co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G56260

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome	0.00E+00
2	GO:1905499: trichome papilla formation	0.00E+00
3	GO:0019593: mannitol biosynthetic process	0.00E+00
4	GO:0071289: cellular response to nickel ion	0.00E+00
5	GO:0006862: nucleotide transport	0.00E+00
6	GO:0042353: fucose biosynthetic process	0.00E+00
7	GO:0007141: male meiosis I	0.00E+00
8	GO:0035024: negative regulation of Rho protein signal transduction	0.00E+00
9	GO:0010046: response to mycotoxin	0.00E+00
10	GO:0010200: response to chitin	5.14E-13
11	GO:0009873: ethylene-activated signaling pathway	5.71E-07
12	GO:0042335: cuticle development	2.41E-06
13	GO:0010025: wax biosynthetic process	1.16E-05
14	GO:0009695: jasmonic acid biosynthetic process	1.79E-05
15	GO:0009611: response to wounding	1.93E-05
16	GO:2000280: regulation of root development	5.62E-05
17	GO:0006631: fatty acid metabolic process	6.71E-05
18	GO:0009737: response to abscisic acid	8.03E-05
19	GO:0006665: sphingolipid metabolic process	1.82E-04
20	GO:0035435: phosphate ion transmembrane transport	2.58E-04
21	GO:0006811: ion transport	3.23E-04
22	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	4.45E-04
23	GO:0080051: cutin transport	4.53E-04
24	GO:0033481: galacturonate biosynthetic process	4.53E-04
25	GO:0090421: embryonic meristem initiation	4.53E-04
26	GO:0034472: snRNA 3'-end processing	4.53E-04
27	GO:0009609: response to symbiotic bacterium	4.53E-04
28	GO:0051180: vitamin transport	4.53E-04
29	GO:0030974: thiamine pyrophosphate transport	4.53E-04
30	GO:0009865: pollen tube adhesion	4.53E-04
31	GO:0050691: regulation of defense response to virus by host	4.53E-04
32	GO:0006680: glucosylceramide catabolic process	4.53E-04
33	GO:0006839: mitochondrial transport	4.96E-04
34	GO:0009409: response to cold	5.54E-04
35	GO:2000070: regulation of response to water deprivation	5.55E-04
36	GO:0009414: response to water deprivation	6.78E-04
37	GO:0006633: fatty acid biosynthetic process	7.00E-04
38	GO:0098656: anion transmembrane transport	8.12E-04
39	GO:0042538: hyperosmotic salinity response	8.51E-04
40	GO:0042761: very long-chain fatty acid biosynthetic process	9.56E-04
41	GO:0010507: negative regulation of autophagy	9.79E-04
42	GO:0015709: thiosulfate transport	9.79E-04
43	GO:0071422: succinate transmembrane transport	9.79E-04
44	GO:0031407: oxylipin metabolic process	9.79E-04
45	GO:0042754: negative regulation of circadian rhythm	9.79E-04
46	GO:0010289: homogalacturonan biosynthetic process	9.79E-04
47	GO:2000030: regulation of response to red or far red light	9.79E-04
48	GO:0015908: fatty acid transport	9.79E-04
49	GO:1901679: nucleotide transmembrane transport	9.79E-04
50	GO:0015786: UDP-glucose transport	9.79E-04
51	GO:0006898: receptor-mediated endocytosis	9.79E-04
52	GO:0015893: drug transport	9.79E-04
53	GO:0019760: glucosinolate metabolic process	1.08E-03
54	GO:0000038: very long-chain fatty acid metabolic process	1.28E-03
55	GO:0052544: defense response by callose deposition in cell wall	1.28E-03
56	GO:0090630: activation of GTPase activity	1.59E-03
57	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	1.59E-03
58	GO:0015783: GDP-fucose transport	1.59E-03
59	GO:0010325: raffinose family oligosaccharide biosynthetic process	1.59E-03
60	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	1.59E-03
61	GO:0046168: glycerol-3-phosphate catabolic process	1.59E-03
62	GO:0080168: abscisic acid transport	1.59E-03
63	GO:0042344: indole glucosinolate catabolic process	1.59E-03
64	GO:0016045: detection of bacterium	1.59E-03
65	GO:0009062: fatty acid catabolic process	1.59E-03
66	GO:0010359: regulation of anion channel activity	1.59E-03
67	GO:0080121: AMP transport	1.59E-03
68	GO:0010288: response to lead ion	1.59E-03
69	GO:0010143: cutin biosynthetic process	1.88E-03
70	GO:0006970: response to osmotic stress	2.03E-03
71	GO:0009413: response to flooding	2.31E-03
72	GO:0010371: regulation of gibberellin biosynthetic process	2.31E-03
73	GO:0015729: oxaloacetate transport	2.31E-03
74	GO:0072334: UDP-galactose transmembrane transport	2.31E-03
75	GO:0006072: glycerol-3-phosphate metabolic process	2.31E-03
76	GO:0030100: regulation of endocytosis	2.31E-03
77	GO:0033014: tetrapyrrole biosynthetic process	2.31E-03
78	GO:0006952: defense response	2.41E-03
79	GO:0009863: salicylic acid mediated signaling pathway	2.61E-03
80	GO:0006351: transcription, DNA-templated	2.74E-03
81	GO:0009694: jasmonic acid metabolic process	3.10E-03
82	GO:0010222: stem vascular tissue pattern formation	3.10E-03
83	GO:0046345: abscisic acid catabolic process	3.10E-03
84	GO:0006536: glutamate metabolic process	3.10E-03
85	GO:0022622: root system development	3.10E-03
86	GO:0071585: detoxification of cadmium ion	3.10E-03
87	GO:0042991: transcription factor import into nucleus	3.10E-03
88	GO:0015867: ATP transport	3.10E-03
89	GO:1902347: response to strigolactone	3.10E-03
90	GO:0009269: response to desiccation	3.17E-03
91	GO:0031408: oxylipin biosynthetic process	3.17E-03
92	GO:0048497: maintenance of floral organ identity	3.98E-03
93	GO:0009247: glycolipid biosynthetic process	3.98E-03
94	GO:0048359: mucilage metabolic process involved in seed coat development	3.98E-03
95	GO:0071423: malate transmembrane transport	3.98E-03
96	GO:0006873: cellular ion homeostasis	3.98E-03
97	GO:0045487: gibberellin catabolic process	3.98E-03
98	GO:0010091: trichome branching	4.12E-03
99	GO:0050832: defense response to fungus	4.86E-03
100	GO:0006751: glutathione catabolic process	4.92E-03
101	GO:0015866: ADP transport	4.92E-03
102	GO:0010256: endomembrane system organization	4.92E-03
103	GO:0048232: male gamete generation	4.92E-03
104	GO:0006796: phosphate-containing compound metabolic process	4.92E-03
105	GO:0047484: regulation of response to osmotic stress	4.92E-03
106	GO:1900425: negative regulation of defense response to bacterium	4.92E-03
107	GO:0009751: response to salicylic acid	5.04E-03
108	GO:0048868: pollen tube development	5.20E-03
109	GO:0045489: pectin biosynthetic process	5.20E-03
110	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	5.94E-03
111	GO:0010555: response to mannitol	5.94E-03
112	GO:1901001: negative regulation of response to salt stress	5.94E-03
113	GO:0098655: cation transmembrane transport	5.94E-03
114	GO:0010193: response to ozone	6.43E-03
115	GO:0006468: protein phosphorylation	6.98E-03
116	GO:1902074: response to salt	7.03E-03
117	GO:0032880: regulation of protein localization	7.03E-03
118	GO:0006401: RNA catabolic process	7.03E-03
119	GO:0006955: immune response	7.03E-03
120	GO:0030497: fatty acid elongation	7.03E-03
121	GO:0008272: sulfate transport	7.03E-03
122	GO:0055085: transmembrane transport	7.03E-03
123	GO:0050829: defense response to Gram-negative bacterium	7.03E-03
124	GO:0009620: response to fungus	7.22E-03
125	GO:0009639: response to red or far red light	7.80E-03
126	GO:0009624: response to nematode	8.11E-03
127	GO:0007155: cell adhesion	8.18E-03
128	GO:1900150: regulation of defense response to fungus	8.18E-03
129	GO:0019375: galactolipid biosynthetic process	8.18E-03
130	GO:0009415: response to water	8.18E-03
131	GO:0009699: phenylpropanoid biosynthetic process	9.38E-03
132	GO:0009880: embryonic pattern specification	9.38E-03
133	GO:0009827: plant-type cell wall modification	9.38E-03
134	GO:0080167: response to karrikin	1.01E-02
135	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.06E-02
136	GO:0001708: cell fate specification	1.07E-02
137	GO:0015780: nucleotide-sugar transport	1.07E-02
138	GO:0010345: suberin biosynthetic process	1.07E-02
139	GO:0051865: protein autoubiquitination	1.07E-02
140	GO:0006783: heme biosynthetic process	1.07E-02
141	GO:0006779: porphyrin-containing compound biosynthetic process	1.20E-02
142	GO:0048268: clathrin coat assembly	1.20E-02
143	GO:0006355: regulation of transcription, DNA-templated	1.25E-02
144	GO:0055062: phosphate ion homeostasis	1.34E-02
145	GO:0006782: protoporphyrinogen IX biosynthetic process	1.34E-02
146	GO:0051026: chiasma assembly	1.34E-02
147	GO:0019538: protein metabolic process	1.34E-02
148	GO:0045892: negative regulation of transcription, DNA-templated	1.36E-02
149	GO:0009555: pollen development	1.40E-02
150	GO:0018119: peptidyl-cysteine S-nitrosylation	1.48E-02
151	GO:0010015: root morphogenesis	1.48E-02
152	GO:0009682: induced systemic resistance	1.48E-02
153	GO:0008285: negative regulation of cell proliferation	1.48E-02
154	GO:0071365: cellular response to auxin stimulus	1.63E-02
155	GO:0007623: circadian rhythm	1.63E-02
156	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.63E-02
157	GO:0010150: leaf senescence	1.63E-02
158	GO:0050826: response to freezing	1.79E-02
159	GO:0055046: microgametogenesis	1.79E-02
160	GO:0005986: sucrose biosynthetic process	1.79E-02
161	GO:0010588: cotyledon vascular tissue pattern formation	1.79E-02
162	GO:2000012: regulation of auxin polar transport	1.79E-02
163	GO:0006897: endocytosis	1.85E-02
164	GO:0007166: cell surface receptor signaling pathway	1.93E-02
165	GO:0048467: gynoecium development	1.95E-02
166	GO:0002237: response to molecule of bacterial origin	1.95E-02
167	GO:0051707: response to other organism	2.00E-02
168	GO:0009640: photomorphogenesis	2.00E-02
169	GO:0009753: response to jasmonic acid	2.02E-02
170	GO:0070588: calcium ion transmembrane transport	2.12E-02
171	GO:0009969: xyloglucan biosynthetic process	2.12E-02
172	GO:0009225: nucleotide-sugar metabolic process	2.12E-02
173	GO:0071732: cellular response to nitric oxide	2.12E-02
174	GO:0009833: plant-type primary cell wall biogenesis	2.29E-02
175	GO:2000377: regulation of reactive oxygen species metabolic process	2.46E-02
176	GO:0007017: microtubule-based process	2.64E-02
177	GO:0009809: lignin biosynthetic process	2.70E-02
178	GO:0010224: response to UV-B	2.80E-02
179	GO:0031348: negative regulation of defense response	3.01E-02
180	GO:0030245: cellulose catabolic process	3.01E-02
181	GO:0007131: reciprocal meiotic recombination	3.01E-02
182	GO:0030433: ubiquitin-dependent ERAD pathway	3.01E-02
183	GO:0071369: cellular response to ethylene stimulus	3.20E-02
184	GO:0001944: vasculature development	3.20E-02
185	GO:0009686: gibberellin biosynthetic process	3.20E-02
186	GO:0048443: stamen development	3.40E-02
187	GO:0019722: calcium-mediated signaling	3.40E-02
188	GO:0009651: response to salt stress	3.49E-02
189	GO:0006810: transport	3.56E-02
190	GO:0008284: positive regulation of cell proliferation	3.60E-02
191	GO:0042545: cell wall modification	3.73E-02
192	GO:0005975: carbohydrate metabolic process	3.78E-02
193	GO:0000271: polysaccharide biosynthetic process	3.81E-02
194	GO:0010268: brassinosteroid homeostasis	4.01E-02
195	GO:0009958: positive gravitropism	4.01E-02
196	GO:0006814: sodium ion transport	4.23E-02
197	GO:0008654: phospholipid biosynthetic process	4.44E-02
198	GO:0009749: response to glucose	4.44E-02
199	GO:0042742: defense response to bacterium	4.58E-02
200	GO:0006635: fatty acid beta-oxidation	4.66E-02
201	GO:0016132: brassinosteroid biosynthetic process	4.66E-02
202	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.66E-02
203	GO:0000302: response to reactive oxygen species	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0080123: jasmonate-amino synthetase activity	0.00E+00
2	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
3	GO:0015215: nucleotide transmembrane transporter activity	0.00E+00
4	GO:0070566: adenylyltransferase activity	0.00E+00
5	GO:0017048: Rho GTPase binding	0.00E+00
6	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
7	GO:0009922: fatty acid elongase activity	4.98E-11
8	GO:0070330: aromatase activity	9.33E-08
9	GO:0046423: allene-oxide cyclase activity	9.33E-08
10	GO:0018685: alkane 1-monooxygenase activity	2.87E-06
11	GO:0016629: 12-oxophytodienoate reductase activity	9.09E-06
12	GO:0043565: sequence-specific DNA binding	1.07E-05
13	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.16E-05
14	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.16E-05
15	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.16E-05
16	GO:0016621: cinnamoyl-CoA reductase activity	4.45E-04
17	GO:0015245: fatty acid transporter activity	4.53E-04
18	GO:0008809: carnitine racemase activity	4.53E-04
19	GO:0090422: thiamine pyrophosphate transporter activity	4.53E-04
20	GO:0004348: glucosylceramidase activity	4.53E-04
21	GO:0090440: abscisic acid transporter activity	4.53E-04
22	GO:0031957: very long-chain fatty acid-CoA ligase activity	4.53E-04
23	GO:0015297: antiporter activity	7.62E-04
24	GO:0004103: choline kinase activity	9.79E-04
25	GO:0008883: glutamyl-tRNA reductase activity	9.79E-04
26	GO:0001047: core promoter binding	9.79E-04
27	GO:0017040: ceramidase activity	9.79E-04
28	GO:0003839: gamma-glutamylcyclotransferase activity	9.79E-04
29	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	9.79E-04
30	GO:0015117: thiosulfate transmembrane transporter activity	9.79E-04
31	GO:1901677: phosphate transmembrane transporter activity	9.79E-04
32	GO:0004383: guanylate cyclase activity	1.59E-03
33	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.59E-03
34	GO:0005457: GDP-fucose transmembrane transporter activity	1.59E-03
35	GO:0005310: dicarboxylic acid transmembrane transporter activity	1.59E-03
36	GO:0047274: galactinol-sucrose galactosyltransferase activity	1.59E-03
37	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	1.59E-03
38	GO:0015141: succinate transmembrane transporter activity	1.59E-03
39	GO:0008083: growth factor activity	1.88E-03
40	GO:0044212: transcription regulatory region DNA binding	2.14E-03
41	GO:0004165: dodecenoyl-CoA delta-isomerase activity	2.31E-03
42	GO:0004351: glutamate decarboxylase activity	2.31E-03
43	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.31E-03
44	GO:0001653: peptide receptor activity	2.31E-03
45	GO:0015131: oxaloacetate transmembrane transporter activity	2.31E-03
46	GO:0035250: UDP-galactosyltransferase activity	2.31E-03
47	GO:0005432: calcium:sodium antiporter activity	2.31E-03
48	GO:0005460: UDP-glucose transmembrane transporter activity	2.31E-03
49	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	2.31E-03
50	GO:0008526: phosphatidylinositol transporter activity	3.10E-03
51	GO:0050378: UDP-glucuronate 4-epimerase activity	3.10E-03
52	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.35E-03
53	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.98E-03
54	GO:0005459: UDP-galactose transmembrane transporter activity	3.98E-03
55	GO:0080122: AMP transmembrane transporter activity	3.98E-03
56	GO:0008514: organic anion transmembrane transporter activity	4.12E-03
57	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	4.92E-03
58	GO:0019137: thioglucosidase activity	4.92E-03
59	GO:0010181: FMN binding	5.60E-03
60	GO:0015217: ADP transmembrane transporter activity	5.94E-03
61	GO:0102391: decanoate--CoA ligase activity	5.94E-03
62	GO:0005347: ATP transmembrane transporter activity	5.94E-03
63	GO:0004467: long-chain fatty acid-CoA ligase activity	7.03E-03
64	GO:0004427: inorganic diphosphatase activity	7.03E-03
65	GO:0015140: malate transmembrane transporter activity	7.03E-03
66	GO:0019899: enzyme binding	7.03E-03
67	GO:0003700: transcription factor activity, sequence-specific DNA binding	7.23E-03
68	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	7.58E-03
69	GO:0015491: cation:cation antiporter activity	8.18E-03
70	GO:0004674: protein serine/threonine kinase activity	8.49E-03
71	GO:0008308: voltage-gated anion channel activity	9.38E-03
72	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	1.07E-02
73	GO:0102483: scopolin beta-glucosidase activity	1.10E-02
74	GO:0005096: GTPase activator activity	1.28E-02
75	GO:0005545: 1-phosphatidylinositol binding	1.34E-02
76	GO:0004864: protein phosphatase inhibitor activity	1.34E-02
77	GO:0004713: protein tyrosine kinase activity	1.34E-02
78	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.41E-02
79	GO:0015116: sulfate transmembrane transporter activity	1.63E-02
80	GO:0008422: beta-glucosidase activity	1.70E-02
81	GO:0005315: inorganic phosphate transmembrane transporter activity	1.79E-02
82	GO:0005262: calcium channel activity	1.79E-02
83	GO:0015114: phosphate ion transmembrane transporter activity	1.79E-02
84	GO:0000175: 3'-5'-exoribonuclease activity	1.79E-02
85	GO:0009055: electron carrier activity	2.02E-02
86	GO:0005215: transporter activity	2.10E-02
87	GO:0016301: kinase activity	2.15E-02
88	GO:0051087: chaperone binding	2.64E-02
89	GO:0005516: calmodulin binding	2.81E-02
90	GO:0004540: ribonuclease activity	2.82E-02
91	GO:0004707: MAP kinase activity	2.82E-02
92	GO:0031625: ubiquitin protein ligase binding	2.99E-02
93	GO:0045330: aspartyl esterase activity	2.99E-02
94	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	3.01E-02
95	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.30E-02
96	GO:0030599: pectinesterase activity	3.62E-02
97	GO:0016746: transferase activity, transferring acyl groups	3.96E-02
98	GO:0030276: clathrin binding	4.01E-02
99	GO:0052689: carboxylic ester hydrolase activity	4.18E-02
100	GO:0050662: coenzyme binding	4.23E-02

Rank	GO Term	Adjusted P value
1	GO:0032039: integrator complex	0.00E+00
2	GO:0016021: integral component of membrane	1.89E-04
3	GO:0009923: fatty acid elongase complex	4.53E-04
4	GO:0070382: exocytic vesicle	4.53E-04
5	GO:0005743: mitochondrial inner membrane	1.22E-03
6	GO:0046658: anchored component of plasma membrane	1.35E-03
7	GO:0009897: external side of plasma membrane	1.59E-03
8	GO:0045177: apical part of cell	2.31E-03
9	GO:0009331: glycerol-3-phosphate dehydrogenase complex	2.31E-03
10	GO:0000178: exosome (RNase complex)	3.98E-03
11	GO:0005768: endosome	4.94E-03
12	GO:0030173: integral component of Golgi membrane	5.94E-03
13	GO:0032580: Golgi cisterna membrane	7.80E-03
14	GO:0031225: anchored component of membrane	1.05E-02
15	GO:0045298: tubulin complex	1.07E-02
16	GO:0016604: nuclear body	1.20E-02
17	GO:0005938: cell cortex	1.79E-02
18	GO:0005794: Golgi apparatus	2.65E-02
19	GO:0005905: clathrin-coated pit	2.82E-02
20	GO:0016020: membrane	3.01E-02
21	GO:0005802: trans-Golgi network	3.12E-02
22	GO:0000790: nuclear chromatin	3.60E-02
23	GO:0030136: clathrin-coated vesicle	3.60E-02
24	GO:0009706: chloroplast inner membrane	3.84E-02
25	GO:0005770: late endosome	4.01E-02
26	GO:0005886: plasma membrane	4.15E-02