death | 1.02E-02 |
| 69 | GO:0009644: response to high light intensity | 1.12E-02 |
| 70 | GO:0010102: lateral root morphogenesis | 1.12E-02 |
| 71 | GO:0009965: leaf morphogenesis | 1.16E-02 |
| 72 | GO:0048467: gynoecium development | 1.22E-02 |
| 73 | GO:0006446: regulation of translational initiation | 1.22E-02 |
| 74 | GO:0030150: protein import into mitochondrial matrix | 1.54E-02 |
| 75 | GO:0006289: nucleotide-excision repair | 1.54E-02 |
| 76 | GO:0006334: nucleosome assembly | 1.76E-02 |
| 77 | GO:0061077: chaperone-mediated protein folding | 1.76E-02 |
| 78 | GO:0007005: mitochondrion organization | 1.88E-02 |
| 79 | GO:0009651: response to salt stress | 1.98E-02 |
| 80 | GO:0071215: cellular response to abscisic acid stimulus | 2.00E-02 |
| 81 | GO:0040007: growth | 2.00E-02 |
| 82 | GO:0010584: pollen exine formation | 2.12E-02 |
| 83 | GO:0009845: seed germination | 2.69E-02 |
| 84 | GO:0010183: pollen tube guidance | 2.77E-02 |
| 85 | GO:0048825: cotyledon development | 2.77E-02 |
| 86 | GO:0009749: response to glucose | 2.77E-02 |
| 87 | GO:0006414: translational elongation | 2.88E-02 |
| 88 | GO:0006635: fatty acid beta-oxidation | 2.91E-02 |
| 89 | GO:0006633: fatty acid biosynthetic process | 3.13E-02 |
| 90 | GO:0030163: protein catabolic process | 3.19E-02 |
| 91 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 3.84E-02 |
| 92 | GO:0042128: nitrate assimilation | 4.09E-02 |
| 93 | GO:0009617: response to bacterium | 4.09E-02 |
| 94 | GO:0016049: cell growth | 4.41E-02 |
| 95 | GO:0006811: ion transport | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity | 0.00E+00 |
| 2 | GO:0003735: structural constituent of ribosome | 3.57E-148 |
| 3 | GO:0003729: mRNA binding | 6.87E-30 |
| 4 | GO:0019843: rRNA binding | 1.01E-13 |
| 5 | GO:0015288: porin activity | 7.38E-06 |
| 6 | GO:0003746: translation elongation factor activity | 9.59E-06 |
| 7 | GO:0008097: 5S rRNA binding | 3.12E-05 |
| 8 | GO:0043022: ribosome binding | 2.91E-04 |
| 9 | GO:0035614: snRNA stem-loop binding | 2.92E-04 |
| 10 | GO:0000824: inositol tetrakisphosphate 3-kinase activity | 2.92E-04 |
| 11 | GO:0004828: serine-tRNA ligase activity | 2.92E-04 |
| 12 | GO:0004679: AMP-activated protein kinase activity | 2.92E-04 |
| 13 | GO:0047326: inositol tetrakisphosphate 5-kinase activity | 2.92E-04 |
| 14 | GO:0015157: oligosaccharide transmembrane transporter activity | 2.92E-04 |
| 15 | GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity | 2.92E-04 |
| 16 | GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity | 2.92E-04 |
| 17 | GO:0008308: voltage-gated anion channel activity | 3.57E-04 |
| 18 | GO:0001055: RNA polymerase II activity | 5.10E-04 |
| 19 | GO:0032934: sterol binding | 6.40E-04 |
| 20 | GO:0005078: MAP-kinase scaffold activity | 6.40E-04 |
| 21 | GO:0030619: U1 snRNA binding | 6.40E-04 |
| 22 | GO:0001054: RNA polymerase I activity | 6.86E-04 |
| 23 | GO:0044183: protein binding involved in protein folding | 6.86E-04 |
| 24 | GO:0001056: RNA polymerase III activity | 7.84E-04 |
| 25 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 8.32E-04 |
| 26 | GO:0032947: protein complex scaffold | 1.04E-03 |
| 27 | GO:0004550: nucleoside diphosphate kinase activity | 1.48E-03 |
| 28 | GO:0070628: proteasome binding | 1.99E-03 |
| 29 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 2.24E-03 |
| 30 | GO:0045547: dehydrodolichyl diphosphate synthase activity | 2.54E-03 |
| 31 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 2.54E-03 |
| 32 | GO:0031593: polyubiquitin binding | 3.14E-03 |
| 33 | GO:0031177: phosphopantetheine binding | 3.14E-03 |
| 34 | GO:0051920: peroxiredoxin activity | 3.77E-03 |
| 35 | GO:0000035: acyl binding | 3.77E-03 |
| 36 | GO:0019887: protein kinase regulator activity | 3.77E-03 |
| 37 | GO:0005338: nucleotide-sugar transmembrane transporter activity | 4.45E-03 |
| 38 | GO:0008121: ubiquinol-cytochrome-c reductase activity | 4.45E-03 |
| 39 | GO:0003723: RNA binding | 4.67E-03 |
| 40 | GO:0016209: antioxidant activity | 5.17E-03 |
| 41 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 5.17E-03 |
| 42 | GO:0015266: protein channel activity | 1.12E-02 |
| 43 | GO:0051536: iron-sulfur cluster binding | 1.54E-02 |
| 44 | GO:0043130: ubiquitin binding | 1.54E-02 |
| 45 | GO:0005216: ion channel activity | 1.65E-02 |
| 46 | GO:0051082: unfolded protein binding | 1.99E-02 |
| 47 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 2.50E-02 |
| 48 | GO:0003684: damaged DNA binding | 3.34E-02 |
| 49 | GO:0003743: translation initiation factor activity | 4.01E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043186: P granule | 0.00E+00 |
| 2 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 3 | GO:0005840: ribosome | 3.32E-107 |
| 4 | GO:0022625: cytosolic large ribosomal subunit | 4.89E-96 |
| 5 | GO:0022626: cytosolic ribosome | 1.54E-89 |
| 6 | GO:0022627: cytosolic small ribosomal subunit | 5.95E-64 |
| 7 | GO:0005829: cytosol | 1.64E-35 |
| 8 | GO:0005737: cytoplasm | 1.03E-34 |
| 9 | GO:0005730: nucleolus | 7.07E-24 |
| 10 | GO:0009506: plasmodesma | 2.07E-22 |
| 11 | GO:0015934: large ribosomal subunit | 3.94E-17 |
| 12 | GO:0005774: vacuolar membrane | 1.24E-11 |
| 13 | GO:0015935: small ribosomal subunit | 2.86E-11 |
| 14 | GO:0016020: membrane | 1.95E-09 |
| 15 | GO:0005773: vacuole | 2.32E-08 |
| 16 | GO:0005618: cell wall | 1.03E-07 |
| 17 | GO:0005886: plasma membrane | 7.20E-06 |
| 18 | GO:0046930: pore complex | 1.06E-05 |
| 19 | GO:0005853: eukaryotic translation elongation factor 1 complex | 1.39E-05 |
| 20 | GO:0005665: DNA-directed RNA polymerase II, core complex | 4.17E-05 |
| 21 | GO:0019013: viral nucleocapsid | 5.13E-05 |
| 22 | GO:0009507: chloroplast | 6.44E-05 |
| 23 | GO:0030686: 90S preribosome | 2.92E-04 |
| 24 | GO:0005736: DNA-directed RNA polymerase I complex | 4.30E-04 |
| 25 | GO:0005685: U1 snRNP | 4.30E-04 |
| 26 | GO:0005681: spliceosomal complex | 4.50E-04 |
| 27 | GO:0005666: DNA-directed RNA polymerase III complex | 5.10E-04 |
| 28 | GO:0000418: DNA-directed RNA polymerase IV complex | 5.95E-04 |
| 29 | GO:0005732: small nucleolar ribonucleoprotein complex | 6.85E-04 |
| 30 | GO:0034719: SMN-Sm protein complex | 1.04E-03 |
| 31 | GO:0000419: DNA-directed RNA polymerase V complex | 1.24E-03 |
| 32 | GO:0005758: mitochondrial intermembrane space | 1.37E-03 |
| 33 | GO:0005741: mitochondrial outer membrane | 1.66E-03 |
| 34 | GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) | 1.99E-03 |
| 35 | GO:0005682: U5 snRNP | 1.99E-03 |
| 36 | GO:0005687: U4 snRNP | 2.54E-03 |
| 37 | GO:0097526: spliceosomal tri-snRNP complex | 2.54E-03 |
| 38 | GO:0008250: oligosaccharyltransferase complex | 2.54E-03 |
| 39 | GO:0005689: U12-type spliceosomal complex | 3.77E-03 |
| 40 | GO:0016272: prefoldin complex | 3.77E-03 |
| 41 | GO:0031359: integral component of chloroplast outer membrane | 4.45E-03 |
| 42 | GO:0071004: U2-type prespliceosome | 5.17E-03 |
| 43 | GO:0005742: mitochondrial outer membrane translocase complex | 5.92E-03 |
| 44 | GO:0071011: precatalytic spliceosome | 7.54E-03 |
| 45 | GO:0015030: Cajal body | 7.54E-03 |
| 46 | GO:0005740: mitochondrial envelope | 8.40E-03 |
| 47 | GO:0005686: U2 snRNP | 8.40E-03 |
| 48 | GO:0005852: eukaryotic translation initiation factor 3 complex | 9.30E-03 |
| 49 | GO:0008541: proteasome regulatory particle, lid subcomplex | 9.30E-03 |
| 50 | GO:0071013: catalytic step 2 spliceosome | 9.30E-03 |
| 51 | GO:0048471: perinuclear region of cytoplasm | 9.30E-03 |
| 52 | GO:0005750: mitochondrial respiratory chain complex III | 1.22E-02 |
| 53 | GO:0005753: mitochondrial proton-transporting ATP synthase complex | 1.32E-02 |
| 54 | GO:0000502: proteasome complex | 1.39E-02 |
| 55 | GO:0070469: respiratory chain | 1.65E-02 |
| 56 | GO:0005743: mitochondrial inner membrane | 2.41E-02 |
| 57 | GO:0005622: intracellular | 3.72E-02 |
| 58 | GO:0030529: intracellular ribonucleoprotein complex | 3.78E-02 |