GO Enrichment Analysis of Co-expressed Genes with
AT3G56020
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090239: regulation of histone H4 acetylation | 0.00E+00 |
| 2 | GO:0031990: mRNA export from nucleus in response to heat stress | 0.00E+00 |
| 3 | GO:0046487: glyoxylate metabolic process | 0.00E+00 |
| 4 | GO:1904874: positive regulation of telomerase RNA localization to Cajal body | 0.00E+00 |
| 5 | GO:0007530: sex determination | 0.00E+00 |
| 6 | GO:0070918: production of small RNA involved in gene silencing by RNA | 0.00E+00 |
| 7 | GO:0006412: translation | 2.91E-172 |
| 8 | GO:0042254: ribosome biogenesis | 1.79E-75 |
| 9 | GO:0000027: ribosomal large subunit assembly | 2.21E-12 |
| 10 | GO:0000028: ribosomal small subunit assembly | 3.68E-07 |
| 11 | GO:0009735: response to cytokinin | 2.07E-06 |
| 12 | GO:0006626: protein targeting to mitochondrion | 5.73E-06 |
| 13 | GO:0009955: adaxial/abaxial pattern specification | 9.96E-06 |
| 14 | GO:0002181: cytoplasmic translation | 3.26E-05 |
| 15 | GO:1902626: assembly of large subunit precursor of preribosome | 3.26E-05 |
| 16 | GO:0000387: spliceosomal snRNP assembly | 5.93E-05 |
| 17 | GO:0000398: mRNA splicing, via spliceosome | 6.58E-05 |
| 18 | GO:0006820: anion transport | 1.18E-04 |
| 19 | GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c | 4.62E-04 |
| 20 | GO:0031118: rRNA pseudouridine synthesis | 4.64E-04 |
| 21 | GO:0015801: aromatic amino acid transport | 4.64E-04 |
| 22 | GO:0030490: maturation of SSU-rRNA | 4.64E-04 |
| 23 | GO:2001006: regulation of cellulose biosynthetic process | 4.64E-04 |
| 24 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.64E-04 |
| 25 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 4.64E-04 |
| 26 | GO:0034402: recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex | 4.64E-04 |
| 27 | GO:0032365: intracellular lipid transport | 4.64E-04 |
| 28 | GO:0006407: rRNA export from nucleus | 4.64E-04 |
| 29 | GO:0031120: snRNA pseudouridine synthesis | 4.64E-04 |
| 30 | GO:0098656: anion transmembrane transport | 8.40E-04 |
| 31 | GO:0009245: lipid A biosynthetic process | 8.40E-04 |
| 32 | GO:0071668: plant-type cell wall assembly | 1.00E-03 |
| 33 | GO:0048569: post-embryonic animal organ development | 1.00E-03 |
| 34 | GO:0043981: histone H4-K5 acetylation | 1.00E-03 |
| 35 | GO:0045948: positive regulation of translational initiation | 1.00E-03 |
| 36 | GO:0042256: mature ribosome assembly | 1.63E-03 |
| 37 | GO:0000288: nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | 1.63E-03 |
| 38 | GO:0009150: purine ribonucleotide metabolic process | 1.63E-03 |
| 39 | GO:0007004: telomere maintenance via telomerase | 2.37E-03 |
| 40 | GO:0070301: cellular response to hydrogen peroxide | 2.37E-03 |
| 41 | GO:0006241: CTP biosynthetic process | 2.37E-03 |
| 42 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 2.37E-03 |
| 43 | GO:0006165: nucleoside diphosphate phosphorylation | 2.37E-03 |
| 44 | GO:0006228: UTP biosynthetic process | 2.37E-03 |
| 45 | GO:0030150: protein import into mitochondrial matrix | 2.70E-03 |
| 46 | GO:0042274: ribosomal small subunit biogenesis | 3.18E-03 |
| 47 | GO:0006183: GTP biosynthetic process | 3.18E-03 |
| 48 | GO:0006414: translational elongation | 3.46E-03 |
| 49 | GO:0009965: leaf morphogenesis | 4.29E-03 |
| 50 | GO:0000470: maturation of LSU-rRNA | 5.05E-03 |
| 51 | GO:0043248: proteasome assembly | 5.05E-03 |
| 52 | GO:0045040: protein import into mitochondrial outer membrane | 5.05E-03 |
| 53 | GO:0000911: cytokinesis by cell plate formation | 6.09E-03 |
| 54 | GO:0009793: embryo development ending in seed dormancy | 6.84E-03 |
| 55 | GO:0032880: regulation of protein localization | 7.20E-03 |
| 56 | GO:0001522: pseudouridine synthesis | 8.39E-03 |
| 57 | GO:0044030: regulation of DNA methylation | 9.63E-03 |
| 58 | GO:0009808: lignin metabolic process | 9.63E-03 |
| 59 | GO:0022900: electron transport chain | 9.63E-03 |
| 60 | GO:0006367: transcription initiation from RNA polymerase II promoter | 9.63E-03 |
| 61 | GO:0048589: developmental growth | 1.09E-02 |
| 62 | GO:0009060: aerobic respiration | 1.09E-02 |
| 63 | GO:0015031: protein transport | 1.12E-02 |
| 64 | GO:0010015: root morphogenesis | 1.52E-02 |
| 65 | GO:0006913: nucleocytoplasmic transport | 1.52E-02 |
| 66 | GO:0016925: protein sumoylation | 1.68E-02 |
| 67 | GO:0006790: sulfur compound metabolic process | 1.68E-02 |
| 68 | GO:2000028: regulation of photoperiodism, flowering | 1.84E-02 |
| 69 | GO:0010102: lateral root morphogenesis | 1.84E-02 |
| 70 | GO:0010628: positive regulation of gene expression | 1.84E-02 |
| 71 | GO:0048467: gynoecium development | 2.00E-02 |
| 72 | GO:0006446: regulation of translational initiation | 2.00E-02 |
| 73 | GO:0008283: cell proliferation | 2.08E-02 |
| 74 | GO:0009644: response to high light intensity | 2.25E-02 |
| 75 | GO:0006289: nucleotide-excision repair | 2.53E-02 |
| 76 | GO:0006406: mRNA export from nucleus | 2.53E-02 |
| 77 | GO:0006306: DNA methylation | 2.90E-02 |
| 78 | GO:0006366: transcription from RNA polymerase II promoter | 2.90E-02 |
| 79 | GO:0003333: amino acid transmembrane transport | 2.90E-02 |
| 80 | GO:0007005: mitochondrion organization | 3.09E-02 |
| 81 | GO:0040007: growth | 3.29E-02 |
| 82 | GO:0009651: response to salt stress | 3.78E-02 |
| 83 | GO:0000413: protein peptidyl-prolyl isomerization | 3.91E-02 |
| 84 | GO:0010197: polar nucleus fusion | 4.12E-02 |
| 85 | GO:0010183: pollen tube guidance | 4.56E-02 |
| 86 | GO:0006635: fatty acid beta-oxidation | 4.78E-02 |
| 87 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 4.78E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0034513: box H/ACA snoRNA binding | 0.00E+00 |
| 2 | GO:0003735: structural constituent of ribosome | 6.42E-215 |
| 3 | GO:0003729: mRNA binding | 2.06E-32 |
| 4 | GO:0019843: rRNA binding | 1.09E-17 |
| 5 | GO:0015288: porin activity | 2.33E-05 |
| 6 | GO:0008308: voltage-gated anion channel activity | 3.30E-05 |
| 7 | GO:0008097: 5S rRNA binding | 7.03E-05 |
| 8 | GO:0031177: phosphopantetheine binding | 2.68E-04 |
| 9 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.91E-04 |
| 10 | GO:0003723: RNA binding | 3.54E-04 |
| 11 | GO:0000035: acyl binding | 3.59E-04 |
| 12 | GO:0008121: ubiquinol-cytochrome-c reductase activity | 4.62E-04 |
| 13 | GO:0035614: snRNA stem-loop binding | 4.64E-04 |
| 14 | GO:0005080: protein kinase C binding | 4.64E-04 |
| 15 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 5.75E-04 |
| 16 | GO:0030619: U1 snRNA binding | 1.00E-03 |
| 17 | GO:0015173: aromatic amino acid transmembrane transporter activity | 1.00E-03 |
| 18 | GO:0070034: telomerase RNA binding | 1.00E-03 |
| 19 | GO:0032934: sterol binding | 1.00E-03 |
| 20 | GO:0070180: large ribosomal subunit rRNA binding | 1.63E-03 |
| 21 | GO:0070181: small ribosomal subunit rRNA binding | 1.63E-03 |
| 22 | GO:0015266: protein channel activity | 1.73E-03 |
| 23 | GO:0004550: nucleoside diphosphate kinase activity | 2.37E-03 |
| 24 | GO:0047627: adenylylsulfatase activity | 2.37E-03 |
| 25 | GO:0031386: protein tag | 4.08E-03 |
| 26 | GO:0005275: amine transmembrane transporter activity | 4.08E-03 |
| 27 | GO:0031369: translation initiation factor binding | 5.05E-03 |
| 28 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 5.41E-03 |
| 29 | GO:0051920: peroxiredoxin activity | 6.09E-03 |
| 30 | GO:0030515: snoRNA binding | 7.20E-03 |
| 31 | GO:0016209: antioxidant activity | 8.39E-03 |
| 32 | GO:0043022: ribosome binding | 8.39E-03 |
| 33 | GO:0001055: RNA polymerase II activity | 1.23E-02 |
| 34 | GO:0001054: RNA polymerase I activity | 1.52E-02 |
| 35 | GO:0044183: protein binding involved in protein folding | 1.52E-02 |
| 36 | GO:0004129: cytochrome-c oxidase activity | 1.52E-02 |
| 37 | GO:0008794: arsenate reductase (glutaredoxin) activity | 1.52E-02 |
| 38 | GO:0003746: translation elongation factor activity | 1.61E-02 |
| 39 | GO:0001056: RNA polymerase III activity | 1.68E-02 |
| 40 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.43E-02 |
| 41 | GO:0051536: iron-sulfur cluster binding | 2.53E-02 |
| 42 | GO:0003727: single-stranded RNA binding | 3.49E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043186: P granule | 0.00E+00 |
| 2 | GO:0005675: holo TFIIH complex | 0.00E+00 |
| 3 | GO:0090661: box H/ACA telomerase RNP complex | 0.00E+00 |
| 4 | GO:0072589: box H/ACA scaRNP complex | 0.00E+00 |
| 5 | GO:0005840: ribosome | 2.26E-150 |
| 6 | GO:0022625: cytosolic large ribosomal subunit | 1.28E-126 |
| 7 | GO:0022626: cytosolic ribosome | 4.95E-121 |
| 8 | GO:0022627: cytosolic small ribosomal subunit | 1.63E-86 |
| 9 | GO:0005730: nucleolus | 1.95E-40 |
| 10 | GO:0005737: cytoplasm | 4.11E-40 |
| 11 | GO:0005829: cytosol | 7.89E-35 |
| 12 | GO:0009506: plasmodesma | 7.95E-24 |
| 13 | GO:0015934: large ribosomal subunit | 1.63E-20 |
| 14 | GO:0005774: vacuolar membrane | 8.38E-15 |
| 15 | GO:0015935: small ribosomal subunit | 7.35E-14 |
| 16 | GO:0016020: membrane | 5.87E-12 |
| 17 | GO:0005618: cell wall | 2.12E-08 |
| 18 | GO:0005773: vacuole | 4.75E-08 |
| 19 | GO:0005732: small nucleolar ribonucleoprotein complex | 4.14E-07 |
| 20 | GO:0019013: viral nucleocapsid | 5.73E-06 |
| 21 | GO:0009507: chloroplast | 1.45E-05 |
| 22 | GO:0005853: eukaryotic translation elongation factor 1 complex | 3.26E-05 |
| 23 | GO:0046930: pore complex | 3.30E-05 |
| 24 | GO:0005742: mitochondrial outer membrane translocase complex | 3.30E-05 |
| 25 | GO:0005665: DNA-directed RNA polymerase II, core complex | 1.18E-04 |
| 26 | GO:0005681: spliceosomal complex | 2.29E-04 |
| 27 | GO:0000419: DNA-directed RNA polymerase V complex | 2.36E-04 |
| 28 | GO:0005741: mitochondrial outer membrane | 3.55E-04 |
| 29 | GO:0030686: 90S preribosome | 4.64E-04 |
| 30 | GO:0005886: plasma membrane | 5.87E-04 |
| 31 | GO:0005685: U1 snRNP | 8.40E-04 |
| 32 | GO:0071011: precatalytic spliceosome | 9.90E-04 |
| 33 | GO:0015030: Cajal body | 9.90E-04 |
| 34 | GO:0035145: exon-exon junction complex | 1.00E-03 |
| 35 | GO:0071013: catalytic step 2 spliceosome | 1.33E-03 |
| 36 | GO:0000439: core TFIIH complex | 1.63E-03 |
| 37 | GO:0034719: SMN-Sm protein complex | 1.63E-03 |
| 38 | GO:0005750: mitochondrial respiratory chain complex III | 1.95E-03 |
| 39 | GO:0031429: box H/ACA snoRNP complex | 2.37E-03 |
| 40 | GO:1990726: Lsm1-7-Pat1 complex | 2.37E-03 |
| 41 | GO:0005758: mitochondrial intermembrane space | 2.70E-03 |
| 42 | GO:0070469: respiratory chain | 2.99E-03 |
| 43 | GO:0005682: U5 snRNP | 3.18E-03 |
| 44 | GO:0005687: U4 snRNP | 4.08E-03 |
| 45 | GO:0097526: spliceosomal tri-snRNP complex | 4.08E-03 |
| 46 | GO:0005746: mitochondrial respiratory chain | 4.08E-03 |
| 47 | GO:0016272: prefoldin complex | 6.09E-03 |
| 48 | GO:0005762: mitochondrial large ribosomal subunit | 6.09E-03 |
| 49 | GO:0005689: U12-type spliceosomal complex | 6.09E-03 |
| 50 | GO:0071004: U2-type prespliceosome | 8.39E-03 |
| 51 | GO:0045273: respiratory chain complex II | 8.39E-03 |
| 52 | GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) | 8.39E-03 |
| 53 | GO:0005688: U6 snRNP | 8.39E-03 |
| 54 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 9.63E-03 |
| 55 | GO:0000932: P-body | 9.68E-03 |
| 56 | GO:0005736: DNA-directed RNA polymerase I complex | 1.09E-02 |
| 57 | GO:0005654: nucleoplasm | 1.10E-02 |
| 58 | GO:0005666: DNA-directed RNA polymerase III complex | 1.23E-02 |
| 59 | GO:0000418: DNA-directed RNA polymerase IV complex | 1.37E-02 |
| 60 | GO:0005740: mitochondrial envelope | 1.37E-02 |
| 61 | GO:0005686: U2 snRNP | 1.37E-02 |
| 62 | GO:0005852: eukaryotic translation initiation factor 3 complex | 1.52E-02 |
| 63 | GO:0008541: proteasome regulatory particle, lid subcomplex | 1.52E-02 |
| 64 | GO:0031307: integral component of mitochondrial outer membrane | 1.68E-02 |
| 65 | GO:0045271: respiratory chain complex I | 2.71E-02 |
| 66 | GO:0000502: proteasome complex | 2.80E-02 |
| 67 | GO:0005747: mitochondrial respiratory chain complex I | 3.42E-02 |
| 68 | GO:0005622: intracellular | 3.93E-02 |