GO Enrichment Analysis of Co-expressed Genes with
AT3G56070
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 2 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 3 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 4 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 5 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 6 | GO:0071433: cell wall repair | 0.00E+00 |
| 7 | GO:0051050: positive regulation of transport | 0.00E+00 |
| 8 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 9 | GO:0080180: 2-methylguanosine metabolic process | 0.00E+00 |
| 10 | GO:0006364: rRNA processing | 4.40E-10 |
| 11 | GO:0006412: translation | 6.30E-07 |
| 12 | GO:0042254: ribosome biogenesis | 1.47E-06 |
| 13 | GO:0010162: seed dormancy process | 1.97E-06 |
| 14 | GO:0031120: snRNA pseudouridine synthesis | 9.88E-05 |
| 15 | GO:0031118: rRNA pseudouridine synthesis | 9.88E-05 |
| 16 | GO:0043985: histone H4-R3 methylation | 9.88E-05 |
| 17 | GO:1990258: histone glutamine methylation | 9.88E-05 |
| 18 | GO:0006177: GMP biosynthetic process | 9.88E-05 |
| 19 | GO:0000494: box C/D snoRNA 3'-end processing | 9.88E-05 |
| 20 | GO:0009451: RNA modification | 1.27E-04 |
| 21 | GO:0009967: positive regulation of signal transduction | 2.32E-04 |
| 22 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.32E-04 |
| 23 | GO:0045041: protein import into mitochondrial intermembrane space | 2.32E-04 |
| 24 | GO:0034470: ncRNA processing | 2.32E-04 |
| 25 | GO:0009944: polarity specification of adaxial/abaxial axis | 3.16E-04 |
| 26 | GO:0045039: protein import into mitochondrial inner membrane | 3.86E-04 |
| 27 | GO:0007005: mitochondrion organization | 4.20E-04 |
| 28 | GO:0009294: DNA mediated transformation | 4.58E-04 |
| 29 | GO:0006986: response to unfolded protein | 5.54E-04 |
| 30 | GO:0051131: chaperone-mediated protein complex assembly | 5.54E-04 |
| 31 | GO:0051085: chaperone mediated protein folding requiring cofactor | 5.54E-04 |
| 32 | GO:0042273: ribosomal large subunit biogenesis | 7.37E-04 |
| 33 | GO:0006479: protein methylation | 7.37E-04 |
| 34 | GO:0000460: maturation of 5.8S rRNA | 7.37E-04 |
| 35 | GO:1900864: mitochondrial RNA modification | 7.37E-04 |
| 36 | GO:0046345: abscisic acid catabolic process | 7.37E-04 |
| 37 | GO:0031167: rRNA methylation | 9.32E-04 |
| 38 | GO:0016554: cytidine to uridine editing | 1.14E-03 |
| 39 | GO:0000741: karyogamy | 1.14E-03 |
| 40 | GO:0000470: maturation of LSU-rRNA | 1.14E-03 |
| 41 | GO:0042026: protein refolding | 1.36E-03 |
| 42 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.36E-03 |
| 43 | GO:0006458: 'de novo' protein folding | 1.36E-03 |
| 44 | GO:0006400: tRNA modification | 1.59E-03 |
| 45 | GO:0042255: ribosome assembly | 1.84E-03 |
| 46 | GO:0001510: RNA methylation | 2.10E-03 |
| 47 | GO:0001558: regulation of cell growth | 2.10E-03 |
| 48 | GO:0007338: single fertilization | 2.37E-03 |
| 49 | GO:1900865: chloroplast RNA modification | 2.65E-03 |
| 50 | GO:0030422: production of siRNA involved in RNA interference | 2.95E-03 |
| 51 | GO:0006626: protein targeting to mitochondrion | 3.89E-03 |
| 52 | GO:0048364: root development | 4.01E-03 |
| 53 | GO:0016569: covalent chromatin modification | 4.06E-03 |
| 54 | GO:0006541: glutamine metabolic process | 4.22E-03 |
| 55 | GO:0010030: positive regulation of seed germination | 4.57E-03 |
| 56 | GO:0000027: ribosomal large subunit assembly | 5.28E-03 |
| 57 | GO:0051302: regulation of cell division | 5.65E-03 |
| 58 | GO:0061077: chaperone-mediated protein folding | 6.03E-03 |
| 59 | GO:0071215: cellular response to abscisic acid stimulus | 6.82E-03 |
| 60 | GO:0008033: tRNA processing | 8.07E-03 |
| 61 | GO:0010501: RNA secondary structure unwinding | 8.07E-03 |
| 62 | GO:0010197: polar nucleus fusion | 8.50E-03 |
| 63 | GO:0046686: response to cadmium ion | 8.91E-03 |
| 64 | GO:0080156: mitochondrial mRNA modification | 9.85E-03 |
| 65 | GO:0006457: protein folding | 1.09E-02 |
| 66 | GO:0009567: double fertilization forming a zygote and endosperm | 1.13E-02 |
| 67 | GO:0016049: cell growth | 1.49E-02 |
| 68 | GO:0048527: lateral root development | 1.71E-02 |
| 69 | GO:0032259: methylation | 2.02E-02 |
| 70 | GO:0009408: response to heat | 2.11E-02 |
| 71 | GO:0000154: rRNA modification | 2.37E-02 |
| 72 | GO:0048367: shoot system development | 3.11E-02 |
| 73 | GO:0009553: embryo sac development | 3.39E-02 |
| 74 | GO:0009735: response to cytokinin | 3.43E-02 |
| 75 | GO:0006396: RNA processing | 3.54E-02 |
| 76 | GO:0000398: mRNA splicing, via spliceosome | 3.84E-02 |
| 77 | GO:0009845: seed germination | 4.30E-02 |
| 78 | GO:0009790: embryo development | 4.54E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0003922: GMP synthase (glutamine-hydrolyzing) activity | 0.00E+00 |
| 2 | GO:0050355: triphosphatase activity | 0.00E+00 |
| 3 | GO:0003723: RNA binding | 2.98E-17 |
| 4 | GO:0003735: structural constituent of ribosome | 2.52E-10 |
| 5 | GO:0000166: nucleotide binding | 2.38E-07 |
| 6 | GO:0030515: snoRNA binding | 3.27E-07 |
| 7 | GO:0004407: histone deacetylase activity | 9.35E-06 |
| 8 | GO:0008026: ATP-dependent helicase activity | 4.96E-05 |
| 9 | GO:0019843: rRNA binding | 6.79E-05 |
| 10 | GO:1990259: histone-glutamine methyltransferase activity | 9.88E-05 |
| 11 | GO:0042134: rRNA primary transcript binding | 9.88E-05 |
| 12 | GO:0050897: cobalt ion binding | 1.37E-04 |
| 13 | GO:0044183: protein binding involved in protein folding | 1.48E-04 |
| 14 | GO:0005078: MAP-kinase scaffold activity | 2.32E-04 |
| 15 | GO:0043021: ribonucleoprotein complex binding | 2.32E-04 |
| 16 | GO:0003938: IMP dehydrogenase activity | 2.32E-04 |
| 17 | GO:0008649: rRNA methyltransferase activity | 3.86E-04 |
| 18 | GO:0070181: small ribosomal subunit rRNA binding | 3.86E-04 |
| 19 | GO:0051082: unfolded protein binding | 5.21E-04 |
| 20 | GO:0004519: endonuclease activity | 7.50E-04 |
| 21 | GO:0016462: pyrophosphatase activity | 1.14E-03 |
| 22 | GO:0008235: metalloexopeptidase activity | 1.59E-03 |
| 23 | GO:0008168: methyltransferase activity | 1.69E-03 |
| 24 | GO:0003746: translation elongation factor activity | 1.77E-03 |
| 25 | GO:0008173: RNA methyltransferase activity | 2.10E-03 |
| 26 | GO:0000049: tRNA binding | 3.57E-03 |
| 27 | GO:0009982: pseudouridine synthase activity | 3.89E-03 |
| 28 | GO:0051087: chaperone binding | 5.65E-03 |
| 29 | GO:0005507: copper ion binding | 1.23E-02 |
| 30 | GO:0004004: ATP-dependent RNA helicase activity | 1.43E-02 |
| 31 | GO:0016787: hydrolase activity | 1.44E-02 |
| 32 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.54E-02 |
| 33 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 1.88E-02 |
| 34 | GO:0005524: ATP binding | 2.10E-02 |
| 35 | GO:0003924: GTPase activity | 2.11E-02 |
| 36 | GO:0016887: ATPase activity | 3.27E-02 |
| 37 | GO:0008565: protein transporter activity | 4.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 2 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 3 | GO:0034455: t-UTP complex | 0.00E+00 |
| 4 | GO:0005730: nucleolus | 1.92E-27 |
| 5 | GO:0032040: small-subunit processome | 2.98E-08 |
| 6 | GO:0005840: ribosome | 3.47E-07 |
| 7 | GO:0015030: Cajal body | 1.47E-06 |
| 8 | GO:0022626: cytosolic ribosome | 3.05E-06 |
| 9 | GO:0022627: cytosolic small ribosomal subunit | 1.66E-05 |
| 10 | GO:0031428: box C/D snoRNP complex | 2.21E-05 |
| 11 | GO:0005834: heterotrimeric G-protein complex | 3.50E-05 |
| 12 | GO:0030687: preribosome, large subunit precursor | 4.27E-05 |
| 13 | GO:0022625: cytosolic large ribosomal subunit | 4.42E-05 |
| 14 | GO:0005829: cytosol | 8.37E-05 |
| 15 | GO:0005759: mitochondrial matrix | 1.03E-04 |
| 16 | GO:0019013: viral nucleocapsid | 1.98E-04 |
| 17 | GO:0070545: PeBoW complex | 2.32E-04 |
| 18 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.98E-04 |
| 19 | GO:0031429: box H/ACA snoRNP complex | 5.54E-04 |
| 20 | GO:0005654: nucleoplasm | 6.67E-04 |
| 21 | GO:0005682: U5 snRNP | 7.37E-04 |
| 22 | GO:0005687: U4 snRNP | 9.32E-04 |
| 23 | GO:0030529: intracellular ribonucleoprotein complex | 1.09E-03 |
| 24 | GO:0016363: nuclear matrix | 1.36E-03 |
| 25 | GO:0005739: mitochondrion | 1.64E-03 |
| 26 | GO:0071004: U2-type prespliceosome | 1.84E-03 |
| 27 | GO:0034399: nuclear periphery | 1.84E-03 |
| 28 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 2.10E-03 |
| 29 | GO:0005685: U1 snRNP | 2.37E-03 |
| 30 | GO:0005774: vacuolar membrane | 2.64E-03 |
| 31 | GO:0005634: nucleus | 2.92E-03 |
| 32 | GO:0005686: U2 snRNP | 2.95E-03 |
| 33 | GO:0071013: catalytic step 2 spliceosome | 3.25E-03 |
| 34 | GO:0005618: cell wall | 3.45E-03 |
| 35 | GO:0005747: mitochondrial respiratory chain complex I | 3.70E-03 |
| 36 | GO:0005732: small nucleolar ribonucleoprotein complex | 4.70E-03 |
| 37 | GO:0009506: plasmodesma | 5.05E-03 |
| 38 | GO:0005758: mitochondrial intermembrane space | 5.28E-03 |
| 39 | GO:0015935: small ribosomal subunit | 6.03E-03 |
| 40 | GO:0016592: mediator complex | 1.03E-02 |
| 41 | GO:0015934: large ribosomal subunit | 1.71E-02 |
| 42 | GO:0005773: vacuole | 1.89E-02 |
| 43 | GO:0005743: mitochondrial inner membrane | 1.97E-02 |
| 44 | GO:0009543: chloroplast thylakoid lumen | 4.07E-02 |