Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G56310

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042908: xenobiotic transport0.00E+00
2GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase0.00E+00
3GO:0006593: ornithine catabolic process0.00E+00
4GO:0043171: peptide catabolic process0.00E+00
5GO:0023052: signaling0.00E+00
6GO:0006511: ubiquitin-dependent protein catabolic process5.39E-08
7GO:0051603: proteolysis involved in cellular protein catabolic process1.51E-07
8GO:0010255: glucose mediated signaling pathway9.86E-06
9GO:0046686: response to cadmium ion1.90E-05
10GO:0055114: oxidation-reduction process2.31E-05
11GO:0015991: ATP hydrolysis coupled proton transport6.62E-05
12GO:0006560: proline metabolic process1.52E-04
13GO:0031468: nuclear envelope reassembly1.52E-04
14GO:1902418: (+)-abscisic acid D-glucopyranosyl ester transmembrane transport1.52E-04
15GO:0010265: SCF complex assembly1.52E-04
16GO:0019544: arginine catabolic process to glutamate1.52E-04
17GO:0015798: myo-inositol transport1.52E-04
18GO:0000305: response to oxygen radical1.52E-04
19GO:0009240: isopentenyl diphosphate biosynthetic process1.52E-04
20GO:0009852: auxin catabolic process1.52E-04
21GO:0080144: amino acid homeostasis1.66E-04
22GO:0010043: response to zinc ion3.07E-04
23GO:0019483: beta-alanine biosynthetic process3.47E-04
24GO:0080026: response to indolebutyric acid3.47E-04
25GO:0050992: dimethylallyl diphosphate biosynthetic process3.47E-04
26GO:0010133: proline catabolic process to glutamate3.47E-04
27GO:0006212: uracil catabolic process3.47E-04
28GO:0043255: regulation of carbohydrate biosynthetic process3.47E-04
29GO:0019388: galactose catabolic process3.47E-04
30GO:0006006: glucose metabolic process3.61E-04
31GO:0006807: nitrogen compound metabolic process3.61E-04
32GO:0007030: Golgi organization4.57E-04
33GO:0046034: ATP metabolic process5.68E-04
34GO:0051646: mitochondrion localization5.68E-04
35GO:0080121: AMP transport5.68E-04
36GO:0030835: negative regulation of actin filament depolymerization5.68E-04
37GO:0045793: positive regulation of cell size5.68E-04
38GO:0006081: cellular aldehyde metabolic process5.68E-04
39GO:0010498: proteasomal protein catabolic process5.68E-04
40GO:0009590: detection of gravity8.13E-04
41GO:0015700: arsenite transport8.13E-04
42GO:0080024: indolebutyric acid metabolic process8.13E-04
43GO:0032877: positive regulation of DNA endoreduplication8.13E-04
44GO:0051259: protein oligomerization8.13E-04
45GO:0044205: 'de novo' UMP biosynthetic process1.08E-03
46GO:0006749: glutathione metabolic process1.08E-03
47GO:0015867: ATP transport1.08E-03
48GO:0032366: intracellular sterol transport1.08E-03
49GO:0051781: positive regulation of cell division1.08E-03
50GO:0010363: regulation of plant-type hypersensitive response1.08E-03
51GO:0006221: pyrimidine nucleotide biosynthetic process1.08E-03
52GO:0015986: ATP synthesis coupled proton transport1.17E-03
53GO:0098719: sodium ion import across plasma membrane1.36E-03
54GO:0006564: L-serine biosynthetic process1.36E-03
55GO:0009229: thiamine diphosphate biosynthetic process1.36E-03
56GO:0009697: salicylic acid biosynthetic process1.36E-03
57GO:0009228: thiamine biosynthetic process1.67E-03
58GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly1.67E-03
59GO:0006561: proline biosynthetic process1.67E-03
60GO:0006751: glutathione catabolic process1.67E-03
61GO:0015866: ADP transport1.67E-03
62GO:0042732: D-xylose metabolic process1.67E-03
63GO:0006120: mitochondrial electron transport, NADH to ubiquinone2.01E-03
64GO:0009816: defense response to bacterium, incompatible interaction2.03E-03
65GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process2.36E-03
66GO:0050790: regulation of catalytic activity2.36E-03
67GO:0010044: response to aluminum ion2.36E-03
68GO:0032880: regulation of protein localization2.36E-03
69GO:0051693: actin filament capping2.36E-03
70GO:0009651: response to salt stress2.61E-03
71GO:0000028: ribosomal small subunit assembly2.73E-03
72GO:0048658: anther wall tapetum development2.73E-03
73GO:0005978: glycogen biosynthetic process2.73E-03
74GO:0043562: cellular response to nitrogen levels3.12E-03
75GO:0015996: chlorophyll catabolic process3.12E-03
76GO:0009853: photorespiration3.15E-03
77GO:0006099: tricarboxylic acid cycle3.29E-03
78GO:0009735: response to cytokinin3.36E-03
79GO:0009060: aerobic respiration3.53E-03
80GO:0046685: response to arsenic-containing substance3.53E-03
81GO:0006098: pentose-phosphate shunt3.53E-03
82GO:0009821: alkaloid biosynthetic process3.53E-03
83GO:0009826: unidimensional cell growth3.56E-03
84GO:0006631: fatty acid metabolic process3.74E-03
85GO:0051453: regulation of intracellular pH3.96E-03
86GO:0048354: mucilage biosynthetic process involved in seed coat development3.96E-03
87GO:0010192: mucilage biosynthetic process4.40E-03
88GO:0006896: Golgi to vacuole transport4.40E-03
89GO:0009636: response to toxic substance4.55E-03
90GO:0018119: peptidyl-cysteine S-nitrosylation4.86E-03
91GO:0048229: gametophyte development4.86E-03
92GO:0009684: indoleacetic acid biosynthetic process4.86E-03
93GO:0072593: reactive oxygen species metabolic process4.86E-03
94GO:0006810: transport5.76E-03
95GO:0010102: lateral root morphogenesis5.83E-03
96GO:0006108: malate metabolic process5.83E-03
97GO:0006094: gluconeogenesis5.83E-03
98GO:0005975: carbohydrate metabolic process6.10E-03
99GO:0045454: cell redox homeostasis6.17E-03
100GO:0007034: vacuolar transport6.33E-03
101GO:0006096: glycolytic process6.45E-03
102GO:0006508: proteolysis6.79E-03
103GO:0009626: plant-type hypersensitive response6.87E-03
104GO:0051017: actin filament bundle assembly7.95E-03
105GO:0006487: protein N-linked glycosylation7.95E-03
106GO:0018105: peptidyl-serine phosphorylation7.99E-03
107GO:0009695: jasmonic acid biosynthetic process8.51E-03
108GO:0019953: sexual reproduction8.51E-03
109GO:0008299: isoprenoid biosynthetic process8.51E-03
110GO:0006366: transcription from RNA polymerase II promoter9.10E-03
111GO:0003333: amino acid transmembrane transport9.10E-03
112GO:0015992: proton transport9.10E-03
113GO:0009269: response to desiccation9.10E-03
114GO:0031408: oxylipin biosynthetic process9.10E-03
115GO:0035428: hexose transmembrane transport9.69E-03
116GO:0030433: ubiquitin-dependent ERAD pathway9.69E-03
117GO:0019748: secondary metabolic process9.69E-03
118GO:0006012: galactose metabolic process1.03E-02
119GO:0042744: hydrogen peroxide catabolic process1.11E-02
120GO:0042335: cuticle development1.22E-02
121GO:0080022: primary root development1.22E-02
122GO:0042391: regulation of membrane potential1.22E-02
123GO:0034220: ion transmembrane transport1.22E-02
124GO:0010051: xylem and phloem pattern formation1.22E-02
125GO:0010154: fruit development1.29E-02
126GO:0046323: glucose import1.29E-02
127GO:0010268: brassinosteroid homeostasis1.29E-02
128GO:0061025: membrane fusion1.36E-02
129GO:0006814: sodium ion transport1.36E-02
130GO:0019252: starch biosynthetic process1.42E-02
131GO:0006623: protein targeting to vacuole1.42E-02
132GO:0016132: brassinosteroid biosynthetic process1.50E-02
133GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.50E-02
134GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.51E-02
135GO:0009630: gravitropism1.57E-02
136GO:0009555: pollen development1.67E-02
137GO:0010252: auxin homeostasis1.71E-02
138GO:0009828: plant-type cell wall loosening1.71E-02
139GO:0016125: sterol metabolic process1.71E-02
140GO:0035556: intracellular signal transduction1.79E-02
141GO:0010286: heat acclimation1.79E-02
142GO:0071805: potassium ion transmembrane transport1.79E-02
143GO:0000910: cytokinesis1.86E-02
144GO:0009615: response to virus1.94E-02
145GO:0048573: photoperiodism, flowering2.18E-02
146GO:0015995: chlorophyll biosynthetic process2.18E-02
147GO:0055085: transmembrane transport2.26E-02
148GO:0006457: protein folding2.31E-02
149GO:0008219: cell death2.34E-02
150GO:0009817: defense response to fungus, incompatible interaction2.34E-02
151GO:0009832: plant-type cell wall biogenesis2.43E-02
152GO:0048767: root hair elongation2.43E-02
153GO:0006811: ion transport2.51E-02
154GO:0009407: toxin catabolic process2.51E-02
155GO:0010119: regulation of stomatal movement2.60E-02
156GO:0046777: protein autophosphorylation2.77E-02
157GO:0045087: innate immune response2.78E-02
158GO:0006839: mitochondrial transport3.05E-02
159GO:0009926: auxin polar transport3.32E-02
160GO:0016042: lipid catabolic process3.71E-02
161GO:0006855: drug transmembrane transport3.71E-02
162GO:0009751: response to salicylic acid3.76E-02
163GO:0042538: hyperosmotic salinity response3.91E-02
164GO:0042742: defense response to bacterium4.03E-02
165GO:0006979: response to oxidative stress4.07E-02
166GO:0009809: lignin biosynthetic process4.11E-02
167GO:0006486: protein glycosylation4.11E-02
168GO:0009909: regulation of flower development4.42E-02
169GO:0009620: response to fungus4.95E-02
RankGO TermAdjusted P value
1GO:0015391: nucleobase:cation symporter activity0.00E+00
2GO:0003842: 1-pyrroline-5-carboxylate dehydrogenase activity0.00E+00
3GO:0050334: thiaminase activity0.00E+00
4GO:0004151: dihydroorotase activity0.00E+00
5GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity0.00E+00
6GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity0.00E+00
7GO:0004587: ornithine-oxo-acid transaminase activity0.00E+00
8GO:0003837: beta-ureidopropionase activity0.00E+00
9GO:0009045: xylose isomerase activity0.00E+00
10GO:0009940: amino-terminal vacuolar sorting propeptide binding0.00E+00
11GO:0032441: pheophorbide a oxygenase activity0.00E+00
12GO:0004298: threonine-type endopeptidase activity1.74E-19
13GO:0008233: peptidase activity1.02E-10
14GO:0015446: ATPase-coupled arsenite transmembrane transporter activity1.52E-04
15GO:0070006: metalloaminopeptidase activity1.52E-04
16GO:0030544: Hsp70 protein binding1.52E-04
17GO:0004321: fatty-acyl-CoA synthase activity1.52E-04
18GO:0071992: phytochelatin transmembrane transporter activity1.52E-04
19GO:0010209: vacuolar sorting signal binding1.52E-04
20GO:1902417: (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity1.52E-04
21GO:0016229: steroid dehydrogenase activity1.52E-04
22GO:0004347: glucose-6-phosphate isomerase activity1.52E-04
23GO:0010013: N-1-naphthylphthalamic acid binding1.52E-04
24GO:0070401: NADP+ binding1.52E-04
25GO:0004452: isopentenyl-diphosphate delta-isomerase activity1.52E-04
26GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity2.00E-04
27GO:0046961: proton-transporting ATPase activity, rotational mechanism2.75E-04
28GO:0004614: phosphoglucomutase activity3.47E-04
29GO:0005366: myo-inositol:proton symporter activity3.47E-04
30GO:0080109: indole-3-acetonitrile nitrile hydratase activity3.47E-04
31GO:0004362: glutathione-disulfide reductase activity3.47E-04
32GO:0004617: phosphoglycerate dehydrogenase activity3.47E-04
33GO:0047517: 1,4-beta-D-xylan synthase activity3.47E-04
34GO:0005507: copper ion binding3.65E-04
35GO:0004557: alpha-galactosidase activity5.68E-04
36GO:0080061: indole-3-acetonitrile nitrilase activity5.68E-04
37GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity5.68E-04
38GO:0052692: raffinose alpha-galactosidase activity5.68E-04
39GO:0010277: chlorophyllide a oxygenase [overall] activity5.68E-04
40GO:0008234: cysteine-type peptidase activity7.96E-04
41GO:0016656: monodehydroascorbate reductase (NADH) activity8.13E-04
42GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity8.13E-04
43GO:0000257: nitrilase activity8.13E-04
44GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups8.97E-04
45GO:0050302: indole-3-acetaldehyde oxidase activity1.08E-03
46GO:0004576: oligosaccharyl transferase activity1.08E-03
47GO:0042277: peptide binding1.08E-03
48GO:0004301: epoxide hydrolase activity1.08E-03
49GO:0010011: auxin binding1.08E-03
50GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds1.08E-03
51GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances1.08E-03
52GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.09E-03
53GO:0008137: NADH dehydrogenase (ubiquinone) activity1.34E-03
54GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity1.36E-03
55GO:0080122: AMP transmembrane transporter activity1.36E-03
56GO:0004197: cysteine-type endopeptidase activity1.43E-03
57GO:0051117: ATPase binding1.67E-03
58GO:0036402: proteasome-activating ATPase activity1.67E-03
59GO:0016615: malate dehydrogenase activity1.67E-03
60GO:0004029: aldehyde dehydrogenase (NAD) activity1.67E-03
61GO:0005516: calmodulin binding1.74E-03
62GO:0016597: amino acid binding1.81E-03
63GO:0051213: dioxygenase activity1.92E-03
64GO:0030060: L-malate dehydrogenase activity2.01E-03
65GO:0005347: ATP transmembrane transporter activity2.01E-03
66GO:0005261: cation channel activity2.01E-03
67GO:0015217: ADP transmembrane transporter activity2.01E-03
68GO:0009931: calcium-dependent protein serine/threonine kinase activity2.14E-03
69GO:0004683: calmodulin-dependent protein kinase activity2.26E-03
70GO:0004033: aldo-keto reductase (NADP) activity2.73E-03
71GO:0004869: cysteine-type endopeptidase inhibitor activity2.73E-03
72GO:0004034: aldose 1-epimerase activity2.73E-03
73GO:0050897: cobalt ion binding2.88E-03
74GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism3.53E-03
75GO:0016207: 4-coumarate-CoA ligase activity3.53E-03
76GO:0050661: NADP binding3.59E-03
77GO:0016788: hydrolase activity, acting on ester bonds3.83E-03
78GO:0016844: strictosidine synthase activity3.96E-03
79GO:0051537: 2 iron, 2 sulfur cluster binding4.38E-03
80GO:0050660: flavin adenine dinucleotide binding4.50E-03
81GO:0004129: cytochrome-c oxidase activity4.86E-03
82GO:0008794: arsenate reductase (glutaredoxin) activity4.86E-03
83GO:0004177: aminopeptidase activity4.86E-03
84GO:0008559: xenobiotic-transporting ATPase activity4.86E-03
85GO:0015386: potassium:proton antiporter activity4.86E-03
86GO:0051287: NAD binding4.90E-03
87GO:0031072: heat shock protein binding5.83E-03
88GO:0008266: poly(U) RNA binding6.33E-03
89GO:0004175: endopeptidase activity6.33E-03
90GO:0030552: cAMP binding6.86E-03
91GO:0030553: cGMP binding6.86E-03
92GO:0017025: TBP-class protein binding6.86E-03
93GO:0022857: transmembrane transporter activity7.31E-03
94GO:0001046: core promoter sequence-specific DNA binding7.95E-03
95GO:0051536: iron-sulfur cluster binding7.95E-03
96GO:0043130: ubiquitin binding7.95E-03
97GO:0008324: cation transmembrane transporter activity8.51E-03
98GO:0005216: ion channel activity8.51E-03
99GO:0004540: ribonuclease activity9.10E-03
100GO:0005249: voltage-gated potassium channel activity1.22E-02
101GO:0030551: cyclic nucleotide binding1.22E-02
102GO:0005355: glucose transmembrane transporter activity1.36E-02
103GO:0004872: receptor activity1.42E-02
104GO:0015385: sodium:proton antiporter activity1.64E-02
105GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.64E-02
106GO:0051015: actin filament binding1.64E-02
107GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.71E-02
108GO:0015250: water channel activity1.94E-02
109GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.60E-02
110GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.78E-02
111GO:0052689: carboxylic ester hydrolase activity2.86E-02
112GO:0004712: protein serine/threonine/tyrosine kinase activity2.95E-02
113GO:0051539: 4 iron, 4 sulfur cluster binding3.05E-02
114GO:0004364: glutathione transferase activity3.23E-02
115GO:0004185: serine-type carboxypeptidase activity3.32E-02
116GO:0016787: hydrolase activity3.48E-02
117GO:0005509: calcium ion binding3.65E-02
118GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.71E-02
119GO:0009055: electron carrier activity4.09E-02
120GO:0016298: lipase activity4.21E-02
121GO:0015171: amino acid transmembrane transporter activity4.42E-02
RankGO TermAdjusted P value
1GO:0000221: vacuolar proton-transporting V-type ATPase, V1 domain0.00E+00
2GO:0005839: proteasome core complex1.74E-19
3GO:0000502: proteasome complex6.01E-16
4GO:0005773: vacuole7.12E-14
5GO:0019773: proteasome core complex, alpha-subunit complex2.59E-13
6GO:0005774: vacuolar membrane3.20E-09
7GO:0005829: cytosol3.99E-08
8GO:0005747: mitochondrial respiratory chain complex I6.30E-06
9GO:0005753: mitochondrial proton-transporting ATP synthase complex1.73E-05
10GO:0000325: plant-type vacuole1.96E-05
11GO:0005783: endoplasmic reticulum1.84E-04
12GO:0005777: peroxisome2.30E-04
13GO:0005759: mitochondrial matrix2.83E-04
14GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain3.47E-04
15GO:0005764: lysosome4.07E-04
16GO:0005782: peroxisomal matrix5.68E-04
17GO:0045271: respiratory chain complex I6.20E-04
18GO:0033180: proton-transporting V-type ATPase, V1 domain8.13E-04
19GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)1.08E-03
20GO:0005737: cytoplasm1.11E-03
21GO:0008250: oligosaccharyltransferase complex1.36E-03
22GO:0005746: mitochondrial respiratory chain1.36E-03
23GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)1.67E-03
24GO:0016020: membrane1.91E-03
25GO:0031597: cytosolic proteasome complex2.01E-03
26GO:0031595: nuclear proteasome complex2.36E-03
27GO:0045273: respiratory chain complex II2.73E-03
28GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)2.73E-03
29GO:0048046: apoplast3.11E-03
30GO:0005794: Golgi apparatus3.23E-03
31GO:0031090: organelle membrane3.53E-03
32GO:0005763: mitochondrial small ribosomal subunit3.53E-03
33GO:0010494: cytoplasmic stress granule3.53E-03
34GO:0022626: cytosolic ribosome3.60E-03
35GO:0030665: clathrin-coated vesicle membrane3.96E-03
36GO:0008540: proteasome regulatory particle, base subcomplex3.96E-03
37GO:0017119: Golgi transport complex4.40E-03
38GO:0031966: mitochondrial membrane5.08E-03
39GO:0005886: plasma membrane9.72E-03
40GO:0005618: cell wall1.11E-02
41GO:0005887: integral component of plasma membrane1.19E-02
42GO:0005770: late endosome1.29E-02
43GO:0009705: plant-type vacuole membrane1.34E-02
44GO:0005615: extracellular space1.51E-02
45GO:0009536: plastid1.53E-02
46GO:0032580: Golgi cisterna membrane1.71E-02
47GO:0010319: stromule1.79E-02
48GO:0000932: P-body1.94E-02
49GO:0005788: endoplasmic reticulum lumen2.02E-02
50GO:0005819: spindle2.95E-02
51GO:0031902: late endosome membrane3.14E-02
52GO:0090406: pollen tube3.32E-02
53GO:0009507: chloroplast3.82E-02
54GO:0009506: plasmodesma4.65E-02
55GO:0010008: endosome membrane4.73E-02
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Gene type



Gene DE type