co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56340

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006412: translation	3.79E-112
2	GO:0042254: ribosome biogenesis	8.74E-32
3	GO:0000027: ribosomal large subunit assembly	1.44E-09
4	GO:0000028: ribosomal small subunit assembly	2.92E-09
5	GO:0006626: protein targeting to mitochondrion	4.98E-06
6	GO:0009955: adaxial/abaxial pattern specification	3.53E-05
7	GO:0006407: rRNA export from nucleus	1.06E-04
8	GO:0030490: maturation of SSU-rRNA	1.06E-04
9	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.06E-04
10	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.06E-04
11	GO:0048569: post-embryonic animal organ development	2.48E-04
12	GO:1902626: assembly of large subunit precursor of preribosome	4.12E-04
13	GO:0002181: cytoplasmic translation	4.12E-04
14	GO:0042256: mature ribosome assembly	4.12E-04
15	GO:0070301: cellular response to hydrogen peroxide	5.92E-04
16	GO:0006241: CTP biosynthetic process	5.92E-04
17	GO:0006165: nucleoside diphosphate phosphorylation	5.92E-04
18	GO:0006228: UTP biosynthetic process	5.92E-04
19	GO:0006183: GTP biosynthetic process	7.86E-04
20	GO:0045040: protein import into mitochondrial outer membrane	1.21E-03
21	GO:0000470: maturation of LSU-rRNA	1.21E-03
22	GO:0009735: response to cytokinin	1.58E-03
23	GO:0006526: arginine biosynthetic process	2.24E-03
24	GO:0010102: lateral root morphogenesis	4.16E-03
25	GO:0030150: protein import into mitochondrial matrix	5.65E-03
26	GO:0007005: mitochondrion organization	6.87E-03
27	GO:0009793: embryo development ending in seed dormancy	1.88E-02
28	GO:0008283: cell proliferation	2.34E-02
29	GO:0009644: response to high light intensity	2.47E-02
30	GO:0009965: leaf morphogenesis	2.54E-02
31	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.68E-02
32	GO:0015031: protein transport	2.94E-02
33	GO:0009620: response to fungus	3.49E-02

Rank	GO Term	Adjusted P value
1	GO:0004055: argininosuccinate synthase activity	0.00E+00
2	GO:0003735: structural constituent of ribosome	2.43E-125
3	GO:0003729: mRNA binding	5.46E-26
4	GO:0019843: rRNA binding	6.05E-14
5	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.27E-04
6	GO:0004550: nucleoside diphosphate kinase activity	5.92E-04
7	GO:0008097: 5S rRNA binding	5.92E-04
8	GO:0044183: protein binding involved in protein folding	3.47E-03
9	GO:0015266: protein channel activity	4.16E-03
10	GO:0003723: RNA binding	1.57E-02
11	GO:0051082: unfolded protein binding	3.72E-02

Rank	GO Term	Adjusted P value
1	GO:0022625: cytosolic large ribosomal subunit	1.85E-81
2	GO:0005840: ribosome	3.12E-77
3	GO:0022626: cytosolic ribosome	6.14E-77
4	GO:0022627: cytosolic small ribosomal subunit	1.21E-49
5	GO:0005737: cytoplasm	5.42E-30
6	GO:0009506: plasmodesma	1.19E-17
7	GO:0005829: cytosol	8.24E-15
8	GO:0015934: large ribosomal subunit	8.41E-15
9	GO:0005774: vacuolar membrane	3.58E-14
10	GO:0005730: nucleolus	3.65E-14
11	GO:0015935: small ribosomal subunit	2.57E-09
12	GO:0005773: vacuole	1.48E-07
13	GO:0005618: cell wall	2.59E-07
14	GO:0016020: membrane	3.48E-07
15	GO:0030686: 90S preribosome	1.06E-04
16	GO:0005758: mitochondrial intermembrane space	3.49E-04
17	GO:0005886: plasma membrane	3.58E-04
18	GO:0016272: prefoldin complex	1.45E-03
19	GO:0009507: chloroplast	1.95E-03
20	GO:0005742: mitochondrial outer membrane translocase complex	2.24E-03
21	GO:0031307: integral component of mitochondrial outer membrane	3.81E-03
22	GO:0005743: mitochondrial inner membrane	2.17E-02